Rmu_sc0000654.1_g000028

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000654.1
OG0009691
Physical Location & Seq
Forward (+)
125796 .. 129840
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
atggtggaggttcttgatcttgaatcagaccttgatggggaggaggtggttgtgcctgagcttaatcagaacgatgctaaaagctatgaacatgtccaaaagatgattcaagacgaacagattggtaaactgaaagtggagcaatgtaagctctacttgaggaaaaatgggttgagactgactggcaataaggacacgctcattcagcggattaaggagcatctagagattttgaatggtggaggtgagaagaagtaccctgcatctagctttgttttgaattgcaaagttcggactgctactgacgtgaaaatagaaaaccactgcacagaccagacgctcaacaggctgaagaagataaaaagggaaggcgttgaaacttgtacctgctcaagggttagaaacatgatcacattccaagatcctagccgtccaaaatttagagagaagtcaccttccaccttgctgtgctccggtgaccagtggccggcgcggtctccggcaaccggactccggcgaacggtgaccggattccggcaaccaatgaccggattccgggaaccggtaaccgaaatccagcgaccgatgactggaatccggaatccggctattattgccccccaatcgaaaatttccggtcgtccactgattcaactcttggtttgctcctccaaaccagcacacctgagaatcggcggggcagaaggcacagcagagttcgatgagggcgacagggtaggctctacaggtggaatcgaattgatccatgacggagtcgagatctggggaggaagggcagtggcatattccgatgatggcgagggttttgcggttggattggaagtcctcccaggggctgggaggggcgctgccgaggacgaactagaagttgaggctgccggagtcccagggctggtgagcgaagggtggcttctggtgctcggtgtagatggagctgacggcggagagtggatcgaccggggggacgtggccgatggggaggacctccatgcggatcatggagctggtttcgatgctcacgtccgactccatttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP zf-CCCH

Protein Analysis

352

Amino Acids

38.38

Weight (kDa)

5.34

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP PF02037 41 - 76 1e-09 SAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 857
AccII CGCG 1 cut(s) 493
AccIII TCCGGA 1 cut(s) 597
AciI CCGC 6 cut(s) 208, 493, 696, 830, 963, 1013
AclWI GGATC 4 cut(s) 416, 757, 980, 1023
AcoI YGGCCR 2 cut(s) 485, 990
AcsI RAATTY 2 cut(s) 437, 630
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 2 cut(s) 257, 385
AflIII ACRYGT 1 cut(s) 91
AgeI ACCGGT 1 cut(s) 562
AgsI TTSAA 6 cut(s) 23, 110, 235, 280, 377, 653
AjiI CACGTC 3 cut(s) 307, 988, 1042
AjnI CCWGG 2 cut(s) 850, 907
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 6 cut(s) 61, 84, 151, 270, 956, 1025
AluI AGCT 6 cut(s) 61, 84, 151, 270, 956, 1025
Alw21I GWGCWC 2 cut(s) 473, 942
Alw26I GTCTC 2 cut(s) 169, 501
AlwI GGATC 4 cut(s) 416, 757, 980, 1023
AlwNI CAGNNNCTG 1 cut(s) 857
Aor13HI TCCGGA 1 cut(s) 597
AoxI GGCC 2 cut(s) 485, 990
ApeKI GCWGC 2 cut(s) 869, 896
ApoI RAATTY 2 cut(s) 437, 630
AsiGI ACCGGT 1 cut(s) 562
AspLEI GCGC 2 cut(s) 493, 869
AspS9I GGNCC 1 cut(s) 1003
AsuC2I CCSGG 2 cut(s) 557, 980
AsuHPI GGTGA 5 cut(s) 257, 444, 488, 535, 928
AvaII GGWCC 1 cut(s) 1003
Bbv12I GWGCWC 2 cut(s) 473, 942
BbvI GCAGC 2 cut(s) 856, 883
BccI CCATC 4 cut(s) 29, 809, 944, 989
BceAI ACGGC 2 cut(s) 414, 976
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 2 cut(s) 852, 909
BclI TGATCA 1 cut(s) 408
BcnI CCSGG 2 cut(s) 557, 980
BcoDI GTCTC 2 cut(s) 169, 501
BfaI CTAG 4 cut(s) 224, 267, 426, 884
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 1 cut(s) 870
BfuAI ACCTGC 1 cut(s) 395
BglII AGATCT 1 cut(s) 780
BisI GCNGC 2 cut(s) 870, 897
BlsI GCNGC 2 cut(s) 871, 898
Bme1390I CCNGG 4 cut(s) 557, 852, 909, 980
Bme18I GGWCC 1 cut(s) 1003
BmgBI CACGTC 3 cut(s) 307, 988, 1042
BmgT120I GGNCC 1 cut(s) 1003
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 4 cut(s) 557, 852, 909, 980
BmsI GCATC 4 cut(s) 64, 229, 272, 1024
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 178, 376
BpuMI CCSGG 2 cut(s) 557, 980
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 6 cut(s) 850, 851, 873, 907, 908, 979
BsaWI WCCGGW 7 cut(s) 473, 506, 527, 548, 562, 597, 635
Bse118I RCCGGY 2 cut(s) 487, 562
Bse1I ACTGG 3 cut(s) 187, 481, 595
Bse3DI GCAATG 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 597
BseBI CCWGG 2 cut(s) 852, 909
BseDI CCNNGG 6 cut(s) 850, 851, 873, 907, 908, 979
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 48, 677
BseNI ACTGG 3 cut(s) 187, 481, 595
BseRI GAGGAG 2 cut(s) 56, 658
BseXI GCAGC 2 cut(s) 856, 883
BseYI CCCAGC 1 cut(s) 857
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 493
Bsh1285I CGRYCG 3 cut(s) 584, 640, 979
BshFI GGCC 2 cut(s) 487, 992
BshTI ACCGGT 1 cut(s) 562
BsiEI CGRYCG 3 cut(s) 584, 640, 979
BsiHKAI GWGCWC 2 cut(s) 473, 942
BslFI GGGAC 2 cut(s) 890, 998
BsmAI GTCTC 2 cut(s) 169, 501
BsmFI GGGAC 2 cut(s) 890, 998
BsnI GGCC 2 cut(s) 487, 992
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 473, 942
Bsp13I TCCGGA 1 cut(s) 597
Bsp143I GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
BspACI CCGC 6 cut(s) 208, 493, 696, 830, 963, 1013
BspANI GGCC 2 cut(s) 487, 992
BspCNI CTCAG 2 cut(s) 49, 678
BspEI TCCGGA 1 cut(s) 597
BspFNI CGCG 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 4 cut(s) 416, 757, 980, 1023
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 487, 562
BsrI ACTGG 3 cut(s) 187, 481, 595
BssAI RCCGGY 2 cut(s) 487, 562
BssECI CCNNGG 6 cut(s) 850, 851, 873, 907, 908, 979
BssMI GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
Bst2UI CCWGG 2 cut(s) 852, 909
Bst4CI ACNGT 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 57, 686
BstEII GGTNACC 3 cut(s) 476, 523, 565
BstENI CCTNNNNNAGG 1 cut(s) 391
BstFNI CGCG 1 cut(s) 493
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 2 cut(s) 493, 869
BstKTI GATC 7 cut(s) 19, 411, 424, 765, 783, 975, 1018
BstMAI GTCTC 2 cut(s) 169, 501
BstMBI GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
BstMCI CGRYCG 3 cut(s) 584, 640, 979
BstMWI GCNNNNNNNGC 5 cut(s) 148, 205, 346, 614, 937
BstNI CCWGG 2 cut(s) 852, 909
BstNSI RCATGY 1 cut(s) 95
BstPI GGTNACC 3 cut(s) 476, 523, 565
BstSCI CCNGG 4 cut(s) 555, 850, 907, 978
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 856, 883
BstX2I RGATCY 2 cut(s) 421, 780
BstYI RGATCY 2 cut(s) 421, 780
BsuRI GGCC 2 cut(s) 487, 992
BtrI CACGTC 3 cut(s) 307, 988, 1042
BtsI GCAGTG 2 cut(s) 322, 804
BtsIMutI CAGTG 4 cut(s) 322, 488, 644, 804
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 489
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 2 cut(s) 493, 869
Cfr10I RCCGGY 2 cut(s) 487, 562
Cfr13I GGNCC 1 cut(s) 1003
CseI GACGC 1 cut(s) 346
Csp6I GTAC 2 cut(s) 256, 384
CspAI ACCGGT 1 cut(s) 562
CviAII CATG 5 cut(s) 92, 406, 767, 1010, 1019
CviQI GTAC 2 cut(s) 256, 384
DdeI CTNAG 2 cut(s) 57, 686
DpnI GATC 7 cut(s) 18, 410, 423, 764, 782, 974, 1017
DpnII GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
EaeI YGGCCR 2 cut(s) 485, 990
EciI GGCGGA 1 cut(s) 978
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 1003
Eco57I CTGAAG 1 cut(s) 371
Eco91I GGTNACC 3 cut(s) 476, 523, 565
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 1003
EcoO65I GGTNACC 3 cut(s) 476, 523, 565
EcoRII CCWGG 2 cut(s) 850, 907
FaeI CATG 5 cut(s) 95, 409, 770, 1013, 1022
FaiI YATR 7 cut(s) 87, 93, 407, 768, 805, 1011, 1020
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 915, 947
FaqI GGGAC 2 cut(s) 890, 998
FatI CATG 5 cut(s) 91, 405, 766, 1009, 1018
FauI CCCGC 1 cut(s) 689
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 870, 897
Fsp4HI GCNGC 2 cut(s) 870, 897
FspBI CTAG 4 cut(s) 224, 267, 426, 884
GlaI GCGC 2 cut(s) 492, 868
GluI GCNGC 2 cut(s) 870, 897
GsaI CCCAGC 1 cut(s) 861
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 2 cut(s) 487, 992
HgaI GACGC 1 cut(s) 346
HhaI GCGC 2 cut(s) 493, 869
Hin1II CATG 5 cut(s) 95, 409, 770, 1013, 1022
Hin6I GCGC 2 cut(s) 491, 867
HinP1I GCGC 2 cut(s) 491, 867
HphI GGTGA 5 cut(s) 257, 444, 488, 535, 928
Hpy166II GTNNAC 2 cut(s) 128, 644
Hpy188I TCNGA 6 cut(s) 28, 69, 294, 811, 1046, 1058
Hpy188III TCNNGA 6 cut(s) 14, 20, 110, 224, 598, 778
Hpy8I GTNNAC 2 cut(s) 128, 644
HpyAV CCTTC 5 cut(s) 362, 465, 698, 786, 917
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 3 cut(s) 306, 987, 1041
HpyCH4V TGCA 3 cut(s) 263, 285, 327
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 205, 346, 614, 937
HpyF3I CTNAG 2 cut(s) 57, 686
HpySE526I ACGT 3 cut(s) 306, 987, 1041
Hsp92II CATG 5 cut(s) 95, 409, 770, 1013, 1022
HspAI GCGC 2 cut(s) 491, 867
Kpn2I TCCGGA 1 cut(s) 597
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
LmnI GCTCC 6 cut(s) 139, 217, 476, 671, 953, 1022
Lsp1109I GCAGC 2 cut(s) 856, 883
LweI GCATC 4 cut(s) 64, 229, 272, 1024
MaeI CTAG 4 cut(s) 224, 267, 426, 884
MaeII ACGT 3 cut(s) 306, 987, 1041
MaeIII GTNAC 4 cut(s) 450, 476, 523, 565
MalI GATC 7 cut(s) 18, 410, 423, 764, 782, 974, 1017
MboI GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
MboII GAAGA 3 cut(s) 262, 364, 367
MflI RGATCY 2 cut(s) 421, 780
MhlI GDGCHC 2 cut(s) 473, 942
MluCI AATT 4 cut(s) 280, 437, 630, 758
MlyI GAGTC 4 cut(s) 504, 783, 912, 1041
MmeI TCCRAC 1 cut(s) 814
MroI TCCGGA 1 cut(s) 597
MroNI GCCGGC 1 cut(s) 487
MseI TTAA 2 cut(s) 63, 213
MspA1I CMGCKG 1 cut(s) 208
MspR9I CCNGG 4 cut(s) 557, 852, 909, 980
MvaI CCWGG 2 cut(s) 852, 909
MvnI CGCG 1 cut(s) 493
MwoI GCNNNNNNNGC 5 cut(s) 148, 205, 346, 614, 937
NaeI GCCGGC 1 cut(s) 489
NciI CCSGG 2 cut(s) 557, 980
NdeII GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
NgoMIV GCCGGC 1 cut(s) 487
NlaIII CATG 5 cut(s) 95, 409, 770, 1013, 1022
NlaIV GGNNCC 1 cut(s) 561
NmeAIII GCCGAG 1 cut(s) 898
NmuCI GTSAC 3 cut(s) 450, 476, 523
NspI RCATGY 1 cut(s) 95
PasI CCCWGGG 2 cut(s) 851, 908
PciI ACATGT 1 cut(s) 91
PcsI WCGNNNNNNNCGW 2 cut(s) 726, 1038
PdiI GCCGGC 1 cut(s) 489
PfeI GAWTC 9 cut(s) 23, 106, 531, 552, 594, 601, 649, 690, 753
PflFI GACNNNGTC 1 cut(s) 773
PflMI CCANNNNNTGG 1 cut(s) 857
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 1 cut(s) 562
PkrI GCNGC 2 cut(s) 871, 898
PleI GAGTC 4 cut(s) 504, 782, 911, 1041
PpsI GAGTC 4 cut(s) 504, 782, 911, 1041
PpuMI RGGWCCY 1 cut(s) 1003
PscI ACATGT 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 1003
Psp6I CCWGG 2 cut(s) 850, 907
PspEI GGTNACC 3 cut(s) 476, 523, 565
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 2 cut(s) 850, 907
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 1003
PspPPI RGGWCCY 1 cut(s) 1003
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 2 cut(s) 421, 780
PsyI GACNNNGTC 1 cut(s) 773
RsaI GTAC 2 cut(s) 257, 385
RsaNI GTAC 2 cut(s) 256, 384
SaqAI TTAA 2 cut(s) 63, 213
SatI GCNGC 2 cut(s) 870, 897
Sau3AI GATC 7 cut(s) 16, 408, 421, 762, 780, 972, 1015
Sau96I GGNCC 1 cut(s) 1003
SchI GAGTC 4 cut(s) 504, 783, 912, 1041
ScrFI CCNGG 4 cut(s) 557, 852, 909, 980
SduI GDGCHC 2 cut(s) 473, 942
SfaNI GCATC 4 cut(s) 64, 229, 272, 1024
SfcI CTRYAG 1 cut(s) 744
SinI GGWCC 1 cut(s) 1003
SmlI CTYRAG 2 cut(s) 157, 391
SmoI CTYRAG 2 cut(s) 157, 391
Sse9I AATT 4 cut(s) 280, 437, 630, 758
SsiI CCGC 6 cut(s) 208, 493, 696, 830, 963, 1013
SspMI CTAG 4 cut(s) 224, 267, 426, 884
StyD4I CCNGG 4 cut(s) 555, 850, 907, 978
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 3 cut(s) 309, 990, 1044
TaqI TCGA 6 cut(s) 626, 720, 756, 777, 975, 1032
TaqII GACCGA 1 cut(s) 598
TasI AATT 4 cut(s) 280, 437, 630, 758
TfiI GAWTC 9 cut(s) 23, 106, 531, 552, 594, 601, 649, 690, 753
Tru1I TTAA 2 cut(s) 63, 213
Tru9I TTAA 2 cut(s) 63, 213
TscAI CASTG 4 cut(s) 329, 488, 651, 804
TseFI GTSAC 3 cut(s) 450, 476, 523
TseI GCWGC 2 cut(s) 869, 896
Tsp45I GTSAC 3 cut(s) 450, 476, 523
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 4 cut(s) 329, 488, 651, 804
Tth111I GACNNNGTC 1 cut(s) 773
Van91I CCANNNNNTGG 1 cut(s) 857
VpaK11BI GGWCC 1 cut(s) 1003
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 2 cut(s) 437, 630
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XspI CTAG 4 cut(s) 224, 267, 426, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.