Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0006319

Physical Location & Seq

Genomic Coordinates Forward (+)

289975 .. 291320

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgccatgggccgggttcacgacccaccatggcggggctcatatgggatgccacccctggcacacagggcccggggcaagaccagcacagcccatctatttacacaacaagagggctgatatggcatcagaagaacaacctgtctcccacatcgaagataggggagactcctttcccatgctcgagtataaagacattagcacaaccaccttttacaggagttggatcggtaccccagaaggtatagcattctgtgtgaggtacccggagaaagccaccagaaacattggcgcgccagatagggaacgttgtcgttttggagttagtgaccaactattttacattttccttggtgaattttcaagcggcaagttttcatggtcgaaaaatttcgcgtacaacgacattctcgcctcctccggcgactacctccgcctctgggaggtcaaagactcctccgttgaccgcctcgagcccatctccgtcctcaacaactccaagaccagcgagttctgtgcgccgctgacgtcattcgactggaacgagatcgagcctcggcgaatcggaacctccagcatcgacaccacctgtacgatttgggacatcgagaagggagtcttcgagacgcagctgatcgctcacgataaggaggtttacgacattgcgtgggtcgaagctagggtttttgcctccgtctccgccgacgggtcggtgaggatttttgatctccgattcaaatcttctccgactcgtacccatcgactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008544 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0010026 GO:0010033 GO:0030154 GO:0030855 GO:0032502 GO:0032879 GO:0032880 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0060429 GO:0065007 GO:0090558 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

255

Amino Acids

29.02

Weight (kDa)

5.85

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	125 - 249	5.3e-07	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	176 - 244	8.1e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	177 - 248	3.4e-10	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	186 - 244	2e-07	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	186 - 246	6.2e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	187 - 246	4.2e-09	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24520 AT5G24520 AT5G24520 AT5G24520
fragaria_vesca	FvH4_7g32970 FvH4_7g32970
malus_domestica	MD01G1228700.v1.1 MD07G1299800.v1.1
prunus_persica	Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1
pyrus_communis	pycom01g23670 pycom07g27200
rosa_chinensis	RchiOBHm_Chr1g0382931
rosa_laevigata	RLG00000008438 RLG00000026148
rosa_multiflora	Rmu_co8253715.1_g000001 Rmu_sc0000698.1_g000059 Rmu_sc0018693.1_g000001 Rmu_sc0018693.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277770
rosa_rugosa	Rorug01G0437200
rosa_samantha	Rh1AG462700 Rh1BG419600 Rh1DG451600 Rh5AG038100
rosa_wichuraiana	Rw1G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	530
Acc65I	GGTACC	2 cut(s)	230, 261
AccB1I	GGYRCC	2 cut(s)	230, 261
AccII	CGCG	2 cut(s)	293, 395
AciI	CCGC	6 cut(s)	33, 366, 433, 466, 521, 699
AclI	AACGTT	1 cut(s)	307
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	356, 388
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	5 cut(s)	232, 263, 398, 592, 754
AfiI	CCNNNNNNNGG	6 cut(s)	11, 34, 216, 439, 442, 705
AgsI	TTSAA	2 cut(s)	363, 736
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	631, 677
AluI	AGCT	2 cut(s)	631, 677
Alw26I	GTCTC	4 cut(s)	148, 159, 617, 700
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	3 cut(s)	71, 182, 470
AoxI	GGCC	2 cut(s)	9, 68
ApaI	GGGCCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	628
ApoI	RAATTY	2 cut(s)	356, 388
AscI	GGCGCGCC	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	389
Asp718I	GGTACC	2 cut(s)	230, 261
AspLEI	GCGC	3 cut(s)	293, 295, 520
AspS9I	GGNCC	3 cut(s)	9, 68, 69
AsuC2I	CCSGG	4 cut(s)	13, 72, 73, 266
AsuHPI	GGTGA	2 cut(s)	365, 724
AvaI	CYCGRG	3 cut(s)	71, 182, 470
BaeGI	GKGCMC	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	230, 261
BanII	GRGCYC	3 cut(s)	40, 72, 477
BbsI	GAAGAC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	3 cut(s)	101, 485, 765
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	4 cut(s)	13, 72, 73, 266
BcoDI	GTCTC	4 cut(s)	148, 159, 617, 700
BfaI	CTAG	1 cut(s)	678
BisI	GCNGC	3 cut(s)	367, 521, 629
BlsI	GCNGC	3 cut(s)	368, 522, 630
Bme1390I	CCNGG	5 cut(s)	13, 58, 72, 73, 266
BmeT110I	CYCGRG	3 cut(s)	71, 182, 470
BmgT120I	GGNCC	3 cut(s)	9, 68, 69
BmiI	GGNNCC	4 cut(s)	70, 232, 263, 568
BmrFI	CCNGG	5 cut(s)	13, 58, 72, 73, 266
BmsI	GCATC	3 cut(s)	38, 134, 585
BpiI	GAAGAC	1 cut(s)	610
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	1 cut(s)	556
BpuMI	CCSGG	4 cut(s)	13, 72, 73, 266
BsaBI	GATNNNNATC	1 cut(s)	736
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	7 cut(s)	5, 28, 56, 71, 72, 349, 554
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 34, 216, 439, 442, 705
Bse1I	ACTGG	1 cut(s)	542
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	7 cut(s)	5, 28, 56, 71, 72, 349, 554
BseGI	GGATG	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	736
BseLI	CCNNNNNNNGG	6 cut(s)	11, 34, 216, 439, 442, 705
BseMI	GCAATG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	542
BsePI	GCGCGC	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	406, 445
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	2 cut(s)	293, 395
BshFI	GGCC	2 cut(s)	11, 70
BshNI	GGYRCC	2 cut(s)	230, 261
BsiHKCI	CYCGRG	3 cut(s)	71, 182, 470
BsiSI	CCGG	4 cut(s)	12, 72, 266, 420
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	6 cut(s)	11, 34, 216, 439, 442, 705
BsmAI	GTCTC	4 cut(s)	148, 159, 617, 700
BsmBI	CGTCTC	2 cut(s)	617, 700
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	11, 70
BsoBI	CYCGRG	3 cut(s)	71, 182, 470
Bsp120I	GGGCCC	1 cut(s)	68
Bsp1286I	GDGCHC	3 cut(s)	40, 72, 477
Bsp143I	GATC	4 cut(s)	225, 546, 633, 724
Bsp19I	CCATGG	2 cut(s)	5, 28
BspACI	CCGC	6 cut(s)	33, 366, 433, 466, 521, 699
BspANI	GGCC	2 cut(s)	11, 70
BspFNI	CGCG	2 cut(s)	293, 395
BspLI	GGNNCC	4 cut(s)	70, 232, 263, 568
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	2 cut(s)	230, 261
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	7 cut(s)	5, 28, 56, 71, 72, 349, 554
BssHII	GCGCGC	1 cut(s)	291
BssMI	GATC	4 cut(s)	225, 546, 633, 724
BssNI	GRCGYC	1 cut(s)	527
BssT1I	CCWWGG	3 cut(s)	5, 28, 349
Bst2UI	CCWGG	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	293
BstDSI	CCRYGG	2 cut(s)	5, 28
BstENI	CCTNNNNNAGG	2 cut(s)	214, 440
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	2 cut(s)	293, 395
BstHHI	GCGC	3 cut(s)	293, 295, 520
BstKTI	GATC	4 cut(s)	228, 549, 636, 727
BstMAI	GTCTC	4 cut(s)	148, 159, 617, 700
BstMBI	GATC	4 cut(s)	225, 546, 633, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 83, 122
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	5 cut(s)	11, 56, 70, 71, 264
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	2 cut(s)	293, 395
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	11, 70
BtgI	CCRYGG	2 cut(s)	5, 28
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	3 cut(s)	293, 295, 520
Cfr13I	GGNCC	3 cut(s)	9, 68, 69
Cfr9I	CCCGGG	1 cut(s)	71
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	5 cut(s)	231, 262, 397, 591, 753
CviAII	CATG	4 cut(s)	6, 29, 178, 378
CviQI	GTAC	5 cut(s)	231, 262, 397, 591, 753
DpnI	GATC	4 cut(s)	227, 548, 635, 726
DpnII	GATC	4 cut(s)	225, 546, 633, 724
EciI	GGCGGA	2 cut(s)	422, 688
Eco130I	CCWWGG	3 cut(s)	5, 28, 349
Eco24I	GRGCYC	3 cut(s)	40, 72, 477
Eco88I	CYCGRG	3 cut(s)	71, 182, 470
EcoNI	CCTNNNNNAGG	2 cut(s)	214, 440
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	3 cut(s)	5, 28, 349
EcoT38I	GRGCYC	3 cut(s)	40, 72, 477
ErhI	CCWWGG	3 cut(s)	5, 28, 349
Esp3I	CGTCTC	2 cut(s)	617, 700
FaeI	CATG	4 cut(s)	9, 32, 181, 381
FaiI	YATR	9 cut(s)	7, 30, 42, 44, 122, 179, 189, 245, 379
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	4 cut(s)	5, 28, 177, 377
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	42
Fnu4HI	GCNGC	3 cut(s)	367, 521, 629
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	3 cut(s)	40, 72, 477
Fsp4HI	GCNGC	3 cut(s)	367, 521, 629
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	3 cut(s)	292, 294, 519
GluI	GCNGC	3 cut(s)	367, 521, 629
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	2 cut(s)	11, 70
HapII	CCGG	4 cut(s)	12, 72, 266, 420
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	3 cut(s)	293, 295, 520
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	4 cut(s)	9, 32, 181, 381
Hin6I	GCGC	3 cut(s)	291, 293, 518
HinP1I	GCGC	3 cut(s)	291, 293, 518
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	7 cut(s)	167, 452, 561, 615, 732, 748, 762
HpaII	CCGG	4 cut(s)	12, 72, 266, 420
HphI	GGTGA	2 cut(s)	365, 724
Hpy166II	GTNNAC	3 cut(s)	18, 463, 655
Hpy188I	TCNGA	5 cut(s)	130, 566, 731, 747, 767
Hpy188III	TCNNGA	4 cut(s)	19, 607, 622, 641
Hpy8I	GTNNAC	3 cut(s)	18, 463, 655
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	2 cut(s)	233, 604
HpyCH4IV	ACGT	2 cut(s)	307, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 83, 122
HpySE526I	ACGT	2 cut(s)	307, 527
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	4 cut(s)	9, 32, 181, 381
HspAI	GCGC	3 cut(s)	291, 293, 518
KpnI	GGTACC	2 cut(s)	234, 265
Kzo9I	GATC	4 cut(s)	225, 546, 633, 724
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	3 cut(s)	38, 134, 585
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	2 cut(s)	307, 527
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	227, 548, 635, 726
MboI	GATC	4 cut(s)	225, 546, 633, 724
MboII	GAAGA	4 cut(s)	143, 167, 610, 732
MhlI	GDGCHC	3 cut(s)	40, 72, 477
MluCI	AATT	2 cut(s)	356, 388
MlyI	GAGTC	5 cut(s)	161, 446, 624, 742, 756
MmeI	TCCRAC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	389
MspA1I	CMGCKG	2 cut(s)	523, 631
MspI	CCGG	4 cut(s)	12, 72, 266, 420
MspR9I	CCNGG	5 cut(s)	13, 58, 72, 73, 266
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	2 cut(s)	293, 395
MwoI	GCNNNNNNNGC	3 cut(s)	67, 83, 122
NciI	CCSGG	4 cut(s)	13, 72, 73, 266
NcoI	CCATGG	2 cut(s)	5, 28
NdeI	CATATG	1 cut(s)	42
NdeII	GATC	4 cut(s)	225, 546, 633, 724
NlaIII	CATG	4 cut(s)	9, 32, 181, 381
NlaIV	GGNNCC	4 cut(s)	70, 232, 263, 568
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	326
PaeR7I	CTCGAG	2 cut(s)	182, 470
PalAI	GGCGCGCC	1 cut(s)	291
PauI	GCGCGC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	3 cut(s)	399, 540, 757
PctI	GAATGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	561, 732
PkrI	GCNGC	3 cut(s)	368, 522, 630
PleI	GAGTC	5 cut(s)	161, 446, 623, 742, 756
PpsI	GAGTC	5 cut(s)	161, 446, 623, 742, 756
Psp1406I	AACGTT	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	4 cut(s)	70, 232, 263, 568
PspOMI	GGGCCC	1 cut(s)	68
PspPI	GGNCC	3 cut(s)	9, 68, 69
PspXI	VCTCGAGB	2 cut(s)	182, 470
PteI	GCGCGC	1 cut(s)	291
PvuII	CAGCTG	1 cut(s)	631
RsaI	GTAC	5 cut(s)	232, 263, 398, 592, 754
RsaNI	GTAC	5 cut(s)	231, 262, 397, 591, 753
SatI	GCNGC	3 cut(s)	367, 521, 629
Sau3AI	GATC	4 cut(s)	225, 546, 633, 724
Sau96I	GGNCC	3 cut(s)	9, 68, 69
SchI	GAGTC	5 cut(s)	161, 446, 624, 742, 756
ScrFI	CCNGG	5 cut(s)	13, 58, 72, 73, 266
SduI	GDGCHC	3 cut(s)	40, 72, 477
SfaNI	GCATC	3 cut(s)	38, 134, 585
Sfr274I	CTCGAG	2 cut(s)	182, 470
SgsI	GGCGCGCC	1 cut(s)	291
SlaI	CTCGAG	2 cut(s)	182, 470
SmaI	CCCGGG	1 cut(s)	73
SmlI	CTYRAG	2 cut(s)	182, 470
SmoI	CTYRAG	2 cut(s)	182, 470
Sse9I	AATT	2 cut(s)	356, 388
SsiI	CCGC	6 cut(s)	33, 366, 433, 466, 521, 699
SspMI	CTAG	1 cut(s)	678
StyD4I	CCNGG	5 cut(s)	11, 56, 70, 71, 264
StyI	CCWWGG	3 cut(s)	5, 28, 349
TaiI	ACGT	2 cut(s)	310, 530
TasI	AATT	2 cut(s)	356, 388
TauI	GCSGC	2 cut(s)	369, 523
TfiI	GAWTC	2 cut(s)	561, 732
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	628
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	3 cut(s)	448, 472, 682
TspMI	CCCGGG	1 cut(s)	71
XagI	CCTNNNNNAGG	2 cut(s)	214, 440
XapI	RAATTY	2 cut(s)	356, 388
XhoI	CTCGAG	2 cut(s)	182, 470
XmaI	CCCGGG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	678
ZraI	GACGTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.