Rmu_sc0000698.1_g000120

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000698.1
OG0013778
Physical Location & Seq
Reverse (-)
492058 .. 492513
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000698.1_g000120.1.cds

Sequence Viewer

Length: 351 bp
atgatcgcgaattcagaaatcaatttagagattaagagggaaagacctggtggtaatcttcggaaggaacaaccaaggcgtcaagaggaggagagtgagacgccattagagacctctgtgggacccgagcccgacatggctgcggcgcgcagcagcagcaaggacgagtggacctgcgagcttcagttgattcccagcggtggtctggaggccgtgatcggatcgggcggccggagatgcggcgggcttggattggaggacttggagaccatgctgtccgaaacggcggcgtctccgggtcaagaccagtcgctgctctggtggatcttaggcgacgtggacgacgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

116

Amino Acids

12.57

Weight (kDa)

4.3

Isoelectric Point (pI)

75.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 182
AccII CGCG 3 cut(s) 8, 148, 347
AciI CCGC 6 cut(s) 143, 198, 228, 240, 243, 287
AclWI GGATC 2 cut(s) 229, 332
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 3 cut(s) 79, 101, 290
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 345
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 4 cut(s) 92, 104, 260, 297
AlwI GGATC 2 cut(s) 229, 332
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 2 cut(s) 210, 229
ApeKI GCWGC 5 cut(s) 140, 150, 153, 156, 313
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 2 cut(s) 148, 150
AspS9I GGNCC 2 cut(s) 122, 171
AsuC2I CCSGG 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 122, 171
BanII GRGCYC 1 cut(s) 132
BbvI GCAGC 5 cut(s) 127, 162, 165, 168, 300
BceAI ACGGC 2 cut(s) 197, 300
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 4 cut(s) 92, 104, 260, 297
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 9 cut(s) 141, 144, 151, 154, 157, 229, 241, 288, 314
BlsI GCNGC 9 cut(s) 142, 145, 152, 155, 158, 230, 242, 289, 315
Bme1390I CCNGG 2 cut(s) 48, 297
Bme18I GGWCC 2 cut(s) 122, 171
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 2 cut(s) 122, 171
BmiI GGNNCC 2 cut(s) 123, 124
BmrFI CCNGG 2 cut(s) 48, 297
BmsI GCATC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 297
BsaHI GRCGYC 3 cut(s) 79, 101, 290
BsaI GGTCTC 2 cut(s) 104, 260
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 307
BsePI GCGCGC 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 101, 104
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 5 cut(s) 127, 162, 165, 168, 300
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 3 cut(s) 8, 148, 347
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 212, 231
BsiEI CGRYCG 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 2 cut(s) 232, 296
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 4 cut(s) 92, 104, 260, 297
BsmBI CGTCTC 2 cut(s) 92, 297
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 212, 231
Bso31I GGTCTC 2 cut(s) 104, 260
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 4 cut(s) 3, 216, 221, 324
Bsp68I TCGCGA 1 cut(s) 8
BspACI CCGC 6 cut(s) 143, 198, 228, 240, 243, 287
BspANI GGCC 2 cut(s) 212, 231
BspFNI CGCG 3 cut(s) 8, 148, 347
BspLI GGNNCC 2 cut(s) 123, 124
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 229, 332
BspTNI GGTCTC 2 cut(s) 104, 260
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 74
BssHII GCGCGC 1 cut(s) 146
BssMI GATC 4 cut(s) 3, 216, 221, 324
BssNI GRCGYC 3 cut(s) 79, 101, 290
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 48
BstACI GRCGYC 3 cut(s) 79, 101, 290
BstC8I GCNNGC 3 cut(s) 148, 179, 245
BstDEI CTNAG 1 cut(s) 328
BstFNI CGCG 3 cut(s) 8, 148, 347
BstHHI GCGC 2 cut(s) 148, 150
BstKTI GATC 4 cut(s) 6, 219, 224, 327
BstMAI GTCTC 4 cut(s) 92, 104, 260, 297
BstMBI GATC 4 cut(s) 3, 216, 221, 324
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 156, 237
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 2 cut(s) 46, 295
BstUI CGCG 3 cut(s) 8, 148, 347
BstV1I GCAGC 5 cut(s) 127, 162, 165, 168, 300
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 2 cut(s) 212, 231
BtrI CACGTC 1 cut(s) 337
BtuMI TCGCGA 1 cut(s) 8
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 3 cut(s) 148, 179, 245
CaiI CAGNNNCTG 1 cut(s) 313
CfoI GCGC 2 cut(s) 148, 150
Cfr13I GGNCC 2 cut(s) 122, 171
CseI GACGC 3 cut(s) 68, 109, 279
CsiI ACCWGGT 1 cut(s) 46
CviAII CATG 2 cut(s) 136, 271
CviJI RGCY 6 cut(s) 130, 140, 181, 212, 231, 247
CviKI_1 RGCY 6 cut(s) 130, 140, 181, 212, 231, 247
DdeI CTNAG 1 cut(s) 328
DpnI GATC 4 cut(s) 5, 218, 223, 326
DpnII GATC 4 cut(s) 3, 216, 221, 324
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 2 cut(s) 104, 260
Eco47I GGWCC 2 cut(s) 122, 171
Eco52I CGGCCG 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 2 cut(s) 92, 297
FaeI CATG 2 cut(s) 139, 274
FaiI YATR 2 cut(s) 137, 272
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 135, 270
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 9 cut(s) 141, 144, 151, 154, 157, 229, 241, 288, 314
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 9 cut(s) 141, 144, 151, 154, 157, 229, 241, 288, 314
GlaI GCGC 2 cut(s) 147, 149
GluI GCNGC 9 cut(s) 141, 144, 151, 154, 157, 229, 241, 288, 314
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 212, 231
HapII CCGG 2 cut(s) 232, 296
HgaI GACGC 3 cut(s) 68, 109, 279
HhaI GCGC 2 cut(s) 148, 150
Hin1I GRCGYC 3 cut(s) 79, 101, 290
Hin1II CATG 2 cut(s) 139, 274
Hin6I GCGC 2 cut(s) 146, 148
HinP1I GCGC 2 cut(s) 146, 148
HinfI GANTC 1 cut(s) 190
HpaII CCGG 2 cut(s) 232, 296
Hpy166II GTNNAC 2 cut(s) 171, 340
Hpy188I TCNGA 4 cut(s) 16, 63, 221, 280
Hpy188III TCNNGA 4 cut(s) 7, 83, 206, 302
Hpy8I GTNNAC 2 cut(s) 171, 340
Hpy99I CGWCG 2 cut(s) 338, 347
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 237
HpyF3I CTNAG 1 cut(s) 328
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 3 cut(s) 79, 101, 290
Hsp92II CATG 2 cut(s) 139, 274
HspAI GCGC 2 cut(s) 146, 148
KflI GGGWCCC 1 cut(s) 122
Kzo9I GATC 4 cut(s) 3, 216, 221, 324
LpnPI CCDG 9 cut(s) 33, 60, 187, 191, 208, 245, 304, 309, 320
Lsp1109I GCAGC 5 cut(s) 127, 162, 165, 168, 300
LweI GCATC 1 cut(s) 227
MabI ACCWGGT 1 cut(s) 46
MaeII ACGT 1 cut(s) 336
MalI GATC 4 cut(s) 5, 218, 223, 326
MboI GATC 4 cut(s) 3, 216, 221, 324
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 2 cut(s) 10, 22
MluI ACGCGT 1 cut(s) 345
MnlI CCTC 6 cut(s) 30, 79, 82, 124, 202, 250
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 2 cut(s) 232, 296
MspR9I CCNGG 2 cut(s) 48, 297
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 3 cut(s) 8, 148, 347
MwoI GCNNNNNNNGC 2 cut(s) 156, 237
NciI CCSGG 1 cut(s) 297
NdeII GATC 4 cut(s) 3, 216, 221, 324
NlaIII CATG 2 cut(s) 139, 274
NlaIV GGNNCC 2 cut(s) 123, 124
NruI TCGCGA 1 cut(s) 8
PauI GCGCGC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 9 cut(s) 142, 145, 152, 155, 158, 230, 242, 289, 315
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 123, 124
PspPI GGNCC 2 cut(s) 122, 171
PspPPI RGGWCCY 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 324
PteI GCGCGC 1 cut(s) 146
RruI TCGCGA 1 cut(s) 8
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 9 cut(s) 141, 144, 151, 154, 157, 229, 241, 288, 314
Sau3AI GATC 4 cut(s) 3, 216, 221, 324
Sau96I GGNCC 2 cut(s) 122, 171
ScrFI CCNGG 2 cut(s) 48, 297
SduI GDGCHC 1 cut(s) 132
SetI ASST 5 cut(s) 49, 116, 176, 183, 339
SexAI ACCWGGT 1 cut(s) 46
SfaNI GCATC 1 cut(s) 227
SinI GGWCC 2 cut(s) 122, 171
Sse9I AATT 2 cut(s) 10, 22
SsiI CCGC 6 cut(s) 143, 198, 228, 240, 243, 287
StyD4I CCNGG 2 cut(s) 46, 295
StyI CCWWGG 1 cut(s) 74
TaiI ACGT 1 cut(s) 339
TasI AATT 2 cut(s) 10, 22
TauI GCSGC 4 cut(s) 146, 231, 243, 290
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 5 cut(s) 140, 150, 153, 156, 313
VpaK11BI GGWCC 2 cut(s) 122, 171
XapI RAATTY 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.