Rmu_sc0004485.1_g000011

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004485.1
OG0013778
Physical Location & Seq
Forward (+)
66387 .. 67421
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004485.1_g000011.1.cds

Sequence Viewer

Length: 477 bp
ctgttgcagagtgggaacaacagtaactctcttgagtttgacggcaatgggggtctgggaatcgttgatcagggttccagtttcgaccacatcgaaagtagcgtttccggtcccaatttggggttctccggcggttctagtttgaatgggaaaatgggttttgtgcccagctcttctgggccactgaattacaaggtctcaaatgttgggttgatgaacaataatggcggcaacaacaacaacaagtccaatttctccaattcatcacttccagtttcactgcctcatggaatggtctatcataatcatcggcagagttgtggaagaagaagggaaaacttctgggagaagaaggaaatgcaagctttgcctgagaaagagtgcaagagagttgaacgcttggaacctataagaccccgccgagctgatgaagaaggacagccgagtgcatatagattaccaatagtattaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

158

Amino Acids

17.22

Weight (kDa)

8.66

Isoelectric Point (pI)

62.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 132, 228, 418
AfiI CCNNNNNNNGG 2 cut(s) 119, 120
AgsI TTSAA 2 cut(s) 145, 395
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 3 cut(s) 171, 365, 425
AluI AGCT 3 cut(s) 171, 365, 425
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 110, 179
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 58
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 138
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 179
BmiI GGNNCC 3 cut(s) 76, 112, 405
BpuEI CTTGAG 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 120
Bse1I ACTGG 2 cut(s) 78, 272
Bse3DI GCAATG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 119, 120
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 78, 272
BseSI GKGCMC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 108, 129
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 119, 120
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 3 cut(s) 132, 228, 418
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 76, 112, 405
BspQI GCTCTTC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 2 cut(s) 78, 272
BssMI GATC 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 372
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 2 cut(s) 182, 278
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 110, 179
CviAII CATG 2 cut(s) 287, 474
CviJI RGCY 5 cut(s) 171, 181, 365, 425, 442
CviKI_1 RGCY 5 cut(s) 171, 181, 365, 425, 442
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 110
FaeI CATG 2 cut(s) 290, 477
FaiI YATR 6 cut(s) 288, 303, 410, 451, 453, 475
FaqI GGGAC 1 cut(s) 96
FatI CATG 2 cut(s) 286, 473
FauI CCCGC 1 cut(s) 425
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 229
GsaI CCCAGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 108, 129
Hin1II CATG 2 cut(s) 290, 477
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 1 cut(s) 60
HpaII CCGG 2 cut(s) 108, 129
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 324, 346, 428
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 7, 361, 384, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 2 cut(s) 290, 477
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 1 cut(s) 67
LguI GCTCTTC 1 cut(s) 178
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 5 cut(s) 165, 336, 339, 361, 443
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 4 cut(s) 115, 187, 250, 259
MnlI CCTC 1 cut(s) 294
MseI TTAA 1 cut(s) 470
MspI CCGG 2 cut(s) 108, 129
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 290, 477
NlaIV GGNNCC 3 cut(s) 76, 112, 405
NmeAIII GCCGAG 2 cut(s) 446, 468
PciSI GCTCTTC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 99
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 76, 112, 405
PspPI GGNCC 2 cut(s) 110, 179
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 2 cut(s) 110, 179
SduI GDGCHC 1 cut(s) 168
SetI ASST 5 cut(s) 173, 198, 367, 409, 427
SinI GGWCC 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 115, 187, 250, 259
SsiI CCGC 3 cut(s) 132, 228, 418
SspMI CTAG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 84, 93
TasI AATT 4 cut(s) 115, 187, 250, 259
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 2 cut(s) 189, 285
TspDTI ATGAA 3 cut(s) 230, 252, 444
TspRI CASTG 2 cut(s) 189, 285
VpaK11BI GGWCC 1 cut(s) 110
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.