Rh5AG433700

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013778
Physical Location & Seq
Reverse (-)
74629233 .. 74629856
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG433700.1

Sequence Viewer

Length: 216 bp
ATGGCGGCGGCGCGCAGCAGCAGCAAGGATGAGTGGACCTGCGAGCTTCAGTCGATTCCCAGCGGCGGTCTGGAGGCCGTGACCGGATCGGGCGGCGGGAGATACGGCGGGCTTGGATTGGAGGACTTGGAGACCATGCTGTCCGAAACGGTGGCGTCTCCGGGTCAAGACCAGTCGCTGCTCCGGTGGATCTCAGGCGACGTGGACGACGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

71

Amino Acids

7.32

Weight (kDa)

4.05

Isoelectric Point (pI)

63.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 47
AccII CGCG 2 cut(s) 13, 212
AciI CCGC 7 cut(s) 5, 8, 63, 66, 93, 96, 108
AclWI GGATC 2 cut(s) 94, 197
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 210
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 125, 162
AlwI GGATC 2 cut(s) 94, 197
AlwNI CAGNNNCTG 1 cut(s) 178
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 4 cut(s) 15, 18, 21, 178
AspLEI GCGC 2 cut(s) 13, 15
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 27, 30, 33, 165
BceAI ACGGC 2 cut(s) 62, 121
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 125, 162
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 8 cut(s) 6, 9, 16, 19, 22, 64, 94, 179
BlsI GCNGC 8 cut(s) 7, 10, 17, 20, 23, 65, 95, 180
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 36
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 125
BsaWI WCCGGW 2 cut(s) 83, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 172
BsePI GCGCGC 1 cut(s) 11
BseXI GCAGC 4 cut(s) 27, 30, 33, 165
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 13, 212
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 3 cut(s) 84, 161, 184
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 2 cut(s) 125, 162
BsmBI CGTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 86, 189
BspACI CCGC 7 cut(s) 5, 8, 63, 66, 93, 96, 108
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 206
BspFNI CGCG 2 cut(s) 13, 212
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 2 cut(s) 94, 197
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 172
BssHII GCGCGC 1 cut(s) 11
BssMI GATC 2 cut(s) 86, 189
BssNI GRCGYC 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 13, 44, 110
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 2 cut(s) 13, 212
BstHHI GCGC 2 cut(s) 13, 15
BstKTI GATC 2 cut(s) 89, 192
BstMAI GTCTC 2 cut(s) 125, 162
BstMBI GATC 2 cut(s) 86, 189
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 160
BstUI CGCG 2 cut(s) 13, 212
BstV1I GCAGC 4 cut(s) 27, 30, 33, 165
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 77
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 3 cut(s) 13, 44, 110
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 2 cut(s) 13, 15
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 144
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 46, 77, 112
CviKI_1 RGCY 3 cut(s) 46, 77, 112
DdeI CTNAG 1 cut(s) 193
DpnI GATC 2 cut(s) 88, 191
DpnII GATC 2 cut(s) 86, 189
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 1 cut(s) 139
FaiI YATR 1 cut(s) 137
FatI CATG 1 cut(s) 135
FauI CCCGC 2 cut(s) 89, 101
Fnu4HI GCNGC 8 cut(s) 6, 9, 16, 19, 22, 64, 94, 179
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 8 cut(s) 6, 9, 16, 19, 22, 64, 94, 179
GlaI GCGC 2 cut(s) 12, 14
GluI GCNGC 8 cut(s) 6, 9, 16, 19, 22, 64, 94, 179
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 77
HapII CCGG 3 cut(s) 84, 161, 184
HgaI GACGC 1 cut(s) 144
HhaI GCGC 2 cut(s) 13, 15
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 2 cut(s) 11, 13
HinP1I GCGC 2 cut(s) 11, 13
HinfI GANTC 1 cut(s) 55
HpaII CCGG 3 cut(s) 84, 161, 184
Hpy166II GTNNAC 2 cut(s) 36, 205
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 71, 167
Hpy8I GTNNAC 2 cut(s) 36, 205
Hpy99I CGWCG 2 cut(s) 203, 212
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 2 cut(s) 11, 13
Kzo9I GATC 2 cut(s) 86, 189
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 8 cut(s) 52, 56, 73, 97, 174, 180, 185, 197
Lsp1109I GCAGC 4 cut(s) 27, 30, 33, 165
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 88, 191
MboI GATC 2 cut(s) 86, 189
MflI RGATCY 1 cut(s) 189
MluI ACGCGT 1 cut(s) 210
MnlI CCTC 2 cut(s) 67, 115
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 3 cut(s) 84, 161, 184
MspR9I CCNGG 1 cut(s) 162
MvnI CGCG 2 cut(s) 13, 212
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 162
NdeII GATC 2 cut(s) 86, 189
NlaIII CATG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 79
PauI GCGCGC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 8 cut(s) 7, 10, 17, 20, 23, 65, 95, 180
PspFI CCCAGC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 189
PteI GCGCGC 1 cut(s) 11
SatI GCNGC 8 cut(s) 6, 9, 16, 19, 22, 64, 94, 179
Sau3AI GATC 2 cut(s) 86, 189
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 162
SetI ASST 3 cut(s) 41, 48, 204
SinI GGWCC 1 cut(s) 36
SsiI CCGC 7 cut(s) 5, 8, 63, 66, 93, 96, 108
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 53
TauI GCSGC 4 cut(s) 8, 11, 66, 96
TfiI GAWTC 1 cut(s) 55
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 4 cut(s) 15, 18, 21, 178
Tsp45I GTSAC 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.