Rh6CG459200

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013778
Physical Location & Seq
Forward (+)
63378868 .. 63379149
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG459200.1

Sequence Viewer

Length: 282 bp
ATGTTGTCCGAAACGGCGGCGTCTCCGGGTCAAGACCAATCGCTTCTCCCGTGGATCTCAGGCGACGTGGACGACGCGTCGTTTGGGCTAAAGCAGCTGTTGCAGAGTGGGAACAACCGTAACTCTCTTGAGTTTGCGACAATGCGGGTCTGGGAATGGTTGATCAGGGTTCCGGTTCCGACCACATCGGAAGCAGCGTTTCTGGTCCCAATTTGGGGTTCTCCGGCGGTTTTAGTTTCAATGGGAAAATGGGTTTTGTGCCCAGCTCTTCTGGGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

93

Amino Acids

10.13

Weight (kDa)

4.77

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 4 cut(s) 17, 145, 227, 277
AclWI GGATC 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 214, 215
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 1 cut(s) 240
AhdI GACNNNNNGTC 1 cut(s) 76
AjiI CACGTC 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AluBI AGCT 2 cut(s) 97, 266
AluI AGCT 2 cut(s) 97, 266
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 62
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 94, 194
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspS9I GGNCC 2 cut(s) 205, 274
AsuC2I CCSGG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 106, 206
BceAI ACGGC 1 cut(s) 30
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 4 cut(s) 18, 95, 195, 277
BlsI GCNGC 4 cut(s) 19, 96, 196, 278
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 205, 274
BmiI GGNNCC 3 cut(s) 171, 177, 207
BmrFI CCNGG 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 215
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 214, 215
BseMII CTCAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 106, 206
BseYI CCCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 3 cut(s) 26, 173, 224
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 214, 215
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 54, 162
BspACI CCGC 4 cut(s) 17, 145, 227, 277
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 3 cut(s) 171, 177, 207
BspPI GGATC 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 54, 162
BssNI GRCGYC 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 2 cut(s) 57, 165
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 54, 162
BstMWI GCNNNNNNNGC 2 cut(s) 94, 100
BstSCI CCNGG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 106, 206
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 50
BtrI CACGTC 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 205, 274
CseI GACGC 3 cut(s) 9, 66, 83
CviJI RGCY 4 cut(s) 88, 97, 266, 276
CviKI_1 RGCY 4 cut(s) 88, 97, 266, 276
DdeI CTNAG 1 cut(s) 58
DpnI GATC 2 cut(s) 56, 164
DpnII GATC 2 cut(s) 54, 162
DriI GACNNNNNGTC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 273
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 27
FaqI GGGAC 1 cut(s) 191
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 18, 95, 195, 277
Fsp4HI GCNGC 4 cut(s) 18, 95, 195, 277
GluI GCNGC 4 cut(s) 18, 95, 195, 277
GsaI CCCAGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 276
HapII CCGG 3 cut(s) 26, 173, 224
HgaI GACGC 3 cut(s) 9, 66, 83
Hin1I GRCGYC 1 cut(s) 20
HpaII CCGG 3 cut(s) 26, 173, 224
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 10, 180, 190
Hpy188III TCNNGA 2 cut(s) 32, 128
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 3 cut(s) 68, 77, 82
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 100
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 2 cut(s) 54, 162
LguI GCTCTTC 1 cut(s) 273
LpnPI CCDG 9 cut(s) 39, 45, 136, 151, 186, 188, 237, 257, 276
Lsp1109I GCAGC 2 cut(s) 106, 206
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 56, 164
MboI GATC 2 cut(s) 54, 162
MboII GAAGA 1 cut(s) 260
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 1 cut(s) 210
MluI ACGCGT 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 203
MspA1I CMGCKG 2 cut(s) 97, 279
MspI CCGG 3 cut(s) 26, 173, 224
MspR9I CCNGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 94, 100
NciI CCSGG 1 cut(s) 27
NdeII GATC 2 cut(s) 54, 162
NlaIV GGNNCC 3 cut(s) 171, 177, 207
PciSI GCTCTTC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 194
PkrI GCNGC 4 cut(s) 19, 96, 196, 278
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 171, 177, 207
PspPI GGNCC 2 cut(s) 205, 274
PsuI RGATCY 1 cut(s) 54
PvuII CAGCTG 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 273
SatI GCNGC 4 cut(s) 18, 95, 195, 277
Sau3AI GATC 2 cut(s) 54, 162
Sau96I GGNCC 2 cut(s) 205, 274
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 263
SetI ASST 3 cut(s) 69, 99, 268
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 210
SsiI CCGC 4 cut(s) 17, 145, 227, 277
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 69
TasI AATT 1 cut(s) 210
TauI GCSGC 2 cut(s) 20, 279
TseI GCWGC 2 cut(s) 94, 194
VpaK11BI GGWCC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.