Rh3DG186300

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013778
Physical Location & Seq
Forward (+)
16563528 .. 16563734
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG186300.1

Sequence Viewer

Length: 207 bp
ATGGCGGCGTCTCCAGGTCAAGACCAGTCGCTGCTCCGGTGGATCTCGAGCGACGTGGACAACGTGTCTTTTGGGATCAAGCAGATTCATGCGAAGGGAGGAGATGTAGGAGGCCACCACCAGCTAGGAATCATCGGCGCCGGAGATATGTATAATTATAAGGCTGCTTCCGGGTATCCACACGCAAGGGCTGAAAGTGGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

68

Amino Acids

7.11

Weight (kDa)

6.0

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 137
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 50, 83
AcyI GRCGYC 2 cut(s) 8, 138
AflIII ACRYGT 1 cut(s) 63
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 50, 83
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 31, 164
AspLEI GCGC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 18, 151
BciT130I CCWGG 1 cut(s) 15
BciVI GTATCC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 141
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 3 cut(s) 6, 32, 165
BlsI GCNGC 3 cut(s) 7, 33, 166
Bme1390I CCNGG 2 cut(s) 15, 172
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 46
BmgBI CACGTC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 2 cut(s) 15, 172
BpuMI CCSGG 1 cut(s) 172
BsaHI GRCGYC 2 cut(s) 8, 138
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 18, 151
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 3 cut(s) 37, 141, 171
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 46
Bsp143I GATC 2 cut(s) 42, 75
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 2 cut(s) 50, 83
BspT107I GGYRCC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 25
BssMI GATC 2 cut(s) 42, 75
BssNI GRCGYC 2 cut(s) 8, 138
Bst2UI CCWGG 1 cut(s) 15
BstACI GRCGYC 2 cut(s) 8, 138
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 45, 78
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 42, 75
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 13, 170
BstV1I GCAGC 2 cut(s) 18, 151
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 114
BtrI CACGTC 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 1 cut(s) 140
CviAII CATG 1 cut(s) 89
CviJI RGCY 4 cut(s) 114, 124, 164, 191
CviKI_1 RGCY 4 cut(s) 114, 124, 164, 191
DinI GGCGCC 1 cut(s) 139
DpnI GATC 2 cut(s) 44, 77
DpnII GATC 2 cut(s) 42, 75
DriI GACNNNNNGTC 1 cut(s) 64
Eam1105I GACNNNNNGTC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 1 cut(s) 92
FaiI YATR 4 cut(s) 90, 149, 153, 159
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 6, 32, 165
Fsp4HI GCNGC 3 cut(s) 6, 32, 165
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 6, 32, 165
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 114
HapII CCGG 3 cut(s) 37, 141, 171
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 2 cut(s) 8, 138
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 2 cut(s) 85, 129
HpaII CCGG 3 cut(s) 37, 141, 171
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 20, 46
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 54, 63
HpySE526I ACGT 2 cut(s) 54, 63
Hsp92I GRCGYC 2 cut(s) 8, 138
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 138
KasI GGCGCC 1 cut(s) 137
Kzo9I GATC 2 cut(s) 42, 75
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 6 cut(s) 27, 38, 50, 134, 154, 184
Lsp1109I GCAGC 2 cut(s) 18, 151
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 54, 63
MalI GATC 2 cut(s) 44, 77
MboI GATC 2 cut(s) 42, 75
MflI RGATCY 1 cut(s) 42
MluCI AATT 1 cut(s) 154
Mly113I GGCGCC 1 cut(s) 138
MnlI CCTC 2 cut(s) 92, 104
MseI TTAA 1 cut(s) 205
MspI CCGG 3 cut(s) 37, 141, 171
MspR9I CCNGG 2 cut(s) 15, 172
MvaI CCWGG 1 cut(s) 15
NarI GGCGCC 1 cut(s) 138
NciI CCSGG 1 cut(s) 172
NdeII GATC 2 cut(s) 42, 75
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 2 cut(s) 85, 129
PkrI GCNGC 3 cut(s) 7, 33, 166
PluTI GGCGCC 1 cut(s) 141
PsiI TTATAA 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 42
SaqAI TTAA 1 cut(s) 205
SatI GCNGC 3 cut(s) 6, 32, 165
Sau3AI GATC 2 cut(s) 42, 75
ScrFI CCNGG 2 cut(s) 15, 172
SetI ASST 4 cut(s) 19, 57, 66, 126
SfoI GGCGCC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 1 cut(s) 154
SsiI CCGC 1 cut(s) 5
SspDI GGCGCC 1 cut(s) 137
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 13, 170
TaiI ACGT 2 cut(s) 57, 66
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 154
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 85, 129
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TseI GCWGC 2 cut(s) 31, 164
TspDTI ATGAA 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 46
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.