Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013778

Physical Location & Seq

Genomic Coordinates Forward (+)

62000573 .. 62001830

Gene Structure 1258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG446100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGGAGGGCTTGGGTTGGAGGACTAGGAGGGACCATGTTGTCCGAAACGGCGGCGTCTCCGGGTCAAGACCAATCGCTGCTCCGGTGGATCTCGGGCGACGTGGACGACGCATCATTTGGGCTAAAGCAGCTGTTGCAGAGTGGGAACAACCGTAACTCTCTTGAGTTTGACGACAATGCGGGTCTGGGAATGGTTGATCAGGGTTCCGGTTCCGACCACATCGGAAGTAGCGTTTCCGATCCCAATTTGGGGTTCTCCGGCGGTTCTAGTTTCAATGGGAAAATGGGTTTTGTGCCCAGCTCTTCTGGGCCGCTGAATTACAAGGTTTCAAATGTTGGGTTGATGAACAATAATGGCGGCAACAACAACAACAACTCCAATTTCTCCAATTCAGCACTTCCAGTTTCGCTGCCTCATGGAATGGTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

144

Amino Acids

14.92

Weight (kDa)

4.56

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013778)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035838
rosa_multiflora	Rmu_sc0000698.1_g000120 Rmu_sc0002978.1_g000023 Rmu_sc0004485.1_g000010 Rmu_sc0004485.1_g000011 Rmu_sc0007021.1_g000015 Rmu_sc0028406.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017100
rosa_samantha	Rh1CG113400 Rh3BG189800 Rh3DG186300 Rh5AG288100 Rh5AG433700 Rh5CG549800 Rh6BG455700 Rh6CG459200 Rh6DG446100 Rh7CG424700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
AciI	CCGC	5 cut(s)	53, 182, 264, 314, 360
AclWI	GGATC	2 cut(s)	98, 236
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	251, 252
AgsI	TTSAA	2 cut(s)	277, 333
AjiI	CACGTC	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	2 cut(s)	133, 303
AluI	AGCT	2 cut(s)	133, 303
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	98, 236
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	79, 130, 412
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspS9I	GGNCC	2 cut(s)	33, 311
AsuC2I	CCSGG	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	66, 142, 399
BceAI	ACGGC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	26, 270
BisI	GCNGC	6 cut(s)	54, 80, 131, 314, 361, 413
BlsI	GCNGC	6 cut(s)	55, 81, 132, 315, 362, 414
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	33, 311
BmiI	GGNNCC	3 cut(s)	34, 208, 214
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	56
BsaWI	WCCGGW	2 cut(s)	84, 209
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 252
Bse1I	ACTGG	1 cut(s)	404
BseLI	CCNNNNNNNGG	2 cut(s)	251, 252
BseNI	ACTGG	1 cut(s)	404
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	66, 142, 399
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	4 cut(s)	62, 85, 210, 261
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	251, 252
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	90, 199, 241
BspACI	CCGC	5 cut(s)	53, 182, 264, 314, 360
BspANI	GGCC	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	34, 208, 214
BspPI	GGATC	2 cut(s)	98, 236
BspQI	GCTCTTC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	404
BssMI	GATC	3 cut(s)	90, 199, 241
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	93, 202, 244
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	90, 199, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 136
BstSCI	CCNGG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	66, 142, 399
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	313
BtrI	CACGTC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	33, 311
CseI	GACGC	2 cut(s)	45, 119
CviAII	CATG	2 cut(s)	37, 419
CviJI	RGCY	5 cut(s)	11, 124, 133, 303, 313
CviKI_1	RGCY	5 cut(s)	11, 124, 133, 303, 313
DpnI	GATC	3 cut(s)	92, 201, 243
DpnII	GATC	3 cut(s)	90, 199, 241
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	40, 422
FaiI	YATR	2 cut(s)	38, 420
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	36, 418
FauI	CCCGC	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	6 cut(s)	54, 80, 131, 314, 361, 413
Fsp4HI	GCNGC	6 cut(s)	54, 80, 131, 314, 361, 413
FspBI	CTAG	2 cut(s)	26, 270
GluI	GCNGC	6 cut(s)	54, 80, 131, 314, 361, 413
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	4 cut(s)	62, 85, 210, 261
HgaI	GACGC	2 cut(s)	45, 119
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	40, 422
HpaII	CCGG	4 cut(s)	62, 85, 210, 261
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	4 cut(s)	46, 217, 227, 241
Hpy188III	TCNNGA	2 cut(s)	68, 164
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	104, 113
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 136
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	40, 422
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	90, 199, 241
LguI	GCTCTTC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	9 cut(s)	75, 98, 173, 188, 223, 274, 294, 313, 417
Lsp1109I	GCAGC	3 cut(s)	66, 142, 399
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	2 cut(s)	26, 270
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	3 cut(s)	92, 201, 243
MboI	GATC	3 cut(s)	90, 199, 241
MboII	GAAGA	1 cut(s)	297
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	247, 319, 382, 391
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	14, 23, 426
MspA1I	CMGCKG	2 cut(s)	133, 316
MspI	CCGG	4 cut(s)	62, 85, 210, 261
MspR9I	CCNGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	130, 136
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	3 cut(s)	90, 199, 241
NlaIII	CATG	2 cut(s)	40, 422
NlaIV	GGNNCC	3 cut(s)	34, 208, 214
PciSI	GCTCTTC	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	55, 81, 132, 315, 362, 414
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	34, 208, 214
PspPI	GGNCC	2 cut(s)	33, 311
PsuI	RGATCY	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	310
SatI	GCNGC	6 cut(s)	54, 80, 131, 314, 361, 413
Sau3AI	GATC	3 cut(s)	90, 199, 241
Sau96I	GGNCC	2 cut(s)	33, 311
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	4 cut(s)	105, 135, 305, 330
SfaNI	GCATC	1 cut(s)	122
SinI	GGWCC	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	4 cut(s)	247, 319, 382, 391
SsiI	CCGC	5 cut(s)	53, 182, 264, 314, 360
SspMI	CTAG	2 cut(s)	26, 270
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	105
TasI	AATT	4 cut(s)	247, 319, 382, 391
TauI	GCSGC	3 cut(s)	56, 316, 363
TseI	GCWGC	3 cut(s)	79, 130, 412
TspDTI	ATGAA	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	33
XspI	CTAG	2 cut(s)	26, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.