Rh3BG189800

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013778
Physical Location & Seq
Reverse (-)
16726241 .. 16727078
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG189800.1

Sequence Viewer

Length: 207 bp
ATGGCATCTCCAGGTCAAGACCAGTCGCTGCTCAGGTGGAACTGGAGCGACGTGGACAACACGTCGTTTGGGATTAAGCAGATTCAGGAGAAGGGAGGAGATGTAGGAGGCCACCGCCGGCTAGGAATCATCGGCGCCGGAGATATGTATAATTGTGAGGCTACTTCCGGGTATCCACGCGCCGGGGCTGAAAGTGCAGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

68

Amino Acids

7.33

Weight (kDa)

4.75

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 60
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 2 cut(s) 52, 63
AjnI CCWGG 1 cut(s) 10
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 28
AspLEI GCGC 2 cut(s) 137, 182
AsuC2I CCSGG 2 cut(s) 169, 184
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 183
BcnI CCSGG 2 cut(s) 169, 184
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 138
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 3 cut(s) 12, 169, 184
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgBI CACGTC 2 cut(s) 52, 63
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 3 cut(s) 12, 169, 184
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 169, 184
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 22, 47
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 46
BseNI ACTGG 2 cut(s) 22, 47
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 4 cut(s) 118, 138, 168, 183
BslI CCNNNNNNNGG 1 cut(s) 182
BsnI GGCC 1 cut(s) 111
BspACI CCGC 1 cut(s) 115
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 2 cut(s) 22, 47
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 183
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 182
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 3 cut(s) 10, 167, 182
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 15
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 111
BtrI CACGTC 2 cut(s) 52, 63
Cac8I GCNNGC 1 cut(s) 119
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 2 cut(s) 137, 182
Cfr10I RCCGGY 1 cut(s) 117
CviJI RGCY 4 cut(s) 111, 121, 161, 188
CviKI_1 RGCY 4 cut(s) 111, 121, 161, 188
DdeI CTNAG 1 cut(s) 32
DinI GGCGCC 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 10
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
FaiI YATR 2 cut(s) 146, 150
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 122
GlaI GCGC 2 cut(s) 136, 181
GluI GCNGC 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 111
HapII CCGG 4 cut(s) 118, 138, 168, 183
HhaI GCGC 2 cut(s) 137, 182
Hin1I GRCGYC 1 cut(s) 135
Hin6I GCGC 2 cut(s) 135, 180
HinP1I GCGC 2 cut(s) 135, 180
HinfI GANTC 2 cut(s) 82, 126
HpaII CCGG 4 cut(s) 118, 138, 168, 183
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 17, 86
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 2 cut(s) 53, 67
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 51, 62
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 51, 62
Hsp92I GRCGYC 1 cut(s) 135
HspAI GCGC 2 cut(s) 135, 180
KasI GGCGCC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 117
KroNI GCCGGC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 9 cut(s) 19, 24, 28, 35, 71, 131, 151, 181, 196
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 122
MaeII ACGT 2 cut(s) 51, 62
MluCI AATT 1 cut(s) 151
Mly113I GGCGCC 1 cut(s) 135
MnlI CCTC 3 cut(s) 89, 101, 151
MroNI GCCGGC 1 cut(s) 117
MseI TTAA 1 cut(s) 75
MspI CCGG 4 cut(s) 118, 138, 168, 183
MspR9I CCNGG 3 cut(s) 12, 169, 184
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 194
NaeI GCCGGC 1 cut(s) 119
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 169, 184
NgoMIV GCCGGC 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 136
PdiI GCCGGC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 82, 126
PkrI GCNGC 1 cut(s) 30
PluTI GGCGCC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 28
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 29
ScrFI CCNGG 3 cut(s) 12, 169, 184
SetI ASST 4 cut(s) 16, 38, 54, 65
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 136
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 115
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 3 cut(s) 10, 167, 182
TaiI ACGT 2 cut(s) 54, 65
TasI AATT 1 cut(s) 151
TfiI GAWTC 2 cut(s) 82, 126
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 28
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.