Rmu_sc0028406.1_g000001

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028406.1
OG0013778
Physical Location & Seq
Reverse (-)
1 .. 1385
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028406.1_g000001.1.cds

Sequence Viewer

Length: 377 bp
atggaagagagagaagccagaggagactacagccggattctcatcaccggtcgccgctccaactccaagatcgtctactcgcctagcggcggtttggaggtggtgaccggattaggcagtgaaagatgcagtgggcttgggttggaggactgggagaccacactatctgagacgatggcatctccaggtcaagaccagtcgctgctcaggtggaactggagcgacgtggacaacacgtcgtttgggattaagcagattcaggagaaaggaggagatgtaggaggccaccgccggctaggaatcatcggcgccggagatatgtataattgtgaggctacttccgggtatccacacgcaggggctgaaagtggagattg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

125

Amino Acids

13.44

Weight (kDa)

4.78

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 75
AciI CCGC 4 cut(s) 55, 87, 90, 289
AcyI GRCGYC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 89, 356
AflIII ACRYGT 1 cut(s) 234
AgeI ACCGGT 1 cut(s) 47
AhdI GACNNNNNGTC 1 cut(s) 235
AjiI CACGTC 2 cut(s) 226, 237
AjnI CCWGG 1 cut(s) 184
Alw26I GTCTC 3 cut(s) 18, 149, 164
AlwNI CAGNNNCTG 2 cut(s) 202, 362
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 202
AsiGI ACCGGT 1 cut(s) 47
AspLEI GCGC 1 cut(s) 311
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 37, 115
BanI GGYRCC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 186
BciVI GTATCC 1 cut(s) 357
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 18, 149, 164
BfaI CTAG 2 cut(s) 84, 296
BfmI CTRYAG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 312
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 3 cut(s) 55, 88, 203
BlsI GCNGC 3 cut(s) 56, 89, 204
Bme1390I CCNGG 2 cut(s) 186, 343
BmeRI GACNNNNNGTC 1 cut(s) 235
BmgBI CACGTC 2 cut(s) 226, 237
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 186, 343
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 116, 188
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 168, 238
Bpu10I CCTNAGC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 149
BsaWI WCCGGW 2 cut(s) 47, 107
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 356
Bse118I RCCGGY 2 cut(s) 47, 291
Bse1I ACTGG 3 cut(s) 155, 196, 221
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 89, 356
BseMII CTCAG 2 cut(s) 159, 220
BseNI ACTGG 3 cut(s) 155, 196, 221
BseRI GAGGAG 2 cut(s) 36, 285
BseXI GCAGC 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 308
BshTI ACCGGT 1 cut(s) 47
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 6 cut(s) 34, 48, 108, 292, 312, 342
BslI CCNNNNNNNGG 2 cut(s) 89, 356
BsmAI GTCTC 3 cut(s) 18, 149, 164
BsmBI CGTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 4 cut(s) 55, 87, 90, 289
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 160, 219
BspLI GGNNCC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 57
BsrFI RCCGGY 2 cut(s) 47, 291
BsrI ACTGG 3 cut(s) 155, 196, 221
BssAI RCCGGY 2 cut(s) 47, 291
BssMI GATC 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 168, 206
BstEII GGTNACC 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 3 cut(s) 18, 149, 164
BstMBI GATC 1 cut(s) 69
BstMCI CGRYCG 1 cut(s) 52
BstNI CCWGG 1 cut(s) 186
BstPI GGTNACC 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 184, 341
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 189
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 285
BtrI CACGTC 2 cut(s) 226, 237
BtsI GCAGTG 2 cut(s) 124, 136
BtsIMutI CAGTG 2 cut(s) 124, 136
Cac8I GCNNGC 1 cut(s) 293
CaiI CAGNNNCTG 2 cut(s) 202, 362
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 2 cut(s) 47, 291
CspAI ACCGGT 1 cut(s) 47
CviJI RGCY 7 cut(s) 17, 33, 136, 285, 295, 335, 362
CviKI_1 RGCY 7 cut(s) 17, 33, 136, 285, 295, 335, 362
DdeI CTNAG 2 cut(s) 168, 206
DinI GGCGCC 1 cut(s) 310
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DriI GACNNNNNGTC 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 184
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 164
FaiI YATR 2 cut(s) 320, 324
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 55, 88, 203
Fsp4HI GCNGC 3 cut(s) 55, 88, 203
FspBI CTAG 2 cut(s) 84, 296
GlaI GCGC 1 cut(s) 310
GluI GCNGC 3 cut(s) 55, 88, 203
GsuI CTGGAG 2 cut(s) 168, 238
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 1 cut(s) 285
HapII CCGG 6 cut(s) 34, 48, 108, 292, 312, 342
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 309
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 3 cut(s) 37, 256, 300
HpaII CCGG 6 cut(s) 34, 48, 108, 292, 312, 342
HphI GGTGA 2 cut(s) 37, 115
Hpy166II GTNNAC 2 cut(s) 76, 229
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 191, 260
Hpy8I GTNNAC 2 cut(s) 76, 229
Hpy99I CGWCG 2 cut(s) 227, 241
HpyCH4IV ACGT 2 cut(s) 225, 236
HpyCH4V TGCA 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 168, 206
HpySE526I ACGT 2 cut(s) 225, 236
Hsp92I GRCGYC 1 cut(s) 309
HspAI GCGC 1 cut(s) 309
KasI GGCGCC 1 cut(s) 308
KroI GCCGGC 1 cut(s) 291
KroNI GCCGGC 1 cut(s) 293
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 62, 219
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 2 cut(s) 116, 188
MaeI CTAG 2 cut(s) 84, 296
MaeII ACGT 2 cut(s) 225, 236
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 71
MbiI CCGCTC 1 cut(s) 57
MboI GATC 1 cut(s) 69
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 325
Mly113I GGCGCC 1 cut(s) 309
MmeI TCCRAC 2 cut(s) 84, 123
MnlI CCTC 6 cut(s) 14, 91, 139, 263, 275, 325
MroNI GCCGGC 1 cut(s) 291
MseI TTAA 1 cut(s) 249
MspI CCGG 6 cut(s) 34, 48, 108, 292, 312, 342
MspR9I CCNGG 2 cut(s) 186, 343
MvaI CCWGG 1 cut(s) 186
NaeI GCCGGC 1 cut(s) 293
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 343
NdeII GATC 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 291
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 293
PfeI GAWTC 3 cut(s) 37, 256, 300
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 3 cut(s) 56, 89, 204
PluTI GGCGCC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 310
PstNI CAGNNNCTG 2 cut(s) 202, 362
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 3 cut(s) 55, 88, 203
Sau3AI GATC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 186, 343
SetI ASST 5 cut(s) 102, 190, 212, 228, 239
SfaNI GCATC 2 cut(s) 116, 188
SfcI CTRYAG 1 cut(s) 28
SfoI GGCGCC 1 cut(s) 310
Sse9I AATT 1 cut(s) 325
SsiI CCGC 4 cut(s) 55, 87, 90, 289
SspDI GGCGCC 1 cut(s) 308
SspMI CTAG 2 cut(s) 84, 296
StyD4I CCNGG 2 cut(s) 184, 341
TaiI ACGT 2 cut(s) 228, 239
TasI AATT 1 cut(s) 325
TauI GCSGC 2 cut(s) 57, 90
TfiI GAWTC 3 cut(s) 37, 256, 300
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 124, 136
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 103
TspRI CASTG 2 cut(s) 124, 136
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 2 cut(s) 84, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.