Rh6BG455700

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013778
Physical Location & Seq
Reverse (-)
66845123 .. 66845871
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG455700.1

Sequence Viewer

Length: 513 bp
ATGGGAATGGTTGATCAGGGTTCCGGTTCCGACCACATCGGAAGCAGCGTTTCCGGTCCCAATTTGGGGCTCTCCGGCGGTTCTAGTTTCAATGGGAAAATGGGTTTTGTGCCTAGCTCTTCTGGGCCGCTGAATTACAAGGTTTCAAATGTTGGGTTGATGAACAATAATGGCGGCAACAACAACAACAACTCCAATTTCTCCAATTCAGCACTTCCAGTTTCGCTGCCTCATGGAATGGTCTATCAGAATCACCAGCAGTTTGAGAACCCAGATGAAAAGCCTCAGATTCTGAACCCACATGTGTTCATGAACCAGCACCAATCTCAGCTCCCTCATCAAAATTCAAACTTTTTTCATGCCAGTGACTTCTGCTCAGCAGGAGCAGCACTTTCTTCAGTCCTAGCCCAAGCGCCACAACCCAGGTGGCGGCCGAGGTGGTGGAGGACCGGACTCATAAGAAAATATGGGATAACTTGTGGGAGAAGAAGGGTAATATGGGAACAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

170

Amino Acids

18.59

Weight (kDa)

9.69

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 78, 128, 174, 430
AcoI YGGCCR 1 cut(s) 431
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 381
AfiI CCNNNNNNNGG 3 cut(s) 65, 66, 429
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 3 cut(s) 91, 147, 348
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 2 cut(s) 117, 331
AluI AGCT 2 cut(s) 117, 331
AlwNI CAGNNNCTG 1 cut(s) 292
AoxI GGCC 2 cut(s) 125, 431
ApeKI GCWGC 3 cut(s) 45, 226, 386
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 3 cut(s) 56, 125, 447
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 56, 447
BanII GRGCYC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 57, 213, 398
BciT130I CCWGG 1 cut(s) 424
BclI TGATCA 1 cut(s) 13
BfaI CTAG 3 cut(s) 84, 114, 404
BfoI RGCGCY 1 cut(s) 416
BisI GCNGC 6 cut(s) 46, 128, 175, 227, 387, 431
BlpI GCTNAGC 1 cut(s) 376
BlsI GCNGC 6 cut(s) 47, 129, 176, 228, 388, 432
Bme1390I CCNGG 1 cut(s) 424
Bme18I GGWCC 2 cut(s) 56, 447
BmgT120I GGNCC 3 cut(s) 56, 125, 447
BmiI GGNNCC 3 cut(s) 22, 28, 58
BmrFI CCNGG 1 cut(s) 424
Bpu1102I GCTNAGC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 422, 434
BsaWI WCCGGW 3 cut(s) 23, 53, 449
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 66, 429
Bse1I ACTGG 2 cut(s) 218, 363
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 2 cut(s) 422, 434
BseLI CCNNNNNNNGG 3 cut(s) 65, 66, 429
BseMII CTCAG 3 cut(s) 299, 341, 390
BseNI ACTGG 2 cut(s) 218, 363
BseX3I CGGCCG 1 cut(s) 431
BseXI GCAGC 3 cut(s) 57, 213, 398
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 2 cut(s) 127, 433
BsiEI CGRYCG 1 cut(s) 434
BsiSI CCGG 4 cut(s) 24, 54, 75, 450
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 3 cut(s) 65, 66, 429
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 2 cut(s) 127, 433
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 13
Bsp1720I GCTNAGC 1 cut(s) 376
BspACI CCGC 4 cut(s) 78, 128, 174, 430
BspANI GGCC 2 cut(s) 127, 433
BspCNI CTCAG 3 cut(s) 298, 340, 389
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 22, 28, 58
BspQI GCTCTTC 1 cut(s) 124
BsrI ACTGG 2 cut(s) 218, 363
BssECI CCNNGG 2 cut(s) 422, 434
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 285, 327, 376
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMCI CGRYCG 1 cut(s) 434
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 422
BstV1I GCAGC 3 cut(s) 57, 213, 398
BstZI CGGCCG 1 cut(s) 431
BsuRI GGCC 2 cut(s) 127, 433
BtsIMutI CAGTG 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 292
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 3 cut(s) 56, 125, 447
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 4 cut(s) 233, 302, 310, 359
CviJI RGCY 7 cut(s) 70, 117, 127, 283, 331, 407, 433
CviKI_1 RGCY 7 cut(s) 70, 117, 127, 283, 331, 407, 433
DdeI CTNAG 3 cut(s) 285, 327, 376
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 431
EagI CGGCCG 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
EclXI CGGCCG 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 56, 447
Eco52I CGGCCG 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 4 cut(s) 236, 305, 313, 362
FaiI YATR 8 cut(s) 234, 303, 311, 360, 458, 468, 499, 511
FaqI GGGAC 1 cut(s) 42
FatI CATG 4 cut(s) 232, 301, 309, 358
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 6 cut(s) 46, 128, 175, 227, 387, 431
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 6 cut(s) 46, 128, 175, 227, 387, 431
FspBI CTAG 3 cut(s) 84, 114, 404
GlaI GCGC 1 cut(s) 414
GluI GCNGC 6 cut(s) 46, 128, 175, 227, 387, 431
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 2 cut(s) 127, 433
HapII CCGG 4 cut(s) 24, 54, 75, 450
HhaI GCGC 1 cut(s) 415
Hin1II CATG 4 cut(s) 236, 305, 313, 362
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 3 cut(s) 250, 289, 453
HpaII CCGG 4 cut(s) 24, 54, 75, 450
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 5 cut(s) 31, 41, 249, 288, 294
Hpy188III TCNNGA 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 3 cut(s) 285, 327, 376
Hsp92II CATG 4 cut(s) 236, 305, 313, 362
HspAI GCGC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 336, 383
Lsp1109I GCAGC 3 cut(s) 57, 213, 398
MaeI CTAG 3 cut(s) 84, 114, 404
MaeIII GTNAC 1 cut(s) 365
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 3 cut(s) 111, 387, 498
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 5 cut(s) 61, 133, 196, 205, 343
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 240, 294, 345, 429, 438
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 4 cut(s) 24, 54, 75, 450
MspR9I CCNGG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 13
NlaIII CATG 4 cut(s) 236, 305, 313, 362
NlaIV GGNNCC 3 cut(s) 22, 28, 58
NmeAIII GCCGAG 1 cut(s) 459
NmuCI GTSAC 1 cut(s) 365
NspI RCATGY 1 cut(s) 305
PagI TCATGA 1 cut(s) 309
PciI ACATGT 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 2 cut(s) 250, 289
PkrI GCNGC 6 cut(s) 47, 129, 176, 228, 388, 432
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
PscI ACATGT 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 3 cut(s) 22, 28, 58
PspPI GGNCC 3 cut(s) 56, 125, 447
PstNI CAGNNNCTG 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 124
SatI GCNGC 6 cut(s) 46, 128, 175, 227, 387, 431
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 3 cut(s) 56, 125, 447
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 1 cut(s) 72
SetI ASST 5 cut(s) 119, 144, 333, 428, 440
SinI GGWCC 2 cut(s) 56, 447
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 5 cut(s) 61, 133, 196, 205, 343
SsiI CCGC 4 cut(s) 78, 128, 174, 430
SspMI CTAG 3 cut(s) 84, 114, 404
StyD4I CCNGG 1 cut(s) 422
TasI AATT 5 cut(s) 61, 133, 196, 205, 343
TauI GCSGC 3 cut(s) 130, 177, 433
TfiI GAWTC 2 cut(s) 250, 289
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 3 cut(s) 45, 226, 386
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 5 cut(s) 176, 291, 298, 326, 347
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 2 cut(s) 56, 447
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XspI CTAG 3 cut(s) 84, 114, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.