Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013778

Physical Location & Seq

Genomic Coordinates Reverse (-)

22836748 .. 22853954

Gene Structure 17207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAGCGTCTCCGGGTCAAGATCAGTTGCTGCTCCGGTGGATCTCAGGCGACGTGGACAACGCGTCTAATATCTGGCTGCAAATCGGCGGCATCGAGTTCAAGAAGAAGGCTCTGGAATTTGCATTTGGAATCAAGGAGAGGGAGCCAATTGTAGTTGGAAACATTAGATGCAGCAAGGTAAGAGAAGAAACTGAAGTGTTCTGTGTACAGCAACTACTCCATAAGAAGACATTGCTTTGTTGGATGCAAAGTCCTTTCAAAAGGTTTATGCAATCTGGCCTTTACGAAAGAGCCCAGAAGCGTGAGAAGCTTCCGAGAGAGAGTGATTTCATTAAGAGGTGGGTGCGAATATTTAGATCGACTTTGGGAAGGAGTGTTTTCAGCAAAATAAGAATTGGGTTTCTTTTCTTGTCCATGGAAAACTTGATACCAGCTTGCTTAAAATACCAGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

18.04

Weight (kDa)

9.93

Isoelectric Point (pI)

62.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013778)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035838
rosa_multiflora	Rmu_sc0000698.1_g000120 Rmu_sc0002978.1_g000023 Rmu_sc0004485.1_g000010 Rmu_sc0004485.1_g000011 Rmu_sc0007021.1_g000015 Rmu_sc0028406.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017100
rosa_samantha	Rh1CG113400 Rh3BG189800 Rh3DG186300 Rh5AG288100 Rh5AG433700 Rh5CG549800 Rh6BG455700 Rh6CG459200 Rh6DG446100 Rh7CG424700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	103, 262
AhdI	GACNNNNNGTC	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	2 cut(s)	313, 437
AluI	AGCT	2 cut(s)	313, 437
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	4 cut(s)	5, 31, 79, 174
ApoI	RAATTY	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	17, 18, 66, 186
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	15
BisI	GCNGC	5 cut(s)	6, 32, 80, 91, 175
BlsI	GCNGC	5 cut(s)	7, 33, 81, 92, 176
Bme1390I	CCNGG	1 cut(s)	15
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	3 cut(s)	102, 161, 237
BpiI	GAAGAC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	17, 18, 66, 186
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	14, 37
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	22, 42, 359, 453
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	22, 42, 359, 453
BssT1I	CCWWGG	1 cut(s)	417
BstAUI	TGTACA	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	4 cut(s)	25, 45, 362, 456
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	4 cut(s)	22, 42, 359, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	4 cut(s)	17, 18, 66, 186
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	417
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	31
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	418
CviJI	RGCY	7 cut(s)	79, 113, 148, 282, 296, 313, 437
CviKI_1	RGCY	7 cut(s)	79, 113, 148, 282, 296, 313, 437
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	4 cut(s)	24, 44, 361, 455
DpnII	GATC	4 cut(s)	22, 42, 359, 453
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	421
FaiI	YATR	3 cut(s)	225, 272, 419
FatI	CATG	1 cut(s)	417
Fnu4HI	GCNGC	5 cut(s)	6, 32, 80, 91, 175
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	5 cut(s)	6, 32, 80, 91, 175
GluI	GCNGC	5 cut(s)	6, 32, 80, 91, 175
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	14, 37
HgaI	GACGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	2 cut(s)	14, 37
Hpy166II	GTNNAC	2 cut(s)	58, 209
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	4 cut(s)	20, 103, 116, 457
Hpy8I	GTNNAC	2 cut(s)	58, 209
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	103, 366
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	82, 125, 174, 250, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	22, 42, 359, 453
LmnI	GCTCC	2 cut(s)	39, 145
LpnPI	CCDG	8 cut(s)	27, 33, 50, 61, 101, 264, 311, 447
Lsp1109I	GCAGC	4 cut(s)	17, 18, 66, 186
LweI	GCATC	3 cut(s)	102, 161, 237
MaeII	ACGT	1 cut(s)	54
MalI	GATC	4 cut(s)	24, 44, 361, 455
MboI	GATC	4 cut(s)	22, 42, 359, 453
MboII	GAAGA	3 cut(s)	118, 200, 241
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	3 cut(s)	119, 150, 396
MluI	ACGCGT	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	139, 224
MnlI	CCTC	2 cut(s)	135, 333
MseI	TTAA	2 cut(s)	336, 443
MspI	CCGG	2 cut(s)	14, 37
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	22, 42, 359, 453
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	5 cut(s)	7, 33, 81, 92, 176
PspN4I	GGNNCC	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	336, 443
SatI	GCNGC	5 cut(s)	6, 32, 80, 91, 175
Sau3AI	GATC	4 cut(s)	22, 42, 359, 453
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	6 cut(s)	57, 183, 269, 315, 344, 439
SfaNI	GCATC	3 cut(s)	102, 161, 237
Sse9I	AATT	3 cut(s)	119, 150, 396
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	417
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	96, 362
TasI	AATT	3 cut(s)	119, 150, 396
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	336, 443
Tru9I	TTAA	2 cut(s)	336, 443
TseI	GCWGC	4 cut(s)	5, 31, 79, 174
TspDTI	ATGAA	1 cut(s)	322
XapI	RAATTY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.