Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013778

Physical Location & Seq

Genomic Coordinates Reverse (-)

76632637 .. 76632897

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG549800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCCGCTTCTGCAGGACACTTCGTCGGTGGGACCAGAGCCCGACACGGAGGTGGCGCGCAGCAGCAGCAAGGATGAGTGGACCTGTGAGCTTCAGTCGATTCCTAGAGGCGGTCTGGAGGCCATGACAGGATCGGGCGGAGGGAGATGCGGTGGGCTTGGATTGGAGGACTTGGAGACCATGCTGTCCGAAACGGCGGCGTCTTCTGGTCAAGACCAGTCGCTGCTCCGGTGGATCTCAGGCGACCTAGACGACGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

86

Amino Acids

8.96

Weight (kDa)

4.05

Isoelectric Point (pI)

64.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013778)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035838
rosa_multiflora	Rmu_sc0000698.1_g000120 Rmu_sc0002978.1_g000023 Rmu_sc0004485.1_g000010 Rmu_sc0004485.1_g000011 Rmu_sc0007021.1_g000015 Rmu_sc0028406.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017100
rosa_samantha	Rh1CG113400 Rh3BG189800 Rh3DG186300 Rh5AG288100 Rh5AG433700 Rh5CG549800 Rh6BG455700 Rh6CG459200 Rh6DG446100 Rh7CG424700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	184
AccII	CGCG	2 cut(s)	58, 257
AciI	CCGC	5 cut(s)	5, 111, 138, 150, 197
AclWI	GGATC	2 cut(s)	139, 242
AcuI	CTGAAG	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	255
AhdI	GACNNNNNGTC	1 cut(s)	22
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	139, 242
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	60, 63, 66, 223
AspLEI	GCGC	2 cut(s)	58, 60
AspS9I	GGNCC	2 cut(s)	32, 81
AvaII	GGWCC	2 cut(s)	32, 81
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	72, 75, 78, 210
BceAI	ACGGC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	105, 248
BfmI	CTRYAG	1 cut(s)	11
BisI	GCNGC	6 cut(s)	5, 61, 64, 67, 198, 224
BlsI	GCNGC	6 cut(s)	6, 62, 65, 68, 199, 225
Bme18I	GGWCC	2 cut(s)	32, 81
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	32, 81
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	217
BsePI	GCGCGC	1 cut(s)	56
BseXI	GCAGC	4 cut(s)	72, 75, 78, 210
Bsh1236I	CGCG	2 cut(s)	58, 257
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	131, 234
BspACI	CCGC	5 cut(s)	5, 111, 138, 150, 197
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	251
BspFNI	CGCG	2 cut(s)	58, 257
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	2 cut(s)	139, 242
BspTNI	GGTCTC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	217
BssHII	GCGCGC	1 cut(s)	56
BssMI	GATC	2 cut(s)	131, 234
BssNI	GRCGYC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	2 cut(s)	58, 257
BstHHI	GCGC	2 cut(s)	58, 60
BstKTI	GATC	2 cut(s)	134, 237
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	131, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 66
BstSFI	CTRYAG	1 cut(s)	11
BstUI	CGCG	2 cut(s)	58, 257
BstV1I	GCAGC	4 cut(s)	72, 75, 78, 210
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	2 cut(s)	58, 60
Cfr13I	GGNCC	2 cut(s)	32, 81
CseI	GACGC	1 cut(s)	189
CviAII	CATG	2 cut(s)	124, 181
CviJI	RGCY	4 cut(s)	40, 91, 122, 157
CviKI_1	RGCY	4 cut(s)	40, 91, 122, 157
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	2 cut(s)	133, 236
DpnII	GATC	2 cut(s)	131, 234
DrdI	GACNNNNNNGTC	1 cut(s)	184
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	184
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	32, 81
Eco57I	CTGAAG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	2 cut(s)	127, 184
FaiI	YATR	2 cut(s)	125, 182
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	2 cut(s)	123, 180
Fnu4HI	GCNGC	6 cut(s)	5, 61, 64, 67, 198, 224
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	5, 61, 64, 67, 198, 224
FspBI	CTAG	2 cut(s)	105, 248
GlaI	GCGC	2 cut(s)	57, 59
GluI	GCNGC	6 cut(s)	5, 61, 64, 67, 198, 224
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	58, 60
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	127, 184
Hin6I	GCGC	2 cut(s)	56, 58
HinP1I	GCGC	2 cut(s)	56, 58
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	116, 212
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	2 cut(s)	28, 257
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 66
HpyF3I	CTNAG	1 cut(s)	238
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	127, 184
HspAI	GCGC	2 cut(s)	56, 58
Kzo9I	GATC	2 cut(s)	131, 234
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	8 cut(s)	48, 97, 101, 114, 192, 225, 230, 242
Lsp1109I	GCAGC	4 cut(s)	72, 75, 78, 210
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	105, 248
MalI	GATC	2 cut(s)	133, 236
MboI	GATC	2 cut(s)	131, 234
MboII	GAAGA	1 cut(s)	195
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	42
MluI	ACGCGT	1 cut(s)	255
MnlI	CCTC	5 cut(s)	43, 101, 112, 134, 160
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	58, 257
MwoI	GCNNNNNNNGC	2 cut(s)	10, 66
NdeII	GATC	2 cut(s)	131, 234
NlaIII	CATG	2 cut(s)	127, 184
NlaIV	GGNNCC	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	50
PauI	GCGCGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	6 cut(s)	6, 62, 65, 68, 199, 225
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	32, 81
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	234
PteI	GCGCGC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	50
SatI	GCNGC	6 cut(s)	5, 61, 64, 67, 198, 224
Sau3AI	GATC	2 cut(s)	131, 234
Sau96I	GGNCC	2 cut(s)	32, 81
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	54, 86, 93, 249
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	11
SinI	GGWCC	2 cut(s)	32, 81
SmiMI	CAYNNNNRTG	1 cut(s)	50
SsiI	CCGC	5 cut(s)	5, 111, 138, 150, 197
SspMI	CTAG	2 cut(s)	105, 248
TaqI	TCGA	1 cut(s)	98
TauI	GCSGC	2 cut(s)	7, 200
TfiI	GAWTC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	60, 63, 66, 223
TspGWI	ACGGA	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	32, 81
XspI	CTAG	2 cut(s)	105, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.