Rmu_sc0007021.1_g000015

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007021.1
OG0013778
Physical Location & Seq
Reverse (-)
48169 .. 48633
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007021.1_g000015.1.cds

Sequence Viewer

Length: 465 bp
atgattttcatgatcgcgaattcagaaaccaatttagagattaagagggaaagacctggtggtaatcttcggaaggaacaaccaaggcgtcaagaggaggagagtgagacgccattagagacctctgttcttcatatgagaagaagtccgagcccaccaactctctcctcctccttcaacggcggcggcaatgacaacaccaccacgccgcttctgcaggacacttcgtcggtgggaccagagcccgacacggaggtggcgcgcagcagcagcaaggatgagtggacctgtgagcttcagtcgattcctagaggcggtctggaggccgtgacaggatcgggcggcggaagatgcggcgggcttggattggaggacttggagaccatgctatccgaaacggcggcgtcttctagtcaagaccagtcgctgctccggtggatctcagacgacctagacgacgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

154

Amino Acids

16.62

Weight (kDa)

4.41

Isoelectric Point (pI)

76.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 17, 262, 461
AciI CCGC 9 cut(s) 183, 186, 209, 315, 342, 345, 354, 357, 401
AclWI GGATC 2 cut(s) 343, 446
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 3 cut(s) 88, 110, 404
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 1 cut(s) 178
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 101, 113, 374
AlwI GGATC 2 cut(s) 343, 446
AlwNI CAGNNNCTG 1 cut(s) 427
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 4 cut(s) 264, 267, 270, 427
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 2 cut(s) 262, 264
AspS9I GGNCC 2 cut(s) 236, 285
AvaII GGWCC 2 cut(s) 236, 285
BanII GRGCYC 2 cut(s) 155, 246
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 4 cut(s) 276, 279, 282, 414
BceAI ACGGC 3 cut(s) 196, 311, 414
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 3 cut(s) 101, 113, 374
BfaI CTAG 3 cut(s) 309, 411, 452
BfmI CTRYAG 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 2 cut(s) 236, 285
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 236, 285
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 341
BsaHI GRCGYC 3 cut(s) 88, 110, 404
BsaI GGTCTC 2 cut(s) 113, 374
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 421
BsePI GCGCGC 1 cut(s) 260
BseRI GAGGAG 4 cut(s) 110, 113, 157, 160
BseXI GCAGC 4 cut(s) 276, 279, 282, 414
Bsh1236I CGCG 3 cut(s) 17, 262, 461
BshFI GGCC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 433
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 3 cut(s) 101, 113, 374
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 1 cut(s) 326
Bso31I GGTCTC 2 cut(s) 113, 374
Bsp1286I GDGCHC 2 cut(s) 155, 246
Bsp143I GATC 3 cut(s) 12, 335, 438
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 9 cut(s) 183, 186, 209, 315, 342, 345, 354, 357, 401
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 455
BspFNI CGCG 3 cut(s) 17, 262, 461
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 219
BspPI GGATC 2 cut(s) 343, 446
BspTNI GGTCTC 2 cut(s) 113, 374
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 83
BssHII GCGCGC 1 cut(s) 260
BssMI GATC 3 cut(s) 12, 335, 438
BssNI GRCGYC 3 cut(s) 88, 110, 404
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 57
BstACI GRCGYC 3 cut(s) 88, 110, 404
BstC8I GCNNGC 2 cut(s) 262, 359
BstDEI CTNAG 1 cut(s) 442
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 3 cut(s) 17, 262, 461
BstHHI GCGC 2 cut(s) 262, 264
BstKTI GATC 3 cut(s) 15, 338, 441
BstMAI GTCTC 3 cut(s) 101, 113, 374
BstMBI GATC 3 cut(s) 12, 335, 438
BstMWI GCNNNNNNNGC 3 cut(s) 214, 270, 351
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 215
BstUI CGCG 3 cut(s) 17, 262, 461
BstV1I GCAGC 4 cut(s) 276, 279, 282, 414
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 283
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 262, 359
CaiI CAGNNNCTG 1 cut(s) 427
CciI TCATGA 1 cut(s) 9
CfoI GCGC 2 cut(s) 262, 264
Cfr13I GGNCC 2 cut(s) 236, 285
CseI GACGC 3 cut(s) 77, 118, 393
CsiI ACCWGGT 1 cut(s) 55
CviAII CATG 2 cut(s) 10, 385
CviJI RGCY 5 cut(s) 153, 244, 295, 326, 361
CviKI_1 RGCY 5 cut(s) 153, 244, 295, 326, 361
DdeI CTNAG 1 cut(s) 442
DpnI GATC 3 cut(s) 14, 337, 440
DpnII GATC 3 cut(s) 12, 335, 438
DriI GACNNNNNGTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 83
Eco24I GRGCYC 2 cut(s) 155, 246
Eco31I GGTCTC 2 cut(s) 113, 374
Eco47I GGWCC 2 cut(s) 236, 285
Eco57I CTGAAG 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 83
EcoT38I GRGCYC 2 cut(s) 155, 246
ErhI CCWWGG 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 2 cut(s) 13, 388
FaiI YATR 4 cut(s) 11, 135, 137, 386
FaqI GGGAC 1 cut(s) 249
FatI CATG 2 cut(s) 9, 384
FauI CCCGC 1 cut(s) 350
FauNDI CATATG 1 cut(s) 135
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 2 cut(s) 155, 246
FspBI CTAG 3 cut(s) 309, 411, 452
GlaI GCGC 2 cut(s) 261, 263
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 326
HapII CCGG 1 cut(s) 433
HgaI GACGC 3 cut(s) 77, 118, 393
HhaI GCGC 2 cut(s) 262, 264
Hin1I GRCGYC 3 cut(s) 88, 110, 404
Hin1II CATG 2 cut(s) 13, 388
Hin6I GCGC 2 cut(s) 260, 262
HinP1I GCGC 2 cut(s) 260, 262
HinfI GANTC 1 cut(s) 304
HpaII CCGG 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 5 cut(s) 25, 72, 150, 394, 445
Hpy188III TCNNGA 5 cut(s) 10, 16, 92, 320, 416
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 2 cut(s) 232, 461
HpyAV CCTTC 2 cut(s) 67, 184
HpyCH4V TGCA 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 270, 351
HpyF3I CTNAG 1 cut(s) 442
Hsp92I GRCGYC 3 cut(s) 88, 110, 404
Hsp92II CATG 2 cut(s) 13, 388
HspAI GCGC 2 cut(s) 260, 262
Kzo9I GATC 3 cut(s) 12, 335, 438
LmnI GCTCC 1 cut(s) 435
LpnPI CCDG 9 cut(s) 42, 69, 203, 252, 301, 305, 318, 434, 446
Lsp1109I GCAGC 4 cut(s) 276, 279, 282, 414
LweI GCATC 1 cut(s) 341
MabI ACCWGGT 1 cut(s) 55
MaeI CTAG 3 cut(s) 309, 411, 452
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 14, 337, 440
MboI GATC 3 cut(s) 12, 335, 438
MboII GAAGA 5 cut(s) 59, 122, 153, 360, 399
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 2 cut(s) 155, 246
MluCI AATT 2 cut(s) 19, 31
MluI ACGCGT 1 cut(s) 459
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 3 cut(s) 17, 262, 461
MwoI GCNNNNNNNGC 3 cut(s) 214, 270, 351
NdeI CATATG 1 cut(s) 135
NdeII GATC 3 cut(s) 12, 335, 438
NlaIII CATG 2 cut(s) 13, 388
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 328
NruI TCGCGA 1 cut(s) 17
OliI CACNNNNGTG 1 cut(s) 254
PagI TCATGA 1 cut(s) 9
PauI GCGCGC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PfeI GAWTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 236, 285
PstI CTGCAG 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 438
PteI GCGCGC 1 cut(s) 260
RruI TCGCGA 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 3 cut(s) 12, 335, 438
Sau96I GGNCC 2 cut(s) 236, 285
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 155, 246
SetI ASST 6 cut(s) 58, 125, 258, 290, 297, 453
SexAI ACCWGGT 1 cut(s) 55
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 215
SinI GGWCC 2 cut(s) 236, 285
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 2 cut(s) 19, 31
SsiI CCGC 9 cut(s) 183, 186, 209, 315, 342, 345, 354, 357, 401
SspMI CTAG 3 cut(s) 309, 411, 452
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 1 cut(s) 83
TaqI TCGA 1 cut(s) 302
TasI AATT 2 cut(s) 19, 31
TauI GCSGC 6 cut(s) 186, 189, 211, 345, 357, 404
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 4 cut(s) 264, 267, 270, 427
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 236, 285
XapI RAATTY 1 cut(s) 19
XspI CTAG 3 cut(s) 309, 411, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.