Rmu_sc0000746.1_g000001

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000746.1
OG0001655
Physical Location & Seq
Forward (+)
53 .. 1685
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 822 bp
atgtggggaagggcattgggtattatgtttgctttgccattctcatattttcttcgtaaggggtacattaccttacaacttggactgagactttctactcttcttgcccttggtgctgggcagggtctaattggttggtggatggttaaaagtggtttagaggagccagcatctgagtatgctcagccaagagtaagcccttaccgattagcagctcaccttacttcagcctttgctatatactgtggccttttgtggactggtctttctgttgtcatgcctgaaccacctgctgaatctgtagcctgggttcatggtgctgcaaaagtgaagagacttgctcttcctgtaagtttactggttgggattactgctatctcaggagcatttgttgccgggaatgatgctggacatgcttataatacttttcccaagatgggcgacagatggatcccagaggatgtttttgacatgaagccactaatccggaacttctttgagaatacatctactgtgcagcttgaccaccgtatccttgcaactgcaactttattttcaattgtcgctttgtggtggtcaacaaggaagtttgacatacaccctgcagttcgatcgttgattggaactactgttggcatggctggccttcaggtcacactggggatatctacacttctgtcgtatgtgcctgttgagcttggcactgcacatcaagctggggcattgactctcttcacacttatgatccttctcaatcacattgtgaggaagccatcaccatcccttcttaaatctctacctcaagtagcaaagacaatataa

Protein Analysis

273

Amino Acids

29.7

Weight (kDa)

9.75

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 1 - 249 1.2e-73 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 486
AclWI GGATC 3 cut(s) 445, 458, 739
AcuI CTGAAG 2 cut(s) 210, 632
AdeI CACNNNGTG 1 cut(s) 763
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 1 cut(s) 558
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 4 cut(s) 215, 520, 697, 716
AluI AGCT 4 cut(s) 215, 520, 697, 716
Alw26I GTCTC 2 cut(s) 82, 328
AlwI GGATC 3 cut(s) 445, 458, 739
AlwNI CAGNNNCTG 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 486
AoxI GGCC 2 cut(s) 247, 643
ApeKI GCWGC 3 cut(s) 212, 320, 517
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 209, 768
BaeI ACNNNNGTAYC 2 cut(s) 514, 547
BamHI GGATCC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 224, 307, 529
BccI CCATC 5 cut(s) 136, 430, 441, 781, 787
BcgI CGANNNNNNTGC 2 cut(s) 594, 628
BciT130I CCWGG 1 cut(s) 307
BciVI GTATCC 1 cut(s) 542
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 82, 328
BfmI CTRYAG 2 cut(s) 300, 603
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 542
BisI GCNGC 3 cut(s) 213, 321, 518
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 3 cut(s) 214, 322, 519
Bme1390I CCNGG 2 cut(s) 307, 397
BmiI GGNNCC 2 cut(s) 165, 452
BmrFI CCNGG 2 cut(s) 307, 397
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 2 cut(s) 179, 394
BmuI ACTGGG 1 cut(s) 668
BplI GAGNNNNNCTC 2 cut(s) 325, 357
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 786
BpuMI CCSGG 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 109, 306
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 265, 363, 663
BseAI TCCGGA 1 cut(s) 486
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 109, 306
BseGI GGATG 3 cut(s) 147, 466, 779
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMII CTCAG 4 cut(s) 77, 165, 197, 393
BseNI ACTGG 3 cut(s) 265, 363, 663
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 224, 307, 529
BseYI CCCAGC 2 cut(s) 116, 716
BsgI GTGCAG 2 cut(s) 536, 690
Bsh1285I CGRYCG 1 cut(s) 614
BshFI GGCC 2 cut(s) 249, 645
BsiEI CGRYCG 1 cut(s) 614
BsiSI CCGG 2 cut(s) 396, 487
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 2 cut(s) 82, 328
BsnI GGCC 2 cut(s) 249, 645
Bsp13I TCCGGA 1 cut(s) 486
Bsp143I GATC 3 cut(s) 450, 611, 744
Bsp1720I GCTNAGC 1 cut(s) 183
BspANI GGCC 2 cut(s) 249, 645
BspCNI CTCAG 4 cut(s) 78, 166, 196, 392
BspEI TCCGGA 1 cut(s) 486
BspLI GGNNCC 2 cut(s) 165, 452
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 3 cut(s) 445, 458, 739
BspQI GCTCTTC 1 cut(s) 348
BsrI ACTGG 3 cut(s) 265, 363, 663
BssECI CCNNGG 2 cut(s) 109, 306
BssMI GATC 3 cut(s) 450, 611, 744
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 4 cut(s) 245, 514, 530, 631
Bst6I CTCTTC 4 cut(s) 105, 326, 348, 737
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 168, 643
BstDEI CTNAG 4 cut(s) 86, 174, 183, 379
BstF5I GGATG 3 cut(s) 147, 466, 779
BstKTI GATC 3 cut(s) 453, 614, 747
BstMAI GTCTC 2 cut(s) 82, 328
BstMBI GATC 3 cut(s) 450, 611, 744
BstMCI CGRYCG 1 cut(s) 614
BstMWI GCNNNNNNNGC 6 cut(s) 113, 392, 413, 642, 694, 713
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 2 cut(s) 305, 395
BstSFI CTRYAG 2 cut(s) 300, 603
BstV1I GCAGC 3 cut(s) 224, 307, 529
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 2 cut(s) 249, 645
BtsCI GGATG 3 cut(s) 147, 466, 779
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 2 cut(s) 656, 702
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 168, 643
CaiI CAGNNNCTG 1 cut(s) 173
Csp6I GTAC 1 cut(s) 64
CviAII CATG 5 cut(s) 277, 314, 413, 472, 637
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 4 cut(s) 86, 174, 183, 379
DpnI GATC 3 cut(s) 452, 613, 746
DpnII GATC 3 cut(s) 450, 611, 744
DraIII CACNNNGTG 1 cut(s) 763
Eam1104I CTCTTC 4 cut(s) 105, 326, 348, 737
EarI CTCTTC 4 cut(s) 105, 326, 348, 737
Eco130I CCWWGG 1 cut(s) 109
Eco32I GATATC 1 cut(s) 666
Eco57I CTGAAG 2 cut(s) 210, 632
EcoRII CCWGG 1 cut(s) 305
EcoRV GATATC 1 cut(s) 666
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 5 cut(s) 280, 317, 416, 475, 640
FatI CATG 5 cut(s) 276, 313, 412, 471, 636
Fnu4HI GCNGC 3 cut(s) 213, 321, 518
FokI GGATG 3 cut(s) 154, 473, 766
Fsp4HI GCNGC 3 cut(s) 213, 321, 518
GluI GCNGC 3 cut(s) 213, 321, 518
GsaI CCCAGC 2 cut(s) 120, 720
HaeIII GGCC 2 cut(s) 249, 645
HapII CCGG 2 cut(s) 396, 487
Hin1II CATG 5 cut(s) 280, 317, 416, 475, 640
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HinfI GANTC 2 cut(s) 296, 727
HpaII CCGG 2 cut(s) 396, 487
HphI GGTGA 2 cut(s) 209, 768
Hpy166II GTNNAC 3 cut(s) 258, 356, 579
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 381, 487
Hpy8I GTNNAC 3 cut(s) 258, 356, 579
HpyAV CCTTC 4 cut(s) 3, 656, 758, 794
HpyCH4III ACNGT 4 cut(s) 245, 514, 530, 631
HpyCH4V TGCA 6 cut(s) 323, 517, 539, 545, 605, 707
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 392, 413, 642, 694, 713
HpyF3I CTNAG 4 cut(s) 86, 174, 183, 379
Hsp92II CATG 5 cut(s) 280, 317, 416, 475, 640
Kpn2I TCCGGA 1 cut(s) 486
Kzo9I GATC 3 cut(s) 450, 611, 744
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 163, 383
Lsp1109I GCAGC 3 cut(s) 224, 307, 529
LweI GCATC 2 cut(s) 179, 394
MaeIII GTNAC 1 cut(s) 652
MalI GATC 3 cut(s) 452, 613, 746
MboI GATC 3 cut(s) 450, 611, 744
MboII GAAGA 5 cut(s) 44, 92, 335, 343, 724
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 1 cut(s) 450
MluCI AATT 2 cut(s) 129, 558
MlyI GAGTC 1 cut(s) 721
MnlI CCTC 4 cut(s) 154, 451, 759, 810
MroI TCCGGA 1 cut(s) 486
MseI TTAA 2 cut(s) 147, 789
MslI CAYNNNNRTG 1 cut(s) 740
MspI CCGG 2 cut(s) 396, 487
MspR9I CCNGG 2 cut(s) 307, 397
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 6 cut(s) 113, 392, 413, 642, 694, 713
NciI CCSGG 1 cut(s) 397
NdeII GATC 3 cut(s) 450, 611, 744
NlaIII CATG 5 cut(s) 280, 317, 416, 475, 640
NlaIV GGNNCC 2 cut(s) 165, 452
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 1 cut(s) 416
PaqCI CACCTGC 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 214, 322, 519
Ple19I CGATCG 1 cut(s) 614
PleI GAGTC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 721
PsiI TTATAA 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 2 cut(s) 116, 716
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 165, 452
PsrI GAACNNNNNNTAC 2 cut(s) 294, 326
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 450
PvuI CGATCG 1 cut(s) 614
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 740
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 147, 789
SatI GCNGC 3 cut(s) 213, 321, 518
Sau3AI GATC 3 cut(s) 450, 611, 744
SchI GAGTC 1 cut(s) 721
ScrFI CCNGG 2 cut(s) 307, 397
SetI ASST 9 cut(s) 74, 217, 222, 292, 522, 654, 699, 718, 802
SfaNI GCATC 2 cut(s) 179, 394
SfcI CTRYAG 2 cut(s) 300, 603
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 1 cut(s) 801
SmoI CTYRAG 1 cut(s) 801
Sse9I AATT 2 cut(s) 129, 558
StyD4I CCNGG 2 cut(s) 305, 395
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 4 cut(s) 245, 514, 530, 631
TaqI TCGA 1 cut(s) 610
TasI AATT 2 cut(s) 129, 558
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 147, 789
Tru9I TTAA 2 cut(s) 147, 789
TscAI CASTG 2 cut(s) 663, 709
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 3 cut(s) 212, 320, 517
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 2 cut(s) 302, 488
TspRI CASTG 2 cut(s) 663, 709
XceI RCATGY 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.