Rmu_sc0000762.1_g000013

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000762.1
OG0015558
Physical Location & Seq
Reverse (-)
65877 .. 66452
576 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
atgatcagtgtagtgccagctccaaaacccaaggatcaattcggccggaaacagccggaaagtgaagataggaccaggttatccggcgcggcaccgacggttaatattcttctcttcgattctctcaattcaaggccctatagctctagatacttccatggatccaaagaggaggagaagggggtgctttctgtgagaaaggcattgtcgatacaggcacatccggataaggacttggccaaggttttgcacaagtttatgccgagtgcttacaaggacgacaatcacaagcctgagatggcacttgctataacacattttcaggctctttgtggctcactcttgaggtatcctcatcctgtcactttcacattcgtaagatatgaacaattgacaccctttgtttttctcagcaaagatattattgctagccgaattgcttgtttcctgatgatccggtccttttcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

156

Amino Acids

17.71

Weight (kDa)

9.54

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 62 - 112 7.5e-20 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 1 cut(s) 89
AclWI GGATC 4 cut(s) 42, 156, 169, 448
AcoI YGGCCR 2 cut(s) 43, 237
AgsI TTSAA 1 cut(s) 132
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 20, 144
AluI AGCT 2 cut(s) 20, 144
AlwI GGATC 4 cut(s) 42, 156, 169, 448
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 43, 134, 237
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 72, 135, 459
AsuNHI GCTAGC 1 cut(s) 428
AvaII GGWCC 2 cut(s) 72, 459
BalI TGGCCA 1 cut(s) 239
BamHI GGATCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 91
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 147, 429
BfmI CTRYAG 1 cut(s) 139
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 72, 459
BmgT120I GGNCC 3 cut(s) 72, 135, 459
BmiI GGNNCC 2 cut(s) 93, 163
BmrFI CCNGG 1 cut(s) 76
BmtI GCTAGC 1 cut(s) 432
BplI GAGNNNNNCTC 2 cut(s) 337, 369
BpuEI CTTGAG 1 cut(s) 364
BsaJI CCNNGG 3 cut(s) 30, 157, 240
BsaWI WCCGGW 2 cut(s) 223, 456
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 3 cut(s) 30, 157, 240
BseGI GGATG 2 cut(s) 220, 355
BseMII CTCAG 2 cut(s) 285, 424
BseRI GAGGAG 2 cut(s) 185, 188
BseX3I CGGCCG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 3 cut(s) 45, 136, 239
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 5 cut(s) 46, 56, 84, 224, 457
BsnI GGCC 3 cut(s) 45, 136, 239
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 4 cut(s) 3, 34, 161, 453
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 1 cut(s) 89
BspANI GGCC 3 cut(s) 45, 136, 239
BspCNI CTCAG 2 cut(s) 286, 423
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 93, 163
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 4 cut(s) 42, 156, 169, 448
BspT107I GGYRCC 1 cut(s) 91
BssECI CCNNGG 3 cut(s) 30, 157, 240
BssMI GATC 4 cut(s) 3, 34, 161, 453
BssT1I CCWWGG 3 cut(s) 30, 157, 240
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 18, 430
BstDEI CTNAG 2 cut(s) 294, 410
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 220, 355
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 4 cut(s) 6, 37, 164, 456
BstMBI GATC 4 cut(s) 3, 34, 161, 453
BstMCI CGRYCG 1 cut(s) 46
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 139
BstUI CGCG 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BstZI CGGCCG 1 cut(s) 43
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 3 cut(s) 45, 136, 239
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 220, 355
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 18, 430
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 3 cut(s) 72, 135, 459
CsiI ACCWGGT 1 cut(s) 74
CviAII CATG 1 cut(s) 158
DdeI CTNAG 2 cut(s) 294, 410
DpnI GATC 4 cut(s) 5, 36, 163, 455
DpnII GATC 4 cut(s) 3, 34, 161, 453
EaeI YGGCCR 2 cut(s) 43, 237
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 30, 157, 240
Eco47I GGWCC 2 cut(s) 72, 459
Eco52I CGGCCG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 3 cut(s) 30, 157, 240
ErhI CCWWGG 3 cut(s) 30, 157, 240
FaeI CATG 1 cut(s) 161
FaiI YATR 5 cut(s) 141, 159, 260, 311, 384
FatI CATG 1 cut(s) 157
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 207, 342
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 2 cut(s) 147, 429
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 3 cut(s) 45, 136, 239
HapII CCGG 5 cut(s) 46, 56, 84, 224, 457
HhaI GCGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 119
HpaII CCGG 5 cut(s) 46, 56, 84, 224, 457
Hpy188III TCNNGA 5 cut(s) 147, 224, 343, 448, 468
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 250
HpyF3I CTNAG 2 cut(s) 294, 410
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 1 cut(s) 87
Kpn2I TCCGGA 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 34, 161, 453
LmnI GCTCC 1 cut(s) 25
MabI ACCWGGT 1 cut(s) 74
MaeI CTAG 2 cut(s) 147, 429
MaeIII GTNAC 1 cut(s) 361
MalI GATC 4 cut(s) 5, 36, 163, 455
MboI GATC 4 cut(s) 3, 34, 161, 453
MboII GAAGA 3 cut(s) 77, 101, 106
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 1 cut(s) 161
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 4 cut(s) 38, 127, 389, 435
MluNI TGGCCA 1 cut(s) 239
MnlI CCTC 4 cut(s) 163, 166, 339, 363
Mox20I TGGCCA 1 cut(s) 239
MroI TCCGGA 1 cut(s) 223
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 5 cut(s) 46, 56, 84, 224, 457
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 157
NdeII GATC 4 cut(s) 3, 34, 161, 453
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 93, 163
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 93, 163
PspPI GGNCC 3 cut(s) 72, 135, 459
PsuI RGATCY 1 cut(s) 161
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 4 cut(s) 3, 34, 161, 453
Sau96I GGNCC 3 cut(s) 72, 135, 459
ScrFI CCNGG 1 cut(s) 76
SetI ASST 5 cut(s) 22, 80, 146, 246, 350
SexAI ACCWGGT 1 cut(s) 74
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 2 cut(s) 72, 459
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 38, 127, 389, 435
SsiI CCGC 1 cut(s) 89
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 147, 429
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 3 cut(s) 30, 157, 240
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 117, 209
TasI AATT 4 cut(s) 38, 127, 389, 435
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 72, 459
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 2 cut(s) 147, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.