Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000887.1

Orthogroup ID

OG0007487

Physical Location & Seq

Genomic Coordinates Forward (+)

1791 .. 2714

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgcaactaactagtgctttgtgggcatgcaagaacgttttactgcaacgtgtagggtatcagacagcaaatcaggaggactgcatgaatgatgcaaagttgctgtccttcgatgatgccagcctcgaaaccagtaccaataagctcattaccaaacttaaggaggatggaggtctttccctggatgttttggagaatgtgctgacaagtatgtctgatttagggcaaaaaactgctgacgcgatcttggatttcaagagtaagatgattgatatgaaggacgatagctataagcttgtggtgatggaatacttgagcagcagcctggagctgctggacttctttactgaattggaaaagtttctagactcggctcgtcggagccattcacatatcgaacatgcgattgaacagtgtagcagcttggggagtaaacatagaccaggaagcgaggaggccaagatgatttccaatatattgagtaacattatggcgtctaatgtcaatgaccactctggtgaaaagttggtcgaaaaagctcattgtttgcttgagaagcagaaagaaatgttttccaaatgtcgcattgaacaagagaagcttgggaaggataagaagagtaatgtttggaggaagctcttgagtcgtatattcatggttgtcaagtggctcgttctcgttgttctaggggtgatattggcctatacgccctataatataacatctgatggagatggtttgtctaatgtggttggagatttgaaaatcaaagcagcatgtttccttgatgtctctgttataacagaaatagtagattactggaatagctcccaccttgaagtatgtcaagatgattttgggctgaagaatgaagcaatgaacataatacaggaaggagctttgaaagaaagaagatttggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

307

Amino Acids

34.54

Weight (kDa)

5.38

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007487)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08240 FvH4_2g08240
rosa_chinensis	RchiOBHm_Chr6g0263091 RchiOBHm_Chr6g0263111
rosa_laevigata	RLG00000014373 RLG00000014376
rosa_multiflora	Rmu_sc0000887.1_g000001 Rmu_sc0002146.1_g000002 Rmu_sc0002146.1_g000008 Rmu_sc0002479.1_g000005 Rmu_sc0010560.1_g000002 Rmu_sc0010560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00204660 Rroxscaffold_7G00204710
rosa_rugosa	Rorug06G0003600 Rorug06G0003700
rosa_samantha	Rh6AG122600 Rh6BG116600 Rh6BG116900 Rh6CG115100 Rh6CG115300 Rh6DG103700 Rh6DG103900 Rh6DG104400
rosa_wichuraiana	Rw6G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
AasI	GACNNNNNNGTC	1 cut(s)	211
AccII	CGCG	1 cut(s)	242
AclI	AACGTT	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	884
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	1 cut(s)	136
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	6 cut(s)	256, 410, 590, 763, 839, 904
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	3 cut(s)	180, 324, 442
AjuI	GAANNNNNNNTTGG	1 cut(s)	900
AleI	CACNNNNGTG	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	796
AoxI	GGCC	2 cut(s)	456, 699
ApeKI	GCWGC	5 cut(s)	318, 321, 331, 420, 773
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
Asp700I	GAANNNNTTC	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	313, 530, 703
BbvI	GCAGC	5 cut(s)	318, 330, 333, 432, 785
BccI	CCATC	4 cut(s)	161, 298, 722, 728
BciT130I	CCWGG	3 cut(s)	182, 326, 444
BcoDI	GTCTC	1 cut(s)	796
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	3 cut(s)	12, 365, 686
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	5 cut(s)	319, 322, 332, 421, 774
BlsI	GCNGC	5 cut(s)	320, 323, 333, 422, 775
Bme1390I	CCNGG	3 cut(s)	182, 326, 444
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	3 cut(s)	182, 326, 444
BmsI	GCATC	2 cut(s)	82, 106
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	3 cut(s)	334, 572, 661
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	132, 824
Bse3DI	GCAATG	1 cut(s)	882
BseBI	CCWGG	3 cut(s)	182, 326, 444
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	172, 190
BseMI	GCAATG	1 cut(s)	882
BseNI	ACTGG	2 cut(s)	132, 824
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	5 cut(s)	318, 330, 333, 432, 785
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	458, 701
BsmAI	GTCTC	1 cut(s)	796
BsnI	GGCC	2 cut(s)	458, 701
Bsp143I	GATC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	458, 701
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	2 cut(s)	132, 824
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	494
Bst2UI	CCWGG	3 cut(s)	182, 326, 444
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	28, 121
BstF5I	GGATG	2 cut(s)	172, 190
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 556
BstNI	CCWGG	3 cut(s)	182, 326, 444
BstNSI	RCATGY	3 cut(s)	30, 404, 780
BstSCI	CCNGG	3 cut(s)	180, 324, 442
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	5 cut(s)	318, 330, 333, 432, 785
BsuRI	GGCC	2 cut(s)	458, 701
BtsCI	GGATG	2 cut(s)	172, 190
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	28, 121
CseI	GACGC	2 cut(s)	248, 483
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	5 cut(s)	27, 85, 401, 655, 777
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	884
EcoRII	CCWGG	3 cut(s)	180, 324, 442
FaeI	CATG	5 cut(s)	30, 88, 404, 658, 780
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	5 cut(s)	26, 84, 400, 654, 776
Fnu4HI	GCNGC	5 cut(s)	319, 322, 332, 421, 774
FokI	GGATG	2 cut(s)	179, 197
Fsp4HI	GCNGC	5 cut(s)	319, 322, 332, 421, 774
FspBI	CTAG	3 cut(s)	12, 365, 686
GluI	GCNGC	5 cut(s)	319, 322, 332, 421, 774
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	458, 701
HgaI	GACGC	2 cut(s)	248, 483
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	30, 88, 404, 658, 780
HindIII	AAGCTT	2 cut(s)	293, 599
HinfI	GANTC	2 cut(s)	368, 643
HphI	GGTGA	3 cut(s)	313, 530, 703
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	4 cut(s)	63, 217, 381, 727
Hpy188III	TCNNGA	5 cut(s)	74, 256, 365, 640, 848
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	4 cut(s)	118, 271, 601, 887
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	2 cut(s)	36, 49
HpyCH4V	TGCA	5 cut(s)	4, 30, 46, 84, 95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 556
HpySE526I	ACGT	2 cut(s)	36, 49
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	30, 88, 404, 658, 780
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	4 cut(s)	328, 381, 833, 896
Lsp1109I	GCAGC	5 cut(s)	318, 330, 333, 432, 785
LweI	GCATC	2 cut(s)	82, 106
MaeI	CTAG	3 cut(s)	12, 365, 686
MaeII	ACGT	2 cut(s)	36, 49
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	3 cut(s)	628, 877, 924
MluCI	AATT	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	362, 652
MmeI	TCCRAC	2 cut(s)	359, 733
MnlI	CCTC	7 cut(s)	70, 134, 157, 164, 445, 448, 624
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	516
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	3 cut(s)	182, 326, 444
MvaI	CCWGG	3 cut(s)	182, 326, 444
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	23, 556
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	5 cut(s)	30, 88, 404, 658, 780
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	350
NspI	RCATGY	3 cut(s)	30, 404, 780
OliI	CACNNNNGTG	1 cut(s)	516
PaeI	GCATGC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	360
PkrI	GCNGC	5 cut(s)	320, 323, 333, 422, 775
PleI	GAGTC	2 cut(s)	362, 651
PpsI	GAGTC	2 cut(s)	362, 651
PsiI	TTATAA	1 cut(s)	800
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	180, 324, 442
PspGI	CCWGG	3 cut(s)	180, 324, 442
PspN4I	GGNNCC	1 cut(s)	383
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	5 cut(s)	319, 322, 332, 421, 774
Sau3AI	GATC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	362, 652
ScrFI	CCNGG	3 cut(s)	182, 326, 444
SfaNI	GCATC	2 cut(s)	82, 106
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	4 cut(s)	158, 313, 551, 640
SmoI	CTYRAG	4 cut(s)	158, 313, 551, 640
SpeI	ACTAGT	1 cut(s)	11
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	1 cut(s)	350
SspMI	CTAG	3 cut(s)	12, 365, 686
StyD4I	CCNGG	3 cut(s)	180, 324, 442
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	2 cut(s)	39, 52
TaqI	TCGA	4 cut(s)	111, 126, 396, 531
TasI	AATT	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	5 cut(s)	318, 321, 331, 420, 773
TspDTI	ATGAA	5 cut(s)	101, 290, 643, 885, 893
TspRI	CASTG	1 cut(s)	419
Vha464I	CTTAAG	1 cut(s)	158
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	3 cut(s)	30, 404, 780
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	3 cut(s)	12, 365, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.