Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002479.1

Orthogroup ID

OG0007487

Physical Location & Seq

Genomic Coordinates Reverse (-)

27042 .. 28181

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002479.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgcaactaactagtgctttgtgggcaagcaagaactttttactgcaacgtgtagggtatcagacagcaaatcaggaggactgcatgaatgatgcaaagttgctgtccttcgatgatgccagcctcgaaaccagtaccaataagctcattaccaaactaaaggtggatggaggtctttccctggatgttttggagaatgtgctgacaagtatgtctgatttagggcaaaaaactgctgacgcgatcttggatttcaagagtaagatgattgatatgaaggacgatagctataagcttgtggtgatggaatacttgagcagcagcctggagctgctggacttctttactgaattggaaaagtttctagactcggctcgtcggagccattcacatatcgaacttgctattgaacagtgtagccgcttggggggtaaacatggagtaggaagggaggaggccaagatgatttccaatatattgagtaacattatggcgtctaatgtcaatgaccactctggtgaaaagttggtcgaaaaggctcattgtttgcttgagaagcagaaagaaatgttttccaaatgtcgcattgaacaagagaagcttgggaaggataagaagagtaatgtttggaggaagctcttgagtcgtatattcatggttgccaagtggctcgttctcgttgttctaggggtgaaattggcctataccgcctataatataacatctggtggagatggtttgtctaatgtggttggagatttgaaaatcaaagcagcatgtttccttgatgtctctgttataacagaaatagtagattactggaatagctcccaccttgaagtatgtcaagatgattttgggctgaagaatgaagcaatgaacataatacaggaaggagctttacattccataagagaaatgggggaaataaaagatctcatcggtaaggtactaaattccattgaatctctccttgctttaagtacaaactttgcaaatggtggaaatgtagaagtggcaatcaagaatattaagctttacctgaagaagtttttggataaaattgaggctttggaggagaaaacaggggaatgcagctctagaattttgaaagcaaggcaagctgttctcatgtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

379

Amino Acids

42.35

Weight (kDa)

5.91

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007487)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08240 FvH4_2g08240
rosa_chinensis	RchiOBHm_Chr6g0263091 RchiOBHm_Chr6g0263111
rosa_laevigata	RLG00000014373 RLG00000014376
rosa_multiflora	Rmu_sc0000887.1_g000001 Rmu_sc0002146.1_g000002 Rmu_sc0002146.1_g000008 Rmu_sc0002479.1_g000005 Rmu_sc0010560.1_g000002 Rmu_sc0010560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00204660 Rroxscaffold_7G00204710
rosa_rugosa	Rorug06G0003600 Rorug06G0003700
rosa_samantha	Rh6AG122600 Rh6BG116600 Rh6BG116900 Rh6CG115100 Rh6CG115300 Rh6DG103700 Rh6DG103900 Rh6DG104400
rosa_wichuraiana	Rw6G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
AasI	GACNNNNNNGTC	1 cut(s)	211
AccII	CGCG	1 cut(s)	242
AciI	CCGC	2 cut(s)	421, 708
AcsI	RAATTY	2 cut(s)	955, 1104
AcuI	CTGAAG	2 cut(s)	884, 1064
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	3 cut(s)	136, 951, 985
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	256, 410, 590, 763, 839, 965, 1111
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	180, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	1037, 1069
AleI	CACNNNNGTG	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	796
AoxI	GGCC	2 cut(s)	456, 699
ApeKI	GCWGC	5 cut(s)	318, 321, 331, 773, 1095
ApoI	RAATTY	2 cut(s)	955, 1104
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
Asp700I	GAANNNNTTC	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	313, 530, 703
BarI	GAAGNNNNNNTAC	2 cut(s)	885, 917
BbvI	GCAGC	5 cut(s)	318, 330, 333, 785, 1107
BccI	CCATC	3 cut(s)	161, 298, 728
BciT130I	CCWGG	2 cut(s)	182, 326
BcoDI	GTCTC	1 cut(s)	796
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	4 cut(s)	12, 365, 686, 1101
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	6 cut(s)	319, 322, 332, 421, 774, 1096
BlsI	GCNGC	6 cut(s)	320, 323, 333, 422, 775, 1097
Bme1390I	CCNGG	2 cut(s)	182, 326
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	2 cut(s)	182, 326
BmsI	GCATC	2 cut(s)	82, 106
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	3 cut(s)	334, 572, 661
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	132, 824
Bse3DI	GCAATG	1 cut(s)	882
BseBI	CCWGG	2 cut(s)	182, 326
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	172, 190
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	882
BseNI	ACTGG	2 cut(s)	132, 824
BseRI	GAGGAG	2 cut(s)	467, 1091
BseXI	GCAGC	5 cut(s)	318, 330, 333, 785, 1107
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	458, 701
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	1097
BsnI	GGCC	2 cut(s)	458, 701
Bsp143I	GATC	2 cut(s)	243, 934
BspACI	CCGC	2 cut(s)	421, 708
BspANI	GGCC	2 cut(s)	458, 701
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	2 cut(s)	132, 824
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	243, 934
BssNI	GRCGYC	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	182, 326
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	28, 121, 1122
BstF5I	GGATG	2 cut(s)	172, 190
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	2 cut(s)	246, 937
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	2 cut(s)	243, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 556, 707, 1121
BstNI	CCWGG	2 cut(s)	182, 326
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	2 cut(s)	180, 324
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	5 cut(s)	318, 330, 333, 785, 1107
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
BsuRI	GGCC	2 cut(s)	458, 701
BtsCI	GGATG	2 cut(s)	172, 190
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	3 cut(s)	28, 121, 1122
CseI	GACGC	2 cut(s)	248, 483
Csp6I	GTAC	3 cut(s)	135, 950, 984
CviAII	CATG	5 cut(s)	85, 437, 655, 777, 1132
CviQI	GTAC	3 cut(s)	135, 950, 984
DpnI	GATC	2 cut(s)	245, 936
DpnII	GATC	2 cut(s)	243, 934
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
Eco57I	CTGAAG	2 cut(s)	884, 1064
EcoRII	CCWGG	2 cut(s)	180, 324
FaeI	CATG	5 cut(s)	88, 440, 658, 780, 1135
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	5 cut(s)	84, 436, 654, 776, 1131
Fnu4HI	GCNGC	6 cut(s)	319, 322, 332, 421, 774, 1096
FokI	GGATG	2 cut(s)	179, 197
Fsp4HI	GCNGC	6 cut(s)	319, 322, 332, 421, 774, 1096
FspBI	CTAG	4 cut(s)	12, 365, 686, 1101
GluI	GCNGC	6 cut(s)	319, 322, 332, 421, 774, 1096
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	458, 701
HgaI	GACGC	2 cut(s)	248, 483
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	88, 440, 658, 780, 1135
HindIII	AAGCTT	3 cut(s)	293, 599, 1034
HinfI	GANTC	3 cut(s)	368, 643, 965
HphI	GGTGA	3 cut(s)	313, 530, 703
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	3 cut(s)	63, 217, 381
Hpy188III	TCNNGA	7 cut(s)	74, 256, 365, 640, 848, 1024, 1101
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	5 cut(s)	118, 271, 441, 601, 887
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	4, 46, 84, 95, 995, 1095
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 556, 707, 1121
HpySE526I	ACGT	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	88, 440, 658, 780, 1135
Kzo9I	GATC	2 cut(s)	243, 934
LmnI	GCTCC	4 cut(s)	328, 381, 833, 896
Lsp1109I	GCAGC	5 cut(s)	318, 330, 333, 785, 1107
LweI	GCATC	2 cut(s)	82, 106
MaeI	CTAG	4 cut(s)	12, 365, 686, 1101
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	2 cut(s)	245, 936
MboI	GATC	2 cut(s)	243, 934
MboII	GAAGA	3 cut(s)	628, 877, 1057
MflI	RGATCY	1 cut(s)	934
MluCI	AATT	5 cut(s)	350, 695, 955, 1062, 1104
MlyI	GAGTC	2 cut(s)	362, 652
MmeI	TCCRAC	2 cut(s)	359, 733
MnlI	CCTC	8 cut(s)	70, 134, 164, 445, 448, 624, 1060, 1069
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	3 cut(s)	980, 1032, 1138
MslI	CAYNNNNRTG	1 cut(s)	516
MspR9I	CCNGG	2 cut(s)	182, 326
Mva1269I	GAATGC	1 cut(s)	1097
MvaI	CCWGG	2 cut(s)	182, 326
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	23, 556, 707, 1121
NdeII	GATC	2 cut(s)	243, 934
NlaIII	CATG	5 cut(s)	88, 440, 658, 780, 1135
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	350
NspI	RCATGY	1 cut(s)	780
OliI	CACNNNNGTG	1 cut(s)	516
PctI	GAATGC	1 cut(s)	1097
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	965
PkrI	GCNGC	6 cut(s)	320, 323, 333, 422, 775, 1097
PleI	GAGTC	2 cut(s)	362, 651
PpsI	GAGTC	2 cut(s)	362, 651
PsiI	TTATAA	1 cut(s)	800
Psp6I	CCWGG	2 cut(s)	180, 324
PspGI	CCWGG	2 cut(s)	180, 324
PspN4I	GGNNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	934
RsaI	GTAC	3 cut(s)	136, 951, 985
RsaNI	GTAC	3 cut(s)	135, 950, 984
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	980, 1032, 1138
SatI	GCNGC	6 cut(s)	319, 322, 332, 421, 774, 1096
Sau3AI	GATC	2 cut(s)	243, 934
SchI	GAGTC	2 cut(s)	362, 652
ScrFI	CCNGG	2 cut(s)	182, 326
SfaNI	GCATC	2 cut(s)	82, 106
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	3 cut(s)	313, 551, 640
SmoI	CTYRAG	3 cut(s)	313, 551, 640
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	5 cut(s)	350, 695, 955, 1062, 1104
SsiI	CCGC	2 cut(s)	421, 708
SspI	AATATT	1 cut(s)	1030
SspMI	CTAG	4 cut(s)	12, 365, 686, 1101
StyD4I	CCNGG	2 cut(s)	180, 324
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	4 cut(s)	111, 126, 396, 531
TasI	AATT	5 cut(s)	350, 695, 955, 1062, 1104
TatI	WGTACW	1 cut(s)	983
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	965
Tru1I	TTAA	3 cut(s)	980, 1032, 1138
Tru9I	TTAA	3 cut(s)	980, 1032, 1138
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	5 cut(s)	318, 321, 331, 773, 1095
TspDTI	ATGAA	5 cut(s)	101, 290, 643, 885, 893
TspRI	CASTG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	955, 1104
XbaI	TCTAGA	2 cut(s)	364, 1100
XceI	RCATGY	1 cut(s)	780
XcmI	CCANNNNNNNNNTGG	2 cut(s)	160, 916
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	4 cut(s)	12, 365, 686, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.