Rh6AG122600

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007487
Physical Location & Seq
Reverse (-)
18278543 .. 18279730
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG122600.1

Sequence Viewer

Length: 1188 bp
ATGAAGGAAACGAAAACGAAAATTATTCCAACGCAACTAACTAATGCTTTGTGGGCATGCAAGAACGTAATGCAACATCTAGGGTTGATGGCAGCAAATCAGGAGGACTGCAAGAATGATGCAAAGTTGCAGTCCTTCAATGATGCCAGCCTCAAAACTTGTACCGATGAAATCGTTACCAAATTTGAGGATGGAGGTCTTTCCCTGGGTACCAATGAGATCATTACCAAATATAATGGAGGTCTTTCCTTGGATGTTTTGGACAATGTGCTGACAAGAATGTCTGATTTGGGGCAAAAAACCGCTGGCGCGATCTTGGATTTCAAGAGTAAGACCATTCCAATGGTGGACGACAGCTATAAGCTTGTGGTGAAGGAGTACTTGAGCAGCAGCTTGGAGCTGCTGGAATTCTTTACTGAACTGGAAAAGTTTCTAGATTCAGCTCGTCGGAGCCATTCACATATCGAACATGCGATTGAAGAGTGCAGCAGCTTGGGGAGTAAACATGGAGTAGGAATGGAGGAGGCCAAGATGATTTCGAATATATTGAGTGACATTATGGCGTCTAACGTCAATGACTACTCTGGTGAAAAGTTGATCGAAAAGGCTCGCTGTTTGCTTGAGAAGCAGGAAGAAATGTTTGACAAATGTCGCAATGAACAAGAGAAGCTTGGGAAGGATCAGAAGAGTATTGATCGTTGGAGGAAGCTCTTGAATTATATATCCATGGGTGCTAAGTGCCTCCTTTTCATTGTTCTGTTGTTTTATTCTGTAAAATCTATTGGAGTTGGTTCGTCTGATATAGTTGGGGATTTGAAAATCAAAGCAGCATGTTTCCTTGATGTCTCTGGTATTGTAGGAATAGACTGGAGTAGCTTCCGCCTTGAAGTATGTCAAAATGATTTTGTGCTGAAGAATGATGCAATGAACACAATAAAGGAAGGAGCTATACATACCATAAAAGAAATGGGGGATATAAAAGATCTCATCGGTAAGGTAGTAAATTCCATTGAATCTCTCCTTGCTTCAAGTACGAACGTTGCAAATGGTGGAAGTGTAGAAGTGGCAATCAAGAATATTAAGCTTGACCTGAAGAAGTATTTGGATAAAATTGAGGCTTTGGAGAAGAAAGCAGGGGAATGCAGCTCTAGTATTTCGAAAGCAAGGCAAGCTGTTCTCACGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

395

Amino Acids

43.71

Weight (kDa)

5.71

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 44 - 393 4.5e-32 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 209
AccII CGCG 1 cut(s) 311
AciI CCGC 2 cut(s) 303, 880
AclI AACGTT 1 cut(s) 1038
AclWI GGATC 1 cut(s) 687
AcsI RAATTY 3 cut(s) 182, 407, 1003
AcuI CTGAAG 2 cut(s) 932, 1112
AcyI GRCGYC 1 cut(s) 563
AfaI GTAC 4 cut(s) 163, 211, 380, 1033
AgsI TTSAA 8 cut(s) 139, 325, 479, 715, 817, 887, 1013, 1029
AjnI CCWGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 1085, 1117
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 1 cut(s) 687
AoxI GGCC 1 cut(s) 525
ApeKI GCWGC 8 cut(s) 92, 387, 390, 400, 486, 489, 827, 1143
ApoI RAATTY 3 cut(s) 182, 407, 1003
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
Asp700I GAANNNNTTC 1 cut(s) 429
Asp718I GGTACC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 382, 599
AsuII TTCGAA 2 cut(s) 539, 1157
BanI GGYRCC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 933, 965
BbvI GCAGC 8 cut(s) 104, 387, 399, 402, 498, 501, 839, 1155
BccI CCATC 2 cut(s) 82, 185
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 3 cut(s) 80, 434, 1149
BglII AGATCT 1 cut(s) 982
BisI GCNGC 8 cut(s) 93, 388, 391, 401, 487, 490, 828, 1144
BlsI GCNGC 8 cut(s) 94, 389, 392, 402, 488, 491, 829, 1145
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 211, 452
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 3 cut(s) 109, 133, 910
BoxI GACNNNNGTC 1 cut(s) 648
BpmI CTGGAG 1 cut(s) 889
Bpu14I TTCGAA 2 cut(s) 539, 1157
BpuEI CTTGAG 2 cut(s) 403, 641
BsaAI YACGTR 1 cut(s) 1182
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 4 cut(s) 204, 205, 249, 726
Bse1I ACTGG 2 cut(s) 426, 872
Bse3DI GCAATG 2 cut(s) 661, 930
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 4 cut(s) 204, 205, 249, 726
BseGI GGATG 2 cut(s) 196, 259
BseMI GCAATG 2 cut(s) 661, 930
BseNI ACTGG 2 cut(s) 426, 872
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 8 cut(s) 104, 387, 399, 402, 498, 501, 839, 1155
BsgI GTGCAG 1 cut(s) 505
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 527
BshNI GGYRCC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 850
BsmI GAATGC 1 cut(s) 1145
BsnI GGCC 1 cut(s) 527
Bsp119I TTCGAA 2 cut(s) 539, 1157
Bsp143I GATC 6 cut(s) 219, 312, 597, 679, 694, 982
Bsp19I CCATGG 1 cut(s) 726
BspACI CCGC 2 cut(s) 303, 880
BspANI GGCC 1 cut(s) 527
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 211, 452
BspPI GGATC 1 cut(s) 687
BspT104I TTCGAA 2 cut(s) 539, 1157
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 661, 930
BsrI ACTGG 2 cut(s) 426, 872
BssECI CCNNGG 4 cut(s) 204, 205, 249, 726
BssMI GATC 6 cut(s) 219, 312, 597, 679, 694, 982
BssNI GRCGYC 1 cut(s) 563
BssT1I CCWWGG 2 cut(s) 249, 726
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 474, 680
BstACI GRCGYC 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 1182
BstBI TTCGAA 2 cut(s) 539, 1157
BstC8I GCNNGC 5 cut(s) 58, 148, 307, 610, 1170
BstDEI CTNAG 1 cut(s) 735
BstDSI CCRYGG 1 cut(s) 726
BstF5I GGATG 2 cut(s) 196, 259
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 6 cut(s) 222, 315, 600, 682, 697, 985
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 6 cut(s) 219, 312, 597, 679, 694, 982
BstMWI GCNNNNNNNGC 3 cut(s) 53, 625, 1169
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 3 cut(s) 60, 473, 834
BstPAI GACNNNNGTC 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 8 cut(s) 104, 387, 399, 402, 498, 501, 839, 1155
BstX2I RGATCY 1 cut(s) 982
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 1 cut(s) 982
BsuRI GGCC 1 cut(s) 527
BtgI CCRYGG 1 cut(s) 726
BtsCI GGATG 2 cut(s) 196, 259
Cac8I GCNNGC 5 cut(s) 58, 148, 307, 610, 1170
CfoI GCGC 1 cut(s) 311
CseI GACGC 1 cut(s) 552
Csp6I GTAC 4 cut(s) 162, 210, 379, 1032
CviAII CATG 5 cut(s) 57, 470, 506, 727, 831
CviQI GTAC 4 cut(s) 162, 210, 379, 1032
DdeI CTNAG 1 cut(s) 735
DpnI GATC 6 cut(s) 221, 314, 599, 681, 696, 984
DpnII GATC 6 cut(s) 219, 312, 597, 679, 694, 982
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 474, 680
EarI CTCTTC 2 cut(s) 474, 680
EciI GGCGGA 1 cut(s) 869
Eco130I CCWWGG 2 cut(s) 249, 726
Eco57I CTGAAG 2 cut(s) 932, 1112
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 249, 726
ErhI CCWWGG 2 cut(s) 249, 726
FaeI CATG 5 cut(s) 60, 473, 509, 730, 834
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 654, 686
FatI CATG 5 cut(s) 56, 469, 505, 726, 830
Fnu4HI GCNGC 8 cut(s) 93, 388, 391, 401, 487, 490, 828, 1144
FokI GGATG 2 cut(s) 203, 266
Fsp4HI GCNGC 8 cut(s) 93, 388, 391, 401, 487, 490, 828, 1144
FspBI CTAG 3 cut(s) 80, 434, 1149
GlaI GCGC 1 cut(s) 310
GluI GCNGC 8 cut(s) 93, 388, 391, 401, 487, 490, 828, 1144
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 1 cut(s) 527
HgaI GACGC 1 cut(s) 552
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 5 cut(s) 60, 473, 509, 730, 834
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HindIII AAGCTT 3 cut(s) 362, 668, 1082
HinfI GANTC 2 cut(s) 437, 1013
HphI GGTGA 2 cut(s) 382, 599
Hpy166II GTNNAC 2 cut(s) 349, 503
Hpy188I TCNGA 4 cut(s) 286, 450, 684, 799
Hpy188III TCNNGA 5 cut(s) 101, 325, 434, 712, 1072
Hpy8I GTNNAC 2 cut(s) 349, 503
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 4 cut(s) 145, 367, 670, 935
HpyCH4IV ACGT 4 cut(s) 66, 570, 1038, 1181
HpyCH4V TGCA 9 cut(s) 60, 73, 111, 122, 130, 486, 923, 1043, 1143
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 625, 1169
HpyF3I CTNAG 1 cut(s) 735
HpySE526I ACGT 4 cut(s) 66, 570, 1038, 1181
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 5 cut(s) 60, 473, 509, 730, 834
HspAI GCGC 1 cut(s) 309
KpnI GGTACC 1 cut(s) 213
Kzo9I GATC 6 cut(s) 219, 312, 597, 679, 694, 982
LmnI GCTCC 3 cut(s) 397, 450, 944
Lsp1109I GCAGC 8 cut(s) 104, 387, 399, 402, 498, 501, 839, 1155
LweI GCATC 3 cut(s) 109, 133, 910
MaeI CTAG 3 cut(s) 80, 434, 1149
MaeII ACGT 4 cut(s) 66, 570, 1038, 1181
MaeIII GTNAC 2 cut(s) 175, 551
MalI GATC 6 cut(s) 221, 314, 599, 681, 696, 984
MboI GATC 6 cut(s) 219, 312, 597, 679, 694, 982
MboII GAAGA 6 cut(s) 491, 644, 697, 925, 1105, 1138
MflI RGATCY 1 cut(s) 982
MluCI AATT 6 cut(s) 21, 182, 407, 715, 1003, 1110
MmeI TCCRAC 3 cut(s) 53, 428, 680
MroXI GAANNNNTTC 1 cut(s) 429
MseI TTAA 2 cut(s) 1080, 1186
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 1145
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 53, 625, 1169
NcoI CCATGG 1 cut(s) 726
NdeII GATC 6 cut(s) 219, 312, 597, 679, 694, 982
NlaIII CATG 5 cut(s) 60, 473, 509, 730, 834
NlaIV GGNNCC 2 cut(s) 211, 452
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 3 cut(s) 60, 473, 834
NspV TTCGAA 2 cut(s) 539, 1157
PaeI GCATGC 1 cut(s) 60
PasI CCCWGGG 1 cut(s) 205
PctI GAATGC 1 cut(s) 1145
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 2 cut(s) 437, 1013
PkrI GCNGC 8 cut(s) 94, 389, 392, 402, 488, 491, 829, 1145
Ppu21I YACGTR 1 cut(s) 1182
PshAI GACNNNNGTC 1 cut(s) 648
Psp1406I AACGTT 1 cut(s) 1038
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 211, 452
PsuI RGATCY 1 cut(s) 982
RsaI GTAC 4 cut(s) 163, 211, 380, 1033
RsaNI GTAC 4 cut(s) 162, 210, 379, 1032
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 1080, 1186
SatI GCNGC 8 cut(s) 93, 388, 391, 401, 487, 490, 828, 1144
Sau3AI GATC 6 cut(s) 219, 312, 597, 679, 694, 982
ScaI AGTACT 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 206
SfaNI GCATC 3 cut(s) 109, 133, 910
SfuI TTCGAA 2 cut(s) 539, 1157
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 382, 620
SmoI CTYRAG 2 cut(s) 382, 620
SphI GCATGC 1 cut(s) 60
Sse9I AATT 6 cut(s) 21, 182, 407, 715, 1003, 1110
SsiI CCGC 2 cut(s) 303, 880
SspI AATATT 1 cut(s) 1078
SspMI CTAG 3 cut(s) 80, 434, 1149
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 249, 726
TaiI ACGT 4 cut(s) 69, 573, 1041, 1184
TaqI TCGA 4 cut(s) 465, 539, 600, 1157
TasI AATT 6 cut(s) 21, 182, 407, 715, 1003, 1110
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 2 cut(s) 437, 1013
Tru1I TTAA 2 cut(s) 1080, 1186
Tru9I TTAA 2 cut(s) 1080, 1186
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 8 cut(s) 92, 387, 390, 400, 486, 489, 827, 1143
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 5 cut(s) 17, 183, 672, 739, 941
XapI RAATTY 3 cut(s) 182, 407, 1003
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 3 cut(s) 60, 473, 834
XcmI CCANNNNNNNNNTGG 2 cut(s) 343, 964
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 3 cut(s) 80, 434, 1149
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.