Rh6DG103700

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007487
Physical Location & Seq
Reverse (-)
13077098 .. 13088870
11773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG103700.1

Sequence Viewer

Length: 1095 bp
ATGAAGGAAACGAAAGCAAAAAGTATCCCAATGCAACTAACTAGTGCTTTGTGGGCATGCAAGAACGTTTTACTGCAACGTGTAGGGTATCAGACAGCAAATCAGGAGGACTGCATGAATGATGCAAAGTTGCTGTCCTTCGATGATGCCAGCCTCGAAACCAGTACCGATGAAATCGTTACCAAACTTAAGGAGGATGGAGGTCTTTCCCTGGATGTTTTGGAGAATGTGCTGACAAGTATGTCTGATTTAGGGCAAAAAACTGCTGACGCGATCTTGGATTTCAAGAGTAAGATGATTGATATGAAGGACGATAGCTATAAGCTTGTGGTGATGGAATACTTGAGCAGCAGCCTGGAGCTGCTGGACTTCTTTACTGAATTGGAAAAGTTTCTAGACTCGGCTCGTCGGAGCCATTCACATATCGAACATGCGATTGAACAGTGTAGCAGCTTGGGGAGTAAACATAGACCAGGAAGCGAGGAGGCCAAGATGATTTCCAATATATTGAGTAACATTATGGCGTCTAATGTCAATGACCACTCTGGTGAAAAGTTGGTCGAAAAAGCTCATTGTTTGCTTGAGAAGCAGAAAGAAATGTTTTCCAAATGTCGCATTGAACAAGAGAAGCTTGGGAAGGATAAGAAGAGTAATGTTTGGAGGAAGCTCTTGAGTCGTATATTCATGGTTGTCAAGTGGCTCGTTCTCGTTGTTCTAGGGGTGATATTGGCCTATACGCCCTATAATATAACATCTGATGGAGATGCTTTACATTCCATAAGAGAATTGGGGGAAATAAAAGATCTCATCTGTAAGGTAGTAAATTCCATTGAATCTCTCCTTGCTCTAAGTACAAACTTTGCAAATGGAGGAAATGTAGAAGTGGCAATCAAGGATATTAAGCTTCACCTAAAGAAGTTTTTGGATAAATTGAGGTTTTGGAAGAGAAAACAGGGGAATGCAGCTCTAGAATTTCGAAAGCAAGGCAAGCTGTTCTCGCGTGAGTCTATCTTCTTCAAGCAAAGATTCGGTAAGATAAAGTCTTCTACTATCTCCAACAGTGGTCTGTTCTATTTCTCAAGGGGGCGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

364

Amino Acids

41.25

Weight (kDa)

8.8

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 49 - 245 4e-15 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccII CGCG 2 cut(s) 272, 1000
AclI AACGTT 1 cut(s) 66
AcsI RAATTY 2 cut(s) 823, 971
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 2 cut(s) 166, 853
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 5 cut(s) 286, 440, 620, 833, 1018
AhlI ACTAGT 1 cut(s) 41
AjnI CCWGG 3 cut(s) 210, 354, 472
AleI CACNNNNGTG 1 cut(s) 546
AoxI GGCC 2 cut(s) 486, 729
ApeKI GCWGC 5 cut(s) 348, 351, 361, 450, 962
ApoI RAATTY 2 cut(s) 823, 971
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 390
AsuHPI GGTGA 4 cut(s) 343, 560, 733, 899
AsuII TTCGAA 1 cut(s) 976
BbsI GAAGAC 1 cut(s) 1035
BbvI GCAGC 5 cut(s) 348, 360, 363, 462, 974
BccI CCATC 3 cut(s) 191, 328, 752
BciT130I CCWGG 3 cut(s) 212, 356, 474
BciVI GTATCC 1 cut(s) 35
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 4 cut(s) 42, 395, 716, 968
BfrI CTTAAG 1 cut(s) 188
BfuI GTATCC 1 cut(s) 35
BglII AGATCT 1 cut(s) 802
BisI GCNGC 5 cut(s) 349, 352, 362, 451, 963
BlsI GCNGC 5 cut(s) 350, 353, 363, 452, 964
Bme1390I CCNGG 3 cut(s) 212, 356, 474
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 3 cut(s) 212, 356, 474
BmsI GCATC 3 cut(s) 112, 136, 754
BpiI GAAGAC 1 cut(s) 1035
BpmI CTGGAG 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 976
BpuEI CTTGAG 4 cut(s) 364, 602, 691, 1063
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 3 cut(s) 212, 356, 474
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 202, 220
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 5 cut(s) 348, 360, 363, 462, 974
Bsh1236I CGCG 2 cut(s) 272, 1000
BshFI GGCC 2 cut(s) 488, 731
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 2 cut(s) 488, 731
Bsp119I TTCGAA 1 cut(s) 976
Bsp143I GATC 2 cut(s) 273, 802
BspANI GGCC 2 cut(s) 488, 731
BspFNI CGCG 2 cut(s) 272, 1000
BspLI GGNNCC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 976
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 273, 802
BssNI GRCGYC 1 cut(s) 524
Bst2UI CCWGG 3 cut(s) 212, 356, 474
Bst4CI ACNGT 2 cut(s) 444, 1061
Bst6I CTCTTC 2 cut(s) 641, 938
BstACI GRCGYC 1 cut(s) 524
BstAFI CTTAAG 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 976
BstC8I GCNNGC 3 cut(s) 58, 151, 989
BstDEI CTNAG 1 cut(s) 848
BstF5I GGATG 2 cut(s) 202, 220
BstFNI CGCG 2 cut(s) 272, 1000
BstKTI GATC 2 cut(s) 276, 805
BstMBI GATC 2 cut(s) 273, 802
BstMWI GCNNNNNNNGC 4 cut(s) 53, 586, 988, 997
BstNI CCWGG 3 cut(s) 212, 356, 474
BstNSI RCATGY 2 cut(s) 60, 434
BstSCI CCNGG 3 cut(s) 210, 354, 472
BstUI CGCG 2 cut(s) 272, 1000
BstV1I GCAGC 5 cut(s) 348, 360, 363, 462, 974
BstV2I GAAGAC 1 cut(s) 1035
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 488, 731
BtsCI GGATG 2 cut(s) 202, 220
BtsIMutI CAGTG 2 cut(s) 449, 1066
Cac8I GCNNGC 3 cut(s) 58, 151, 989
CseI GACGC 2 cut(s) 278, 513
Csp6I GTAC 2 cut(s) 165, 852
CviAII CATG 4 cut(s) 57, 115, 431, 685
CviQI GTAC 2 cut(s) 165, 852
DdeI CTNAG 1 cut(s) 848
DpnI GATC 2 cut(s) 275, 804
DpnII GATC 2 cut(s) 273, 802
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 641, 938
EarI CTCTTC 2 cut(s) 641, 938
EcoRII CCWGG 3 cut(s) 210, 354, 472
FaeI CATG 4 cut(s) 60, 118, 434, 688
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 4 cut(s) 56, 114, 430, 684
Fnu4HI GCNGC 5 cut(s) 349, 352, 362, 451, 963
FokI GGATG 2 cut(s) 209, 227
Fsp4HI GCNGC 5 cut(s) 349, 352, 362, 451, 963
FspBI CTAG 4 cut(s) 42, 395, 716, 968
GluI GCNGC 5 cut(s) 349, 352, 362, 451, 963
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 488, 731
HgaI GACGC 2 cut(s) 278, 513
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 4 cut(s) 60, 118, 434, 688
HindIII AAGCTT 3 cut(s) 323, 629, 902
HinfI GANTC 5 cut(s) 398, 673, 833, 1004, 1026
HphI GGTGA 4 cut(s) 343, 560, 733, 899
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 4 cut(s) 93, 247, 411, 757
Hpy188III TCNNGA 5 cut(s) 104, 286, 395, 670, 968
Hpy8I GTNNAC 1 cut(s) 464
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 3 cut(s) 148, 301, 631
HpyCH4III ACNGT 2 cut(s) 444, 1061
HpyCH4IV ACGT 2 cut(s) 66, 79
HpyCH4V TGCA 7 cut(s) 34, 60, 76, 114, 125, 863, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 586, 988, 997
HpyF3I CTNAG 1 cut(s) 848
HpySE526I ACGT 2 cut(s) 66, 79
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 4 cut(s) 60, 118, 434, 688
Kzo9I GATC 2 cut(s) 273, 802
LmnI GCTCC 2 cut(s) 358, 411
Lsp1109I GCAGC 5 cut(s) 348, 360, 363, 462, 974
LweI GCATC 3 cut(s) 112, 136, 754
MaeI CTAG 4 cut(s) 42, 395, 716, 968
MaeII ACGT 2 cut(s) 66, 79
MaeIII GTNAC 2 cut(s) 178, 512
MalI GATC 2 cut(s) 275, 804
MboI GATC 2 cut(s) 273, 802
MboII GAAGA 5 cut(s) 658, 955, 1003, 1006, 1035
MflI RGATCY 1 cut(s) 802
MluCI AATT 5 cut(s) 380, 785, 823, 929, 971
MlyI GAGTC 3 cut(s) 392, 682, 1013
MmeI TCCRAC 2 cut(s) 389, 1080
MnlI CCTC 9 cut(s) 100, 164, 187, 194, 475, 478, 654, 863, 927
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 189, 900
MslI CAYNNNNRTG 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 212, 356, 474
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 3 cut(s) 212, 356, 474
MvnI CGCG 2 cut(s) 272, 1000
MwoI GCNNNNNNNGC 4 cut(s) 53, 586, 988, 997
NdeII GATC 2 cut(s) 273, 802
NlaIII CATG 4 cut(s) 60, 118, 434, 688
NlaIV GGNNCC 1 cut(s) 413
NmeAIII GCCGAG 1 cut(s) 380
NspI RCATGY 2 cut(s) 60, 434
NspV TTCGAA 1 cut(s) 976
OliI CACNNNNGTG 1 cut(s) 546
PaeI GCATGC 1 cut(s) 60
PctI GAATGC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 833, 1026
PkrI GCNGC 5 cut(s) 350, 353, 363, 452, 964
PleI GAGTC 3 cut(s) 392, 681, 1012
PpsI GAGTC 3 cut(s) 392, 681, 1012
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 210, 354, 472
PspGI CCWGG 3 cut(s) 210, 354, 472
PspN4I GGNNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 802
RsaI GTAC 2 cut(s) 166, 853
RsaNI GTAC 2 cut(s) 165, 852
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 2 cut(s) 189, 900
SatI GCNGC 5 cut(s) 349, 352, 362, 451, 963
Sau3AI GATC 2 cut(s) 273, 802
SchI GAGTC 3 cut(s) 392, 682, 1013
ScrFI CCNGG 3 cut(s) 212, 356, 474
SfaNI GCATC 3 cut(s) 112, 136, 754
SfuI TTCGAA 1 cut(s) 976
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 5 cut(s) 188, 343, 581, 670, 1078
SmoI CTYRAG 5 cut(s) 188, 343, 581, 670, 1078
SpeI ACTAGT 1 cut(s) 41
SphI GCATGC 1 cut(s) 60
Sse9I AATT 5 cut(s) 380, 785, 823, 929, 971
SspMI CTAG 4 cut(s) 42, 395, 716, 968
StyD4I CCNGG 3 cut(s) 210, 354, 472
TaaI ACNGT 2 cut(s) 444, 1061
TaiI ACGT 2 cut(s) 69, 82
TaqI TCGA 5 cut(s) 141, 156, 426, 561, 976
TasI AATT 5 cut(s) 380, 785, 823, 929, 971
TatI WGTACW 1 cut(s) 851
TfiI GAWTC 2 cut(s) 833, 1026
Tru1I TTAA 2 cut(s) 189, 900
Tru9I TTAA 2 cut(s) 189, 900
TscAI CASTG 2 cut(s) 449, 1066
TseI GCWGC 5 cut(s) 348, 351, 361, 450, 962
TspDTI ATGAA 5 cut(s) 17, 131, 186, 320, 673
TspRI CASTG 2 cut(s) 449, 1066
Vha464I CTTAAG 1 cut(s) 188
XapI RAATTY 2 cut(s) 823, 971
XbaI TCTAGA 2 cut(s) 394, 967
XceI RCATGY 2 cut(s) 60, 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 4 cut(s) 42, 395, 716, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.