Rh6BG116600

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007487
Physical Location & Seq
Reverse (-)
18021198 .. 18034164
12967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG116600.1

Sequence Viewer

Length: 1092 bp
ATGAAGGAAACGAAAGCAAAAAGTATCCCAATGCAACTAACTAGTGCTTTGTGGGCATGCAAGAACGTTTTACTGCAACGTGTAGGGTATCAGACAGCAAATCAGGAGGACTGCATGAATGATGCAAAGTTGCTGTCCTTCGATGATGCCAGCCTCGAAACCAGTACCGATGAAATCGTTACCAAACTTAAGGAGGATGGAGGTCTTTCCCTGGATGTTTTGGAGAATGTGCTGACAAGTATGTCTGATTTAGGGCAAAAAACTGCTGACGCGATCTTGGATTTCAAGAGTAAGATGATTGATATGAAGGACGATAGCTATAAGCTTGTGGTGATGGAATACTTGAGCAGCAGCCTGGAGCTGCTGGACTTCTTTACTGAATTGGAAAAGTTTCTAGACTCGGCTCGTCGGAGCCATTCACATATCGAACATGCGATTGAACAGTGTAGCAGCTTGGGGAGTAAACATAGACCAGGAAGCGAGGAGGCCAAGATGATTTCCAATATATTGAGTAACATTATGGCGTCTAATGTCAATGACCACTCTGGTGAAAAGTTGGTCGAAAAAGCTCATTGTTTGCTTGAGAAGCAGAAAGAAATGTTTTCCAAATGTCGCATTGAACAAGAGAAGCTTGGGAAGGATAAGAAGAGTAATGTTTGGAGGAAGCTCTTGAGTCGTATATTCATGGTTGTCAAGTGGCTCGTTCTCGTTGTTCTAGGGGTGATATTGGCCTATACGCCCTATAATATAACATCTGATGGAGATGCTTTACATTCCATAAGAGAATTGGGGGAAATAAAAGATCTCATCTGTAAGGTAGTAAATTCCATTGAATCTCTCCTTGCTCTAAGTACAAACTTTGCAAATGGAGGAAATGTAGAAGTGGCAATCAAGGATATTAAGCTTCACCTAAAGAAGTTTTTGGATAAATTGAGGTTTTGGAAGAGAAAACAGGGGAATGCAGCTCTAGAATTTCGAAAGCAAGGCAAGCTGTTCTCGCGTGACAAAACAAATATAAATGAACATTTTAATCAGAAAAATAGAGTAGCAGCCACAGACAACAGTACAGAGACAAACAAGAAAATAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

363

Amino Acids

41.08

Weight (kDa)

8.35

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 49 - 245 4e-15 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccII CGCG 2 cut(s) 272, 1000
AclI AACGTT 1 cut(s) 66
AcsI RAATTY 2 cut(s) 823, 971
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 3 cut(s) 166, 853, 1066
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 4 cut(s) 286, 440, 620, 833
AhlI ACTAGT 1 cut(s) 41
AjnI CCWGG 3 cut(s) 210, 354, 472
AleI CACNNNNGTG 1 cut(s) 546
Alw26I GTCTC 1 cut(s) 1064
AoxI GGCC 2 cut(s) 486, 729
ApeKI GCWGC 6 cut(s) 348, 351, 361, 450, 962, 1049
ApoI RAATTY 2 cut(s) 823, 971
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 390
AsuHPI GGTGA 4 cut(s) 343, 560, 733, 899
AsuII TTCGAA 1 cut(s) 976
BbvI GCAGC 6 cut(s) 348, 360, 363, 462, 974, 1061
BccI CCATC 3 cut(s) 191, 328, 752
BciT130I CCWGG 3 cut(s) 212, 356, 474
BciVI GTATCC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 1064
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 5 cut(s) 42, 395, 716, 968, 1090
BfrI CTTAAG 1 cut(s) 188
BfuI GTATCC 1 cut(s) 35
BglII AGATCT 1 cut(s) 802
BisI GCNGC 6 cut(s) 349, 352, 362, 451, 963, 1050
BlsI GCNGC 6 cut(s) 350, 353, 363, 452, 964, 1051
Bme1390I CCNGG 3 cut(s) 212, 356, 474
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 3 cut(s) 212, 356, 474
BmsI GCATC 3 cut(s) 112, 136, 754
BpmI CTGGAG 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 976
BpuEI CTTGAG 3 cut(s) 364, 602, 691
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 3 cut(s) 212, 356, 474
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 202, 220
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 6 cut(s) 348, 360, 363, 462, 974, 1061
Bsh1236I CGCG 2 cut(s) 272, 1000
BshFI GGCC 2 cut(s) 488, 731
BsmAI GTCTC 1 cut(s) 1064
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 2 cut(s) 488, 731
Bsp119I TTCGAA 1 cut(s) 976
Bsp143I GATC 2 cut(s) 273, 802
BspANI GGCC 2 cut(s) 488, 731
BspFNI CGCG 2 cut(s) 272, 1000
BspLI GGNNCC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 976
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 273, 802
BssNI GRCGYC 1 cut(s) 524
Bst2UI CCWGG 3 cut(s) 212, 356, 474
Bst4CI ACNGT 2 cut(s) 444, 1064
Bst6I CTCTTC 2 cut(s) 641, 938
BstACI GRCGYC 1 cut(s) 524
BstAFI CTTAAG 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 976
BstC8I GCNNGC 3 cut(s) 58, 151, 989
BstDEI CTNAG 1 cut(s) 848
BstF5I GGATG 2 cut(s) 202, 220
BstFNI CGCG 2 cut(s) 272, 1000
BstKTI GATC 2 cut(s) 276, 805
BstMAI GTCTC 1 cut(s) 1064
BstMBI GATC 2 cut(s) 273, 802
BstMWI GCNNNNNNNGC 4 cut(s) 53, 586, 988, 997
BstNI CCWGG 3 cut(s) 212, 356, 474
BstNSI RCATGY 2 cut(s) 60, 434
BstSCI CCNGG 3 cut(s) 210, 354, 472
BstUI CGCG 2 cut(s) 272, 1000
BstV1I GCAGC 6 cut(s) 348, 360, 363, 462, 974, 1061
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 488, 731
BtsCI GGATG 2 cut(s) 202, 220
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 3 cut(s) 58, 151, 989
CseI GACGC 2 cut(s) 278, 513
Csp6I GTAC 3 cut(s) 165, 852, 1065
CviAII CATG 4 cut(s) 57, 115, 431, 685
CviQI GTAC 3 cut(s) 165, 852, 1065
DdeI CTNAG 1 cut(s) 848
DpnI GATC 2 cut(s) 275, 804
DpnII GATC 2 cut(s) 273, 802
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 641, 938
EarI CTCTTC 2 cut(s) 641, 938
EcoRII CCWGG 3 cut(s) 210, 354, 472
FaeI CATG 4 cut(s) 60, 118, 434, 688
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 4 cut(s) 56, 114, 430, 684
Fnu4HI GCNGC 6 cut(s) 349, 352, 362, 451, 963, 1050
FokI GGATG 2 cut(s) 209, 227
Fsp4HI GCNGC 6 cut(s) 349, 352, 362, 451, 963, 1050
FspBI CTAG 5 cut(s) 42, 395, 716, 968, 1090
GluI GCNGC 6 cut(s) 349, 352, 362, 451, 963, 1050
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 488, 731
HgaI GACGC 2 cut(s) 278, 513
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 4 cut(s) 60, 118, 434, 688
HindIII AAGCTT 3 cut(s) 323, 629, 902
HinfI GANTC 3 cut(s) 398, 673, 833
HphI GGTGA 4 cut(s) 343, 560, 733, 899
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 5 cut(s) 93, 247, 411, 757, 1035
Hpy188III TCNNGA 5 cut(s) 104, 286, 395, 670, 968
Hpy8I GTNNAC 1 cut(s) 464
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 3 cut(s) 148, 301, 631
HpyCH4III ACNGT 2 cut(s) 444, 1064
HpyCH4IV ACGT 2 cut(s) 66, 79
HpyCH4V TGCA 7 cut(s) 34, 60, 76, 114, 125, 863, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 586, 988, 997
HpyF3I CTNAG 1 cut(s) 848
HpySE526I ACGT 2 cut(s) 66, 79
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 4 cut(s) 60, 118, 434, 688
Kzo9I GATC 2 cut(s) 273, 802
LmnI GCTCC 2 cut(s) 358, 411
Lsp1109I GCAGC 6 cut(s) 348, 360, 363, 462, 974, 1061
LweI GCATC 3 cut(s) 112, 136, 754
MaeI CTAG 5 cut(s) 42, 395, 716, 968, 1090
MaeII ACGT 2 cut(s) 66, 79
MaeIII GTNAC 3 cut(s) 178, 512, 1001
MalI GATC 2 cut(s) 275, 804
MboI GATC 2 cut(s) 273, 802
MboII GAAGA 2 cut(s) 658, 955
MflI RGATCY 1 cut(s) 802
MluCI AATT 5 cut(s) 380, 785, 823, 929, 971
MlyI GAGTC 2 cut(s) 392, 682
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 9 cut(s) 100, 164, 187, 194, 475, 478, 654, 863, 927
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 3 cut(s) 189, 900, 1029
MslI CAYNNNNRTG 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 212, 356, 474
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 3 cut(s) 212, 356, 474
MvnI CGCG 2 cut(s) 272, 1000
MwoI GCNNNNNNNGC 4 cut(s) 53, 586, 988, 997
NdeII GATC 2 cut(s) 273, 802
NlaIII CATG 4 cut(s) 60, 118, 434, 688
NlaIV GGNNCC 1 cut(s) 413
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 1001
NspI RCATGY 2 cut(s) 60, 434
NspV TTCGAA 1 cut(s) 976
OliI CACNNNNGTG 1 cut(s) 546
PaeI GCATGC 1 cut(s) 60
PctI GAATGC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 833
PkrI GCNGC 6 cut(s) 350, 353, 363, 452, 964, 1051
PleI GAGTC 2 cut(s) 392, 681
PpsI GAGTC 2 cut(s) 392, 681
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 210, 354, 472
PspGI CCWGG 3 cut(s) 210, 354, 472
PspN4I GGNNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 802
RsaI GTAC 3 cut(s) 166, 853, 1066
RsaNI GTAC 3 cut(s) 165, 852, 1065
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 3 cut(s) 189, 900, 1029
SatI GCNGC 6 cut(s) 349, 352, 362, 451, 963, 1050
Sau3AI GATC 2 cut(s) 273, 802
SchI GAGTC 2 cut(s) 392, 682
ScrFI CCNGG 3 cut(s) 212, 356, 474
SfaNI GCATC 3 cut(s) 112, 136, 754
SfuI TTCGAA 1 cut(s) 976
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 4 cut(s) 188, 343, 581, 670
SmoI CTYRAG 4 cut(s) 188, 343, 581, 670
SpeI ACTAGT 1 cut(s) 41
SphI GCATGC 1 cut(s) 60
Sse9I AATT 5 cut(s) 380, 785, 823, 929, 971
SspMI CTAG 5 cut(s) 42, 395, 716, 968, 1090
StyD4I CCNGG 3 cut(s) 210, 354, 472
TaaI ACNGT 2 cut(s) 444, 1064
TaiI ACGT 2 cut(s) 69, 82
TaqI TCGA 5 cut(s) 141, 156, 426, 561, 976
TasI AATT 5 cut(s) 380, 785, 823, 929, 971
TatI WGTACW 2 cut(s) 851, 1064
TfiI GAWTC 1 cut(s) 833
Tru1I TTAA 3 cut(s) 189, 900, 1029
Tru9I TTAA 3 cut(s) 189, 900, 1029
TscAI CASTG 1 cut(s) 449
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 6 cut(s) 348, 351, 361, 450, 962, 1049
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 6 cut(s) 17, 131, 186, 320, 673, 1035
TspRI CASTG 1 cut(s) 449
Vha464I CTTAAG 1 cut(s) 188
XapI RAATTY 2 cut(s) 823, 971
XbaI TCTAGA 2 cut(s) 394, 967
XceI RCATGY 2 cut(s) 60, 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 5 cut(s) 42, 395, 716, 968, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.