Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002146.1

Orthogroup ID

OG0007487

Physical Location & Seq

Genomic Coordinates Forward (+)

54563 .. 55701

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002146.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgcaactaactagtgctttgtgggcaagcaagaactttttactgcaacgtgtagggtatcagacagcaaatcaggaggactgcatgaatgatgcaaagttgctgtccttcgatgatgccagcctcgaaaccaggcaaaaaactgctgacgcgatcttggatttcaagagtaagatgattgatatgaaggacgatagctataagcttgtggtgatggaatacttgagcagcagcctggagctgctggacttctttactgaactggaaaagtttctagactcggctcgtcggagccattcacatatcgaacttgctattgaacagtgtagccgcttggggggtaaacatggagtaggaagggaggaggccaagatgatttccaatatattgagtaacattatggcgtctaatgtcaatgaccactctggtgaaaagttggtcgaaaaggctcattgtttgcttgagaagcagaaagaaatgttttccaaatgtcgcattgaacaagagaagcttgggaaggataagaagagtaatgtttggaggaagctcttgagtcgtatattcatggttgccaagtggctcgttctcgttgttctaggggtgaaattggcctataccgcctataatataacatctggtggagatggtttgtctaatgtggttggagatttgaaaatcaaagcagcatgtttccttgatgtctctgttataatagaaatagcagataactggaatagctgccaccttgaagtatgtcaggttgattttgggctgaagaatgaagcaatgaacataatacaggaaggagctttacattccataagagaaatgggggaaataaaagatctcatcggtaaggtactaaattccattgaatctctccttgctttaagtacaaactttgcaaatggtggaaatgtagaagtggcaatcaagaatattaagctttacctgaagaagtttttggataaaattgaggctttggaggagaaaacaggggaatgcagctctagaattttgaaagcaaggcaagctgttctcatgtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

349

Amino Acids

39.2

Weight (kDa)

6.42

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007487)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08240 FvH4_2g08240
rosa_chinensis	RchiOBHm_Chr6g0263091 RchiOBHm_Chr6g0263111
rosa_laevigata	RLG00000014373 RLG00000014376
rosa_multiflora	Rmu_sc0000887.1_g000001 Rmu_sc0002146.1_g000002 Rmu_sc0002146.1_g000008 Rmu_sc0002479.1_g000005 Rmu_sc0010560.1_g000002 Rmu_sc0010560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00204660 Rroxscaffold_7G00204710
rosa_rugosa	Rorug06G0003600 Rorug06G0003700
rosa_samantha	Rh6AG122600 Rh6BG116600 Rh6BG116900 Rh6CG115100 Rh6CG115300 Rh6DG103700 Rh6DG103900 Rh6DG104400
rosa_wichuraiana	Rw6G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	331, 618
AcsI	RAATTY	2 cut(s)	865, 1014
AcuI	CTGAAG	2 cut(s)	794, 974
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	861, 895
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	166, 320, 500, 673, 749, 875, 1021
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	131, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	947, 979
AleI	CACNNNNGTG	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	706
AoxI	GGCC	2 cut(s)	366, 609
ApeKI	GCWGC	6 cut(s)	228, 231, 241, 683, 738, 1005
ApoI	RAATTY	2 cut(s)	865, 1014
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
Asp700I	GAANNNNTTC	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	223, 440, 613
BarI	GAAGNNNNNNTAC	2 cut(s)	795, 827
BbvI	GCAGC	6 cut(s)	228, 240, 243, 695, 725, 1017
BccI	CCATC	2 cut(s)	208, 638
BciT130I	CCWGG	2 cut(s)	133, 236
BcoDI	GTCTC	1 cut(s)	706
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	4 cut(s)	12, 275, 596, 1011
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	7 cut(s)	229, 232, 242, 331, 684, 739, 1006
BlsI	GCNGC	7 cut(s)	230, 233, 243, 332, 685, 740, 1007
Bme1390I	CCNGG	2 cut(s)	133, 236
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	133, 236
BmsI	GCATC	2 cut(s)	82, 106
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	3 cut(s)	244, 482, 571
BsaHI	GRCGYC	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	267, 734
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	133, 236
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	792
BseNI	ACTGG	2 cut(s)	267, 734
BseRI	GAGGAG	2 cut(s)	377, 1001
BseXI	GCAGC	6 cut(s)	228, 240, 243, 695, 725, 1017
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	368, 611
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	706
BsmI	GAATGC	1 cut(s)	1007
BsnI	GGCC	2 cut(s)	368, 611
Bsp143I	GATC	2 cut(s)	153, 844
BspACI	CCGC	2 cut(s)	331, 618
BspANI	GGCC	2 cut(s)	368, 611
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	267, 734
BssMI	GATC	2 cut(s)	153, 844
BssNI	GRCGYC	1 cut(s)	404
Bst2UI	CCWGG	2 cut(s)	133, 236
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	28, 121, 1032
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	2 cut(s)	156, 847
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	2 cut(s)	153, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 466, 617, 1031
BstNI	CCWGG	2 cut(s)	133, 236
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	131, 234
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	6 cut(s)	228, 240, 243, 695, 725, 1017
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BsuRI	GGCC	2 cut(s)	368, 611
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	3 cut(s)	28, 121, 1032
CseI	GACGC	2 cut(s)	158, 393
Csp6I	GTAC	2 cut(s)	860, 894
CviAII	CATG	5 cut(s)	85, 347, 565, 687, 1042
CviQI	GTAC	2 cut(s)	860, 894
DpnI	GATC	2 cut(s)	155, 846
DpnII	GATC	2 cut(s)	153, 844
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	794, 974
EcoRII	CCWGG	2 cut(s)	131, 234
FaeI	CATG	5 cut(s)	88, 350, 568, 690, 1045
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	5 cut(s)	84, 346, 564, 686, 1041
Fnu4HI	GCNGC	7 cut(s)	229, 232, 242, 331, 684, 739, 1006
Fsp4HI	GCNGC	7 cut(s)	229, 232, 242, 331, 684, 739, 1006
FspBI	CTAG	4 cut(s)	12, 275, 596, 1011
GluI	GCNGC	7 cut(s)	229, 232, 242, 331, 684, 739, 1006
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	2 cut(s)	368, 611
HgaI	GACGC	2 cut(s)	158, 393
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	5 cut(s)	88, 350, 568, 690, 1045
HindIII	AAGCTT	3 cut(s)	203, 509, 944
HinfI	GANTC	3 cut(s)	278, 553, 875
HphI	GGTGA	3 cut(s)	223, 440, 613
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	2 cut(s)	63, 291
Hpy188III	TCNNGA	6 cut(s)	74, 166, 275, 550, 934, 1011
Hpy8I	GTNNAC	1 cut(s)	344
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	5 cut(s)	118, 181, 351, 511, 797
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	4, 46, 84, 95, 905, 1005
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 466, 617, 1031
HpySE526I	ACGT	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	5 cut(s)	88, 350, 568, 690, 1045
Kzo9I	GATC	2 cut(s)	153, 844
LmnI	GCTCC	3 cut(s)	238, 291, 806
Lsp1109I	GCAGC	6 cut(s)	228, 240, 243, 695, 725, 1017
LweI	GCATC	2 cut(s)	82, 106
MaeI	CTAG	4 cut(s)	12, 275, 596, 1011
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	2 cut(s)	155, 846
MboI	GATC	2 cut(s)	153, 844
MboII	GAAGA	3 cut(s)	538, 787, 967
MflI	RGATCY	1 cut(s)	844
MluCI	AATT	4 cut(s)	605, 865, 972, 1014
MlyI	GAGTC	2 cut(s)	272, 562
MmeI	TCCRAC	2 cut(s)	269, 643
MnlI	CCTC	7 cut(s)	70, 134, 355, 358, 534, 970, 979
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	3 cut(s)	890, 942, 1048
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	133, 236
Mva1269I	GAATGC	1 cut(s)	1007
MvaI	CCWGG	2 cut(s)	133, 236
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	23, 466, 617, 1031
NdeII	GATC	2 cut(s)	153, 844
NlaIII	CATG	5 cut(s)	88, 350, 568, 690, 1045
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	260
NspI	RCATGY	1 cut(s)	690
OliI	CACNNNNGTG	1 cut(s)	426
PctI	GAATGC	1 cut(s)	1007
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	875
PkrI	GCNGC	7 cut(s)	230, 233, 243, 332, 685, 740, 1007
PleI	GAGTC	2 cut(s)	272, 561
PpsI	GAGTC	2 cut(s)	272, 561
PsiI	TTATAA	1 cut(s)	710
Psp6I	CCWGG	2 cut(s)	131, 234
PspGI	CCWGG	2 cut(s)	131, 234
PspN4I	GGNNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	844
RsaI	GTAC	2 cut(s)	861, 895
RsaNI	GTAC	2 cut(s)	860, 894
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	890, 942, 1048
SatI	GCNGC	7 cut(s)	229, 232, 242, 331, 684, 739, 1006
Sau3AI	GATC	2 cut(s)	153, 844
SchI	GAGTC	2 cut(s)	272, 562
ScrFI	CCNGG	2 cut(s)	133, 236
SfaNI	GCATC	2 cut(s)	82, 106
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	3 cut(s)	223, 461, 550
SmoI	CTYRAG	3 cut(s)	223, 461, 550
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	4 cut(s)	605, 865, 972, 1014
SsiI	CCGC	2 cut(s)	331, 618
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	4 cut(s)	12, 275, 596, 1011
StyD4I	CCNGG	2 cut(s)	131, 234
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	4 cut(s)	111, 126, 306, 441
TasI	AATT	4 cut(s)	605, 865, 972, 1014
TatI	WGTACW	1 cut(s)	893
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	3 cut(s)	890, 942, 1048
Tru9I	TTAA	3 cut(s)	890, 942, 1048
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	6 cut(s)	228, 231, 241, 683, 738, 1005
TspDTI	ATGAA	5 cut(s)	101, 200, 553, 795, 803
TspRI	CASTG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	865, 1014
XbaI	TCTAGA	2 cut(s)	274, 1010
XceI	RCATGY	1 cut(s)	690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	4 cut(s)	12, 275, 596, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.