Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007487

Physical Location & Seq

Genomic Coordinates Reverse (-)

13217432 .. 13220446

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG104400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCTGATTTGGGGCAAAAAACCGCTGGCGCGATCTTGGATTTCAAGAGTAAGACCATTCCTATGGTGGACGACAGCTATAAGCTTGTGGTGAAGGAGTACTTGAGCAGCAGCTTGGAGCTGCTGGAATTCTTTACTGAACTGGAAAAGTTTCTAGACTCAGCTCGTCGGAGCCATTCACATATCGAACATGCGATTGAAGAGTGCAGCAGCTTGGGGAGTAAACATGAATTAGGAAGGGAGGAGGCCAAGATGATTTCGAATATATTGAGTGACATTATGGCGTCTAACGTCAATGACTACTCTGGTGAAAAGTTGGTCGAAAAGGCTCGCTGTTTGCTTGAGAAGCAGGAAGAAATGTTTGACAAATGTTGCAATGAACAAGAGAAGCTTGGGAAGGATCAGAAAAGTATTGATCGTTGGAGGAAGCTCATGAATTATATATCCATGGGTGCTAAGTGCCTCCTTTTCGTTGTTCTGTTGTTTTATTCTGTAAAATCTGTTGGAGATGGTTCGTCTGATATAGTTGGGGAGTTGAAAATCAAAGCAGCATGTTTCTTTCACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

189

Amino Acids

21.42

Weight (kDa)

5.47

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	1 - 169	1.4e-15	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007487)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08240 FvH4_2g08240
rosa_chinensis	RchiOBHm_Chr6g0263091 RchiOBHm_Chr6g0263111
rosa_laevigata	RLG00000014373 RLG00000014376
rosa_multiflora	Rmu_sc0000887.1_g000001 Rmu_sc0002146.1_g000002 Rmu_sc0002146.1_g000008 Rmu_sc0002479.1_g000005 Rmu_sc0010560.1_g000002 Rmu_sc0010560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00204660 Rroxscaffold_7G00204710
rosa_rugosa	Rorug06G0003600 Rorug06G0003700
rosa_samantha	Rh6AG122600 Rh6BG116600 Rh6BG116900 Rh6CG115100 Rh6CG115300 Rh6DG103700 Rh6DG103900 Rh6DG104400
rosa_wichuraiana	Rw6G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	46, 200, 538
AluBI	AGCT	8 cut(s)	78, 85, 114, 121, 164, 213, 391, 430
AluI	AGCT	8 cut(s)	78, 85, 114, 121, 164, 213, 391, 430
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	6 cut(s)	108, 111, 121, 207, 210, 548
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	103, 320
AsuII	TTCGAA	1 cut(s)	260
BbvI	GCAGC	6 cut(s)	108, 120, 123, 219, 222, 560
BccI	CCATC	1 cut(s)	503
BfaI	CTAG	2 cut(s)	155, 568
BisI	GCNGC	6 cut(s)	109, 112, 122, 208, 211, 549
BlsI	GCNGC	6 cut(s)	110, 113, 123, 209, 212, 550
BmcAI	AGTACT	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	124, 362
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	6 cut(s)	108, 120, 123, 219, 222, 560
BsgI	GTGCAG	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	33, 400, 415
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	3 cut(s)	33, 400, 415
BssNI	GRCGYC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	28, 331
BstDEI	CTNAG	2 cut(s)	160, 456
BstDSI	CCRYGG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	36, 403, 418
BstMBI	GATC	3 cut(s)	33, 400, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	194, 555
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	6 cut(s)	108, 120, 123, 219, 222, 560
BstXI	CCANNNNNNTGG	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	28, 331
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	1 cut(s)	32
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	5 cut(s)	191, 227, 433, 448, 552
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	160, 456
DpnI	GATC	3 cut(s)	35, 402, 417
DpnII	GATC	3 cut(s)	33, 400, 415
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	5 cut(s)	194, 230, 436, 451, 555
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 375, 407
FatI	CATG	5 cut(s)	190, 226, 432, 447, 551
Fnu4HI	GCNGC	6 cut(s)	109, 112, 122, 208, 211, 549
Fsp4HI	GCNGC	6 cut(s)	109, 112, 122, 208, 211, 549
FspBI	CTAG	2 cut(s)	155, 568
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	6 cut(s)	109, 112, 122, 208, 211, 549
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	5 cut(s)	194, 230, 436, 451, 555
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	2 cut(s)	83, 389
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	2 cut(s)	103, 320
Hpy166II	GTNNAC	2 cut(s)	70, 224
Hpy188I	TCNGA	4 cut(s)	7, 171, 405, 520
Hpy188III	TCNNGA	4 cut(s)	46, 155, 433, 563
Hpy8I	GTNNAC	2 cut(s)	70, 224
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	3 cut(s)	88, 231, 391
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	207, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	2 cut(s)	160, 456
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	5 cut(s)	194, 230, 436, 451, 555
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	33, 400, 415
LmnI	GCTCC	2 cut(s)	118, 171
LpnPI	CCDG	5 cut(s)	12, 110, 128, 291, 335
Lsp1109I	GCAGC	6 cut(s)	108, 120, 123, 219, 222, 560
MaeI	CTAG	2 cut(s)	155, 568
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	3 cut(s)	35, 402, 417
MboI	GATC	3 cut(s)	33, 400, 415
MboII	GAAGA	2 cut(s)	212, 365
MluCI	AATT	3 cut(s)	128, 230, 436
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	3 cut(s)	149, 401, 484
MnlI	CCTC	4 cut(s)	235, 238, 417, 473
MroXI	GAANNNNTTC	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	3 cut(s)	33, 400, 415
NlaIII	CATG	5 cut(s)	194, 230, 436, 451, 555
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	2 cut(s)	194, 555
NspV	TTCGAA	1 cut(s)	260
PagI	TCATGA	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	150
PkrI	GCNGC	6 cut(s)	110, 113, 123, 209, 212, 550
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	62
SatI	GCNGC	6 cut(s)	109, 112, 122, 208, 211, 549
Sau3AI	GATC	3 cut(s)	33, 400, 415
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	1 cut(s)	152
SetI	ASST	9 cut(s)	80, 87, 116, 123, 166, 215, 294, 393, 432
SfuI	TTCGAA	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	103, 341
SmoI	CTYRAG	2 cut(s)	103, 341
Sse9I	AATT	3 cut(s)	128, 230, 436
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	155, 568
StyI	CCWWGG	1 cut(s)	447
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	186, 260, 321
TasI	AATT	3 cut(s)	128, 230, 436
TatI	WGTACW	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	6 cut(s)	108, 111, 121, 207, 210, 548
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	243, 393, 449
XapI	RAATTY	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	2 cut(s)	194, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	155, 568
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.