Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010560.1

Orthogroup ID

OG0007487

Physical Location & Seq

Genomic Coordinates Reverse (-)

2245 .. 3413

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010560.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgaaggaaacgaaagcaaaaagtattccaatgcaactaactagtgctttgtgggcaagcaagaactttttactgcaacgtgtagggtatcagacagcaaatcaggaggactgcatgaatgatgcaaagttgctgtccttcgatgatgccagcctcgaaaccaggcaaaaaactgctgacgcgatcttggatttcaagagtaagatgattgatatgaaggacgatagctataagcttgtggtgatggaatacttgagcagcagcctggagctgctggacttctttactgaactggaaaagtttctagactcggctcgtcggagccattcacatatcgaacttgctattgaacagtgtagccgcttggggggtaaacatggagtaggaagggaggaggccaagatgatttccaatatattgagtaacattatggcgtctaatgtcaatgaccactctggtgaaaagttggtcgaaaaggctcattgtttgcttgagaagcagaaagaaatgttttccaaatgtcgcattgaacaagagaagcttgggaaggatcagaagagtaatgtttggaggaagctcttgagtcgtatattcatggttgccaaggggctcgttctcgttgttctaggggtgatattggactatacggcctataatataacatctggtggagatggtttgtctaatgtggttggagatttgaaaatcaaagcagcatgtttccttgatgtctctgttataatagaaatagcagataactggaatagctgccaccttgaagtatgtcaggttgattttgggctgaagaatgaagcaatgaacataatacaggaaggagctttacattccataagagaaatgggggaaataaaagatctcatcggtaaggtactaaattccattgaatctctccttgctttaagtacaaactttgcaaatggtggaaatgtagaagtggcaatcaagaatattaagctttacctgaagaagtttttggataaaattgaggctttggaggagaaaacaggggattgcagctctagaattttgaaagcaaggcaagctgttctcatgtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

359

Amino Acids

40.12

Weight (kDa)

6.22

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007487)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08240 FvH4_2g08240
rosa_chinensis	RchiOBHm_Chr6g0263091 RchiOBHm_Chr6g0263111
rosa_laevigata	RLG00000014373 RLG00000014376
rosa_multiflora	Rmu_sc0000887.1_g000001 Rmu_sc0002146.1_g000002 Rmu_sc0002146.1_g000008 Rmu_sc0002479.1_g000005 Rmu_sc0010560.1_g000002 Rmu_sc0010560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00204660 Rroxscaffold_7G00204710
rosa_rugosa	Rorug06G0003600 Rorug06G0003700
rosa_samantha	Rh6AG122600 Rh6BG116600 Rh6BG116900 Rh6CG115100 Rh6CG115300 Rh6DG103700 Rh6DG103900 Rh6DG104400
rosa_wichuraiana	Rw6G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AccII	CGCG	1 cut(s)	182
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	895, 1044
AcuI	CTGAAG	2 cut(s)	824, 1004
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	2 cut(s)	891, 925
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	7 cut(s)	196, 350, 530, 703, 779, 905, 1051
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	2 cut(s)	161, 264
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AleI	CACNNNNGTG	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	736
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	2 cut(s)	396, 648
ApeKI	GCWGC	6 cut(s)	258, 261, 271, 713, 768, 1035
ApoI	RAATTY	2 cut(s)	895, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
Asp700I	GAANNNNTTC	1 cut(s)	300
AsuHPI	GGTGA	3 cut(s)	253, 470, 643
BanII	GRGCYC	1 cut(s)	612
BarI	GAAGNNNNNNTAC	2 cut(s)	825, 857
BbvI	GCAGC	6 cut(s)	258, 270, 273, 725, 755, 1047
BccI	CCATC	2 cut(s)	238, 668
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	2 cut(s)	163, 266
BcoDI	GTCTC	1 cut(s)	736
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	4 cut(s)	42, 305, 626, 1041
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	7 cut(s)	259, 262, 272, 361, 714, 769, 1036
BlsI	GCNGC	7 cut(s)	260, 263, 273, 362, 715, 770, 1037
Bme1390I	CCNGG	2 cut(s)	163, 266
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	163, 266
BmsI	GCATC	2 cut(s)	112, 136
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	3 cut(s)	274, 512, 601
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	297, 764
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	163, 266
BseDI	CCNNGG	1 cut(s)	603
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	822
BseNI	ACTGG	2 cut(s)	297, 764
BseRI	GAGGAG	2 cut(s)	407, 1031
BseXI	GCAGC	6 cut(s)	258, 270, 273, 725, 755, 1047
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	398, 650
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	736
BsnI	GGCC	2 cut(s)	398, 650
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	183, 550, 874
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	2 cut(s)	398, 650
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	558
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	297, 764
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	3 cut(s)	183, 550, 874
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	2 cut(s)	163, 266
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	551
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	58, 151, 1062
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	3 cut(s)	186, 553, 877
BstMAI	GTCTC	1 cut(s)	736
BstMBI	GATC	3 cut(s)	183, 550, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 496, 1061
BstNI	CCWGG	2 cut(s)	163, 266
BstNSI	RCATGY	1 cut(s)	720
BstSCI	CCNGG	2 cut(s)	161, 264
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	6 cut(s)	258, 270, 273, 725, 755, 1047
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuRI	GGCC	2 cut(s)	398, 650
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	58, 151, 1062
CseI	GACGC	2 cut(s)	188, 423
Csp6I	GTAC	2 cut(s)	890, 924
CviAII	CATG	5 cut(s)	115, 377, 595, 717, 1072
CviQI	GTAC	2 cut(s)	890, 924
DpnI	GATC	3 cut(s)	185, 552, 876
DpnII	GATC	3 cut(s)	183, 550, 874
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	612
Eco57I	CTGAAG	2 cut(s)	824, 1004
EcoRII	CCWGG	2 cut(s)	161, 264
EcoT14I	CCWWGG	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	5 cut(s)	118, 380, 598, 720, 1075
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	5 cut(s)	114, 376, 594, 716, 1071
Fnu4HI	GCNGC	7 cut(s)	259, 262, 272, 361, 714, 769, 1036
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	7 cut(s)	259, 262, 272, 361, 714, 769, 1036
FspBI	CTAG	4 cut(s)	42, 305, 626, 1041
GluI	GCNGC	7 cut(s)	259, 262, 272, 361, 714, 769, 1036
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	398, 650
HgaI	GACGC	2 cut(s)	188, 423
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	5 cut(s)	118, 380, 598, 720, 1075
HindIII	AAGCTT	3 cut(s)	233, 539, 974
HinfI	GANTC	3 cut(s)	308, 583, 905
HphI	GGTGA	3 cut(s)	253, 470, 643
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	3 cut(s)	93, 321, 555
Hpy188III	TCNNGA	6 cut(s)	104, 196, 305, 580, 964, 1041
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	321
HpyAV	CCTTC	5 cut(s)	148, 211, 381, 541, 827
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	6 cut(s)	34, 76, 114, 125, 935, 1035
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 496, 1061
HpySE526I	ACGT	1 cut(s)	79
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	5 cut(s)	118, 380, 598, 720, 1075
Kzo9I	GATC	3 cut(s)	183, 550, 874
LmnI	GCTCC	3 cut(s)	268, 321, 836
Lsp1109I	GCAGC	6 cut(s)	258, 270, 273, 725, 755, 1047
LweI	GCATC	2 cut(s)	112, 136
MaeI	CTAG	4 cut(s)	42, 305, 626, 1041
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	3 cut(s)	185, 552, 876
MboI	GATC	3 cut(s)	183, 550, 874
MboII	GAAGA	3 cut(s)	568, 817, 997
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	3 cut(s)	895, 1002, 1044
MlyI	GAGTC	2 cut(s)	302, 592
MmeI	TCCRAC	2 cut(s)	299, 673
MnlI	CCTC	7 cut(s)	100, 164, 385, 388, 564, 1000, 1009
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	3 cut(s)	920, 972, 1078
MslI	CAYNNNNRTG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	163, 266
MvaI	CCWGG	2 cut(s)	163, 266
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	53, 496, 1061
NdeII	GATC	3 cut(s)	183, 550, 874
NlaIII	CATG	5 cut(s)	118, 380, 598, 720, 1075
NlaIV	GGNNCC	1 cut(s)	323
NmeAIII	GCCGAG	1 cut(s)	290
NspI	RCATGY	1 cut(s)	720
OliI	CACNNNNGTG	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	905
PkrI	GCNGC	7 cut(s)	260, 263, 273, 362, 715, 770, 1037
PleI	GAGTC	2 cut(s)	302, 591
PpsI	GAGTC	2 cut(s)	302, 591
PsiI	TTATAA	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	161, 264
PspGI	CCWGG	2 cut(s)	161, 264
PspN4I	GGNNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	874
RsaI	GTAC	2 cut(s)	891, 925
RsaNI	GTAC	2 cut(s)	890, 924
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	920, 972, 1078
SatI	GCNGC	7 cut(s)	259, 262, 272, 361, 714, 769, 1036
Sau3AI	GATC	3 cut(s)	183, 550, 874
SchI	GAGTC	2 cut(s)	302, 592
ScrFI	CCNGG	2 cut(s)	163, 266
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	2 cut(s)	112, 136
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	3 cut(s)	253, 491, 580
SmoI	CTYRAG	3 cut(s)	253, 491, 580
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	3 cut(s)	895, 1002, 1044
SsiI	CCGC	1 cut(s)	361
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	4 cut(s)	42, 305, 626, 1041
StyD4I	CCNGG	2 cut(s)	161, 264
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	4 cut(s)	141, 156, 336, 471
TasI	AATT	3 cut(s)	895, 1002, 1044
TatI	WGTACW	1 cut(s)	923
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	905
Tru1I	TTAA	3 cut(s)	920, 972, 1078
Tru9I	TTAA	3 cut(s)	920, 972, 1078
TscAI	CASTG	1 cut(s)	359
TseI	GCWGC	6 cut(s)	258, 261, 271, 713, 768, 1035
TspDTI	ATGAA	6 cut(s)	17, 131, 230, 583, 825, 833
TspRI	CASTG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	895, 1044
XbaI	TCTAGA	2 cut(s)	304, 1040
XceI	RCATGY	1 cut(s)	720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	4 cut(s)	42, 305, 626, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.