Rmu_sc0001037.1_g000010

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001037.1
OG0005437
Physical Location & Seq
Forward (+)
44110 .. 46544
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
atgcaaagcgaaaggcaaggcagacgcggtttctctcgctcagatgacctgttaaatagtttcccgggatttggatctcgtagaagcatgttgcctagcctctttagtggaagggatccatttgatgatcccttcttcagtcggccgcttggagacatgtttgagtctagcatgttccgtccaagtgctgcttctagtgatacaccaaagagtggtagagatgggggaatcatagtagaagaactagactctgatgatgatggagaggaagatgaggttactggagatgggagagataagaggaagcaacgaactgtgtcaagcgaagagccatctgttgagcatccggatgatgatgatatggatgaagagacaggcaagaacacgagtaaaagaggtgatttcaacaaggtgcaaggcacacagccccagggtcgtagtgcctctgttcagagttgcagagtcacatatggtggtgtagatggagcatattacacttctacaagaaccagaagggcaggcaatgatggcgtgaagattgaggagaccaaagaagcagataggacaactggtcgagcaacacataagatatctagaggaattcatgataagggtcattctgttacaaggaagcttaacccagatggaaaggtggatgtgttgcaaactttacacaatctgaatgaagatgagcttgctggttttgaagaagcatggaatggtaatgttaaggtggacttacctggctggaaagaatttgacaaccttggtgaacggaatgcaccttggagtgctgggctccttcaatcttcagagcaaccacaaagctccagagggtttagaccagggaatgtaaccgggactacctctgatgggagaaccaagaaggttgttagaatcaatatagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

303

Amino Acids

33.44

Weight (kDa)

5.2

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 93 - 241 6.1e-21 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccII CGCG 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 2 cut(s) 27, 146
AclWI GGATC 4 cut(s) 82, 110, 122, 123
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 600, 755
AcuI CTGAAG 2 cut(s) 121, 795
AfiI CCNNNNNNNGG 3 cut(s) 71, 212, 873
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 3 cut(s) 406, 707, 806
AhdI GACNNNNNGTC 1 cut(s) 570
AjnI CCWGG 3 cut(s) 429, 742, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 3 cut(s) 634, 694, 828
AluI AGCT 3 cut(s) 634, 694, 828
Alw26I GTCTC 3 cut(s) 147, 365, 539
AlwI GGATC 4 cut(s) 82, 110, 122, 123
Ama87I CYCGRG 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 2 cut(s) 600, 755
AsuC2I CCSGG 3 cut(s) 65, 66, 859
AsuHPI GGTGA 2 cut(s) 410, 782
AvaI CYCGRG 1 cut(s) 64
BamHI GGATCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 801
BauI CACGAG 1 cut(s) 385
BbvI GCAGC 1 cut(s) 175
BccI CCATC 8 cut(s) 215, 254, 281, 340, 476, 521, 638, 866
BciT130I CCWGG 3 cut(s) 431, 744, 846
BcnI CCSGG 3 cut(s) 65, 66, 859
BcoDI GTCTC 3 cut(s) 147, 365, 539
BfaI CTAG 5 cut(s) 96, 168, 195, 245, 594
BisI GCNGC 2 cut(s) 146, 189
BlsI GCNGC 2 cut(s) 147, 190
Bme1390I CCNGG 6 cut(s) 65, 66, 431, 744, 846, 859
BmeRI GACNNNNNGTC 1 cut(s) 570
BmeT110I CYCGRG 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 117, 800
BmrFI CCNGG 6 cut(s) 65, 66, 431, 744, 846, 859
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 2 cut(s) 303, 814
BpuMI CCSGG 3 cut(s) 65, 66, 859
BsaBI GATNNNNATC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 6 cut(s) 64, 429, 430, 766, 785, 845
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 212, 873
Bse1I ACTGG 2 cut(s) 286, 574
Bse3DI GCAATG 1 cut(s) 529
Bse8I GATNNNNATC 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 346
BseBI CCWGG 3 cut(s) 431, 744, 846
BseDI CCNNGG 6 cut(s) 64, 429, 430, 766, 785, 845
BseGI GGATG 4 cut(s) 343, 355, 370, 661
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 71, 212, 873
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 286, 574
BseRI GAGGAG 1 cut(s) 557
BseX3I CGGCCG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 794
Bsh1236I CGCG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 3 cut(s) 65, 347, 858
BslFI GGGAC 1 cut(s) 874
BslI CCNNNNNNNGG 3 cut(s) 71, 212, 873
BsmAI GTCTC 3 cut(s) 147, 365, 539
BsmFI GGGAC 1 cut(s) 874
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 801
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 74, 115, 127
BspACI CCGC 2 cut(s) 27, 146
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 53
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 117, 800
BspPI GGATC 4 cut(s) 82, 110, 122, 123
BspQI GCTCTTC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 529
BsrI ACTGG 2 cut(s) 286, 574
BssECI CCNNGG 6 cut(s) 64, 429, 430, 766, 785, 845
BssMI GATC 3 cut(s) 74, 115, 127
BssSI CACGAG 1 cut(s) 385
BssT1I CCWWGG 2 cut(s) 766, 785
Bst2BI CACGAG 1 cut(s) 385
Bst2UI CCWGG 3 cut(s) 431, 744, 846
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 2 cut(s) 321, 363
BstC8I GCNNGC 2 cut(s) 520, 696
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 4 cut(s) 343, 355, 370, 661
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 77, 118, 130
BstMAI GTCTC 3 cut(s) 147, 365, 539
BstMBI GATC 3 cut(s) 74, 115, 127
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 528
BstNI CCWGG 3 cut(s) 431, 744, 846
BstNSI RCATGY 3 cut(s) 91, 160, 175
BstSCI CCNGG 6 cut(s) 63, 64, 429, 742, 844, 857
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 2 cut(s) 74, 115
BstYI RGATCY 2 cut(s) 74, 115
BstZI CGGCCG 1 cut(s) 143
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 4 cut(s) 343, 355, 370, 661
Cac8I GCNNGC 2 cut(s) 520, 696
CciI TCATGA 1 cut(s) 604
Cfr9I CCCGGG 1 cut(s) 64
CseI GACGC 1 cut(s) 33
CviAII CATG 5 cut(s) 88, 157, 172, 605, 714
CviJI RGCY 9 cut(s) 99, 145, 331, 427, 634, 694, 747, 799, 828
CviKI_1 RGCY 9 cut(s) 99, 145, 331, 427, 634, 694, 747, 799, 828
DdeI CTNAG 1 cut(s) 40
DpnI GATC 3 cut(s) 76, 117, 129
DpnII GATC 3 cut(s) 74, 115, 127
DriI GACNNNNNGTC 1 cut(s) 570
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 321, 363
Eam1105I GACNNNNNGTC 1 cut(s) 570
EarI CTCTTC 2 cut(s) 321, 363
EclXI CGGCCG 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 766, 785
Eco24I GRGCYC 1 cut(s) 801
Eco31I GGTCTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 591
Eco52I CGGCCG 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 121, 795
Eco88I CYCGRG 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 3 cut(s) 429, 742, 844
EcoRV GATATC 1 cut(s) 591
EcoT14I CCWWGG 2 cut(s) 766, 785
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 2 cut(s) 766, 785
FaeI CATG 5 cut(s) 91, 160, 175, 608, 717
FalI AAGNNNNNCTT 6 cut(s) 175, 207, 678, 710, 722, 754
FaqI GGGAC 1 cut(s) 874
FatI CATG 5 cut(s) 87, 156, 171, 604, 713
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 2 cut(s) 146, 189
FokI GGATG 4 cut(s) 330, 362, 377, 668
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 2 cut(s) 146, 189
FspBI CTAG 5 cut(s) 96, 168, 195, 245, 594
GluI GCNGC 2 cut(s) 146, 189
GsaI CCCAGC 1 cut(s) 798
GsuI CTGGAG 2 cut(s) 303, 814
HaeIII GGCC 1 cut(s) 145
HapII CCGG 3 cut(s) 65, 347, 858
HgaI GACGC 1 cut(s) 33
Hin1II CATG 5 cut(s) 91, 160, 175, 608, 717
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 5 cut(s) 164, 228, 248, 462, 897
HpaII CCGG 3 cut(s) 65, 347, 858
HphI GGTGA 2 cut(s) 410, 782
Hpy166II GTNNAC 2 cut(s) 736, 773
Hpy188I TCNGA 6 cut(s) 43, 253, 453, 681, 814, 871
Hpy188III TCNNGA 4 cut(s) 347, 594, 605, 831
Hpy8I GTNNAC 2 cut(s) 736, 773
HpyAV CCTTC 5 cut(s) 105, 142, 507, 812, 880
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 5 cut(s) 4, 415, 459, 664, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 528
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 5 cut(s) 91, 160, 175, 608, 717
Kpn2I TCCGGA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 74, 115, 127
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 485, 804, 833
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 352
MaeI CTAG 5 cut(s) 96, 168, 195, 245, 594
MaeIII GTNAC 4 cut(s) 277, 463, 622, 853
MalI GATC 3 cut(s) 76, 117, 129
MboI GATC 3 cut(s) 74, 115, 127
MboII GAAGA 9 cut(s) 127, 251, 281, 338, 380, 547, 698, 719, 801
MflI RGATCY 2 cut(s) 74, 115
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 2 cut(s) 600, 755
MlyI GAGTC 3 cut(s) 173, 242, 471
MroI TCCGGA 1 cut(s) 346
MseI TTAA 3 cut(s) 53, 636, 729
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 3 cut(s) 65, 347, 858
MspR9I CCNGG 6 cut(s) 65, 66, 431, 744, 846, 859
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 3 cut(s) 431, 744, 846
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 528
NciI CCSGG 3 cut(s) 65, 66, 859
NdeI CATATG 1 cut(s) 469
NdeII GATC 3 cut(s) 74, 115, 127
NlaIII CATG 5 cut(s) 91, 160, 175, 608, 717
NlaIV GGNNCC 2 cut(s) 117, 800
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 3 cut(s) 91, 160, 175
PagI TCATGA 1 cut(s) 604
PasI CCCWGGG 1 cut(s) 430
PciI ACATGT 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 2 cut(s) 228, 897
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 2 cut(s) 147, 190
PleI GAGTC 3 cut(s) 172, 242, 470
PpsI GAGTC 3 cut(s) 172, 242, 470
PscI ACATGT 1 cut(s) 156
Psp6I CCWGG 3 cut(s) 429, 742, 844
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 3 cut(s) 429, 742, 844
PspN4I GGNNCC 2 cut(s) 117, 800
PsuI RGATCY 2 cut(s) 74, 115
RseI CAYNNNNRTG 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 3 cut(s) 53, 636, 729
SatI GCNGC 2 cut(s) 146, 189
Sau3AI GATC 3 cut(s) 74, 115, 127
SchI GAGTC 3 cut(s) 173, 242, 471
ScrFI CCNGG 6 cut(s) 65, 66, 431, 744, 846, 859
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 1 cut(s) 352
SmaI CCCGGG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 2 cut(s) 600, 755
SsiI CCGC 2 cut(s) 27, 146
SspMI CTAG 5 cut(s) 96, 168, 195, 245, 594
StyD4I CCNGG 6 cut(s) 63, 64, 429, 742, 844, 857
StyI CCWWGG 2 cut(s) 766, 785
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 574
TasI AATT 2 cut(s) 600, 755
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 2 cut(s) 228, 897
Tru1I TTAA 3 cut(s) 53, 636, 729
Tru9I TTAA 3 cut(s) 53, 636, 729
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 3 cut(s) 381, 593, 699
TspGWI ACGGA 2 cut(s) 167, 790
TspMI CCCGGG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 212
XapI RAATTY 2 cut(s) 600, 755
XbaI TCTAGA 1 cut(s) 593
XceI RCATGY 3 cut(s) 91, 160, 175
XmaI CCCGGG 1 cut(s) 64
XspI CTAG 5 cut(s) 96, 168, 195, 245, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.