Rmu_sc0001370.1_g000002

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001370.1
OG0012880
Physical Location & Seq
Forward (+)
7862 .. 8713
852 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
atgcccactagtactactcctcctgaagtttccgagatgaaacggccgagactaatccagagcatgcctgctgcttacccaccgccatcctctgccgacccgcttccctgcccgcgctgcaactccacccagacgaagttctgctactacaacaactacaacctcgctcagccccgccacttctgcaagggctgccgccgctactggactcgtggtggggccctccgcaacgtccccgtcggcggcggaactcgcaacaagaaacccaaactccctcatcgcgcctcctcctccaactcctccagctcgccttcctcttcgtccctcacccacgagaccaccgcaccgaacaaacccacttccgactccgctgtggaaaagcccgatttgccctccgaccaacaaccacaacaacaacaacttctcaacctgaacgacaacgttacgagtgaaggagggttttcgtttctgacgatgatgaacgctcaggaacaacctgggtttttgtcccttggtgggtatgggtacgggtcggggtttgcccatgggttccagcaaggttacgggtacggcgccagagccgcaggggttgattttccgatggagatggccggtgcttttgctggtgtctatggtgtttctggggctgctacttcttccggagttgacatcaacacgtggcagatggcggttgctgatcatgaaggtcaaggtggtggattggttgattggccgggggttcagattctcgattccgtgccagctgtcagtggtggtggtggtggtgtcaaggaagaaaaggtggcagctgatccctcaactgacccttgtcttaatttccctgcattctga

Protein Analysis

283

Amino Acids

29.83

Weight (kDa)

6.51

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 34 - 88 8.5e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 572
AccII CGCG 2 cut(s) 115, 282
AccIII TCCGGA 1 cut(s) 659
AclI AACGTT 1 cut(s) 441
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 3 cut(s) 44, 609, 731
AcuI CTGAAG 1 cut(s) 45
AcvI CACGTG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 573
AfaI GTAC 3 cut(s) 13, 527, 569
AfiI CCNNNNNNNGG 2 cut(s) 242, 516
AflIII ACRYGT 1 cut(s) 675
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 3 cut(s) 306, 764, 809
AluI AGCT 3 cut(s) 306, 764, 809
Alw26I GTCTC 2 cut(s) 43, 329
AlwI GGATC 1 cut(s) 806
Aor13HI TCCGGA 1 cut(s) 659
AoxI GGCC 4 cut(s) 44, 219, 609, 731
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 71, 117, 192, 647, 806
AspLEI GCGC 3 cut(s) 117, 284, 575
AspS9I GGNCC 2 cut(s) 219, 220
AsuC2I CCSGG 1 cut(s) 735
AsuHPI GGTGA 1 cut(s) 319
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BauI CACGAG 2 cut(s) 210, 332
BbrPI CACGTG 1 cut(s) 678
BbvI GCAGC 5 cut(s) 58, 104, 179, 634, 818
BccI CCATC 4 cut(s) 94, 595, 601, 679
BceAI ACGGC 2 cut(s) 59, 586
BciT130I CCWGG 1 cut(s) 498
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 1 cut(s) 735
BcoDI GTCTC 2 cut(s) 43, 329
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 576
BisI GCNGC 9 cut(s) 72, 118, 193, 196, 199, 244, 582, 648, 807
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 9 cut(s) 73, 119, 194, 197, 200, 245, 583, 649, 808
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 498, 735
BmgT120I GGNCC 2 cut(s) 219, 220
BmiI GGNNCC 4 cut(s) 220, 221, 551, 574
BmrFI CCNGG 2 cut(s) 498, 735
BoxI GACNNNNGTC 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 486
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 735
BsaAI YACGTR 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 573
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 497, 511, 544, 734
BsaWI WCCGGW 1 cut(s) 659
BsaXI ACNNNNNCTCC 3 cut(s) 34, 255, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 516
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 209
BseAI TCCGGA 1 cut(s) 659
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 4 cut(s) 497, 511, 544, 734
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 242, 516
BseMII CTCAG 2 cut(s) 182, 500
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 4 cut(s) 9, 277, 280, 289
BseSI GKGCMC 1 cut(s) 223
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 5 cut(s) 58, 104, 179, 634, 818
Bsh1236I CGCG 2 cut(s) 115, 282
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 4 cut(s) 46, 221, 611, 733
BshNI GGYRCC 1 cut(s) 572
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 3 cut(s) 612, 660, 734
BslFI GGGAC 3 cut(s) 218, 307, 493
BslI CCNNNNNNNGG 2 cut(s) 242, 516
BsmAI GTCTC 2 cut(s) 43, 329
BsmFI GGGAC 3 cut(s) 218, 307, 493
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 4 cut(s) 46, 221, 611, 733
Bso31I GGTCTC 1 cut(s) 329
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 223
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 2 cut(s) 697, 811
Bsp1720I GCTNAGC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 544
BspANI GGCC 4 cut(s) 46, 221, 611, 733
BspCNI CTCAG 2 cut(s) 181, 499
BspEI TCCGGA 1 cut(s) 659
BspFNI CGCG 2 cut(s) 115, 282
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 4 cut(s) 220, 221, 551, 574
BspPI GGATC 1 cut(s) 806
BspT107I GGYRCC 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 611
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 611
BssECI CCNNGG 4 cut(s) 497, 511, 544, 734
BssMI GATC 2 cut(s) 697, 811
BssNI GRCGYC 1 cut(s) 573
BssSI CACGAG 2 cut(s) 210, 332
BssT1I CCWWGG 2 cut(s) 511, 544
Bst2BI CACGAG 2 cut(s) 210, 332
Bst2UI CCWGG 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 322
BstACI GRCGYC 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 678
BstC8I GCNNGC 5 cut(s) 65, 69, 113, 308, 762
BstDEI CTNAG 2 cut(s) 168, 486
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 115, 282
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 3 cut(s) 117, 284, 575
BstKTI GATC 2 cut(s) 700, 814
BstMAI GTCTC 2 cut(s) 43, 329
BstMBI GATC 2 cut(s) 697, 811
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 7 cut(s) 117, 183, 192, 198, 252, 388, 581
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 67
BstPAI GACNNNNGTC 1 cut(s) 828
BstSCI CCNGG 2 cut(s) 496, 733
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 2 cut(s) 115, 282
BstV1I GCAGC 5 cut(s) 58, 104, 179, 634, 818
BstZI CGGCCG 1 cut(s) 44
BsuRI GGCC 4 cut(s) 46, 221, 611, 733
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 775
Cac8I GCNNGC 5 cut(s) 65, 69, 113, 308, 762
CciI TCATGA 1 cut(s) 700
CfoI GCGC 3 cut(s) 117, 284, 575
Cfr10I RCCGGY 1 cut(s) 611
Cfr13I GGNCC 2 cut(s) 219, 220
Csp6I GTAC 3 cut(s) 12, 526, 568
CviAII CATG 3 cut(s) 64, 545, 701
CviQI GTAC 3 cut(s) 12, 526, 568
DdeI CTNAG 2 cut(s) 168, 486
DinI GGCGCC 1 cut(s) 574
DpnI GATC 2 cut(s) 699, 813
DpnII GATC 2 cut(s) 697, 811
EaeI YGGCCR 3 cut(s) 44, 609, 731
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
EciI GGCGGA 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 511, 544
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 329
Eco52I CGGCCG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 45
Eco72I CACGTG 1 cut(s) 678
EcoO109I RGGNCCY 2 cut(s) 219, 220
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 511, 544
EcoT38I GRGCYC 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 574
EheI GGCGCC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 511, 544
FaeI CATG 3 cut(s) 67, 548, 704
FaiI YATR 5 cut(s) 65, 522, 546, 633, 702
FaqI GGGAC 3 cut(s) 218, 307, 493
FatI CATG 3 cut(s) 63, 544, 700
FauI CCCGC 3 cut(s) 108, 120, 182
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 9 cut(s) 72, 118, 193, 196, 199, 244, 582, 648, 807
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 9 cut(s) 72, 118, 193, 196, 199, 244, 582, 648, 807
FspBI CTAG 1 cut(s) 9
GlaI GCGC 3 cut(s) 116, 283, 574
GluI GCNGC 9 cut(s) 72, 118, 193, 196, 199, 244, 582, 648, 807
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 4 cut(s) 46, 221, 611, 733
HapII CCGG 3 cut(s) 612, 660, 734
HhaI GCGC 3 cut(s) 117, 284, 575
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 3 cut(s) 67, 548, 704
Hin6I GCGC 3 cut(s) 115, 282, 573
HinP1I GCGC 3 cut(s) 115, 282, 573
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 4 cut(s) 208, 365, 745, 752
HpaII CCGG 3 cut(s) 612, 660, 734
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 7 cut(s) 34, 364, 397, 471, 600, 744, 851
Hpy188III TCNNGA 6 cut(s) 23, 58, 488, 660, 701, 749
Hpy8I GTNNAC 1 cut(s) 667
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 321, 446, 698
HpyCH4IV ACGT 3 cut(s) 231, 441, 677
HpyCH4V TGCA 3 cut(s) 120, 186, 845
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 183, 192, 198, 252, 388, 581
HpyF3I CTNAG 2 cut(s) 168, 486
HpySE526I ACGT 3 cut(s) 231, 441, 677
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 3 cut(s) 67, 548, 704
HspAI GCGC 3 cut(s) 115, 282, 573
KasI GGCGCC 1 cut(s) 572
Kpn2I TCCGGA 1 cut(s) 659
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 2 cut(s) 697, 811
Lsp1109I GCAGC 5 cut(s) 58, 104, 179, 634, 818
MaeI CTAG 1 cut(s) 9
MaeII ACGT 3 cut(s) 231, 441, 677
MaeIII GTNAC 2 cut(s) 442, 560
MalI GATC 2 cut(s) 699, 813
MboI GATC 2 cut(s) 697, 811
MboII GAAGA 3 cut(s) 309, 648, 806
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 1 cut(s) 835
Mly113I GGCGCC 1 cut(s) 573
MlyI GAGTC 2 cut(s) 202, 359
MmeI TCCRAC 3 cut(s) 318, 387, 420
MroI TCCGGA 1 cut(s) 659
MseI TTAA 1 cut(s) 834
MspA1I CMGCKG 3 cut(s) 371, 764, 809
MspI CCGG 3 cut(s) 612, 660, 734
MspR9I CCNGG 2 cut(s) 498, 735
Mva1269I GAATGC 1 cut(s) 845
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 2 cut(s) 115, 282
MwoI GCNNNNNNNGC 7 cut(s) 117, 183, 192, 198, 252, 388, 581
NarI GGCGCC 1 cut(s) 573
NciI CCSGG 1 cut(s) 735
NcoI CCATGG 1 cut(s) 544
NdeII GATC 2 cut(s) 697, 811
NlaIII CATG 3 cut(s) 67, 548, 704
NlaIV GGNNCC 4 cut(s) 220, 221, 551, 574
NmeAIII GCCGAG 1 cut(s) 72
NspI RCATGY 1 cut(s) 67
PaeI GCATGC 1 cut(s) 67
PagI TCATGA 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PctI GAATGC 1 cut(s) 845
PfeI GAWTC 2 cut(s) 745, 752
PkrI GCNGC 9 cut(s) 73, 119, 194, 197, 200, 245, 583, 649, 808
PleI GAGTC 2 cut(s) 202, 359
PluTI GGCGCC 1 cut(s) 576
PmaCI CACGTG 1 cut(s) 678
PmlI CACGTG 1 cut(s) 678
PpsI GAGTC 2 cut(s) 202, 359
Ppu21I YACGTR 1 cut(s) 678
PshAI GACNNNNGTC 1 cut(s) 828
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 496
PspCI CACGTG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 4 cut(s) 220, 221, 551, 574
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 219, 220
PvuII CAGCTG 2 cut(s) 764, 809
RsaI GTAC 3 cut(s) 13, 527, 569
RsaNI GTAC 3 cut(s) 12, 526, 568
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 9 cut(s) 72, 118, 193, 196, 199, 244, 582, 648, 807
Sau3AI GATC 2 cut(s) 697, 811
Sau96I GGNCC 2 cut(s) 219, 220
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 202, 359
ScrFI CCNGG 2 cut(s) 498, 735
SduI GDGCHC 1 cut(s) 223
SfoI GGCGCC 1 cut(s) 574
SpeI ACTAGT 1 cut(s) 8
SphI GCATGC 1 cut(s) 67
Sse9I AATT 1 cut(s) 835
SspDI GGCGCC 1 cut(s) 572
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 496, 733
StyI CCWWGG 2 cut(s) 511, 544
TaiI ACGT 3 cut(s) 234, 444, 680
TaqI TCGA 1 cut(s) 750
TasI AATT 1 cut(s) 835
TatI WGTACW 1 cut(s) 11
TauI GCSGC 4 cut(s) 198, 201, 246, 584
TfiI GAWTC 2 cut(s) 745, 752
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 1 cut(s) 775
TseI GCWGC 5 cut(s) 71, 117, 192, 647, 806
TspDTI ATGAA 3 cut(s) 53, 494, 717
TspGWI ACGGA 1 cut(s) 745
TspRI CASTG 1 cut(s) 775
XceI RCATGY 1 cut(s) 67
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.