Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001386.1

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Reverse (-)

94394 .. 95698

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

atggggttttctcagagaaagctcctcccagaaaacatctttaacaatccaggtgaagccttctgtaaaccttactgtgacccaaatctaaataagcaaggcttgtgtgatgaatcttgctgcaaaatctgcccacaagtctgtaaattttctgtgggtgatgatgataatcttccaccaccatatttaccagcttttcctgacccatctctactactaccgccgccgccgccgccgccgccccctgaggcatctgattctagaccagactatactggccagaagcatctgatccaaacgagtatgatagttgggtcctgtatgatcggggtttctctttttctctgtattgtttttgcaattatgagatactattcgaggcggagaaatcccagaaggagaagcccgccgattctgtttgctacggcggaagattttcttgatgaggatcatgggcctgtgcttgatcaccccatttggtacatccacactgtgggtctgcctcaggctttgatcgattccattacagtttgtaagtatagaaaagatgagggtttgattgaggggacggattgttctgtttgcttgagtgagtttgaggaagatgagagtctcaggcttttgccaaagtgtagtcatgcttttcacatcccttgtattgatacatggttgagatcacataagaattgccctctttgccgcgctccgattgtttgtggtgctgcgagtaatcaagtgagtgtcccggattcgattgcgagtggttcgggttctggggagagcattcgggtggagaatttggagagtgttgaagggattggaagagggactagtgaggttggaggtacagatgatgagaatgtcggtgcaaattctgttgatggaaggagtgttgaaagttcaaaggttttgcctaattctattttggctgagggaagttctgatccaagagcattgagcgatttggcggataatagacgagtgactgaagatgatgtacagccaatgaggaggtcagtgtcggtggattcggtgtctgcttcaagaatatatcatgctgtggccaatgctattccggaacaaggaagttcgaattcccaattagtacttgtaaagaatccaaagttggggattgttcggaagcaggacagtgcaagttctaccctatccaagcattggagaagttcttcaaatggtctttctctgcagatggtgccaatggcaatgaaaaggcctttcccctctggcaggaagcttttctcatcgaaacacagaaggactcttagctcagtccttcccttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

434

Amino Acids

47.38

Weight (kDa)

6.23

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	191 - 234	3.2e-14	Ring finger domain
zf-RING_11	PF17123	191 - 220	1.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	192 - 233	1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	192 - 233	1.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	194 - 234	5.6e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1213
AccB7I	CCANNNNNTGG	2 cut(s)	493, 1176
AccII	CGCG	1 cut(s)	702
AccIII	TCCGGA	1 cut(s)	1075
AclWI	GGATC	3 cut(s)	286, 456, 938
AcoI	YGGCCR	2 cut(s)	277, 1062
AcsI	RAATTY	4 cut(s)	146, 796, 871, 1093
AcuI	CTGAAG	1 cut(s)	1008
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	4 cut(s)	482, 847, 999, 1107
AfiI	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
AgsI	TTSAA	5 cut(s)	812, 896, 903, 1044, 1191
AhlI	ACTAGT	1 cut(s)	830
AjnI	CCWGG	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	1109, 1141
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
AluBI	AGCT	4 cut(s)	22, 194, 1255, 1287
AluI	AGCT	4 cut(s)	22, 194, 1255, 1287
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	3 cut(s)	286, 456, 938
Aor13HI	TCCGGA	1 cut(s)	1075
AoxI	GGCC	4 cut(s)	277, 455, 1062, 1232
ApeKI	GCWGC	2 cut(s)	120, 722
ApoI	RAATTY	4 cut(s)	146, 796, 871, 1093
Asp700I	GAANNNNTTC	3 cut(s)	435, 1186, 1256
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	315, 455
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	3 cut(s)	65, 170, 461
AsuII	TTCGAA	1 cut(s)	1091
AvaII	GGWCC	1 cut(s)	315
AxyI	CCTNAGG	2 cut(s)	246, 504
BalI	TGGCCA	2 cut(s)	279, 1064
BanI	GGYRCC	1 cut(s)	1213
BarI	GAAGNNNNNNTAC	2 cut(s)	981, 1013
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	107, 709
BccI	CCATC	3 cut(s)	214, 875, 1204
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	617
BcuI	ACTAGT	1 cut(s)	830
BfaI	CTAG	2 cut(s)	261, 831
BfmI	CTRYAG	1 cut(s)	1205
BisI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
BlsI	GCNGC	9 cut(s)	122, 225, 228, 231, 234, 237, 240, 701, 724
BmcAI	AGTACT	1 cut(s)	1107
Bme1390I	CCNGG	2 cut(s)	51, 746
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	315, 455
BmiI	GGNNCC	2 cut(s)	316, 1215
BmrFI	CCNGG	2 cut(s)	51, 746
BmsI	GCATC	2 cut(s)	260, 295
Bpu10I	CCTNAGC	1 cut(s)	930
Bpu14I	TTCGAA	1 cut(s)	1091
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	746
Bsa29I	ATCGAT	1 cut(s)	516
BsaBI	GATNNNNATC	2 cut(s)	168, 447
BsaWI	WCCGGW	1 cut(s)	1075
Bsc4I	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	2 cut(s)	246, 504
Bse3DI	GCAATG	1 cut(s)	1230
Bse8I	GATNNNNATC	2 cut(s)	168, 447
BseAI	TCCGGA	1 cut(s)	1075
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	516
BseGI	GGATG	2 cut(s)	483, 648
BseJI	GATNNNNATC	2 cut(s)	168, 447
BseLI	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
BseMI	GCAATG	1 cut(s)	1230
BseMII	CTCAG	6 cut(s)	26, 237, 518, 628, 921, 1302
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	14, 1024
BseXI	GCAGC	2 cut(s)	107, 709
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	4 cut(s)	279, 457, 1064, 1234
BshNI	GGYRCC	1 cut(s)	1213
BshVI	ATCGAT	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	746, 1076
BslFI	GGGAC	3 cut(s)	580, 728, 841
BslI	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	3 cut(s)	580, 728, 841
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	4 cut(s)	279, 457, 1064, 1234
Bsp119I	TTCGAA	1 cut(s)	1091
Bsp13I	TCCGGA	1 cut(s)	1075
Bsp1407I	TGTACA	1 cut(s)	997
Bsp143I	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
BspANI	GGCC	4 cut(s)	279, 457, 1064, 1234
BspCNI	CTCAG	6 cut(s)	25, 238, 517, 627, 922, 1301
BspDI	ATCGAT	1 cut(s)	516
BspEI	TCCGGA	1 cut(s)	1075
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	316, 1215
BspMAI	CTGCAG	1 cut(s)	1209
BspPI	GGATC	3 cut(s)	286, 456, 938
BspT104I	TTCGAA	1 cut(s)	1091
BspT107I	GGYRCC	1 cut(s)	1213
BsrDI	GCAATG	1 cut(s)	1230
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	4 cut(s)	77, 493, 529, 1151
Bst6I	CTCTTC	1 cut(s)	817
BstAPI	GCANNNNNTGC	2 cut(s)	129, 1213
BstAUI	TGTACA	1 cut(s)	997
BstBI	TTCGAA	1 cut(s)	1091
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	7 cut(s)	12, 246, 504, 614, 930, 1283, 1288
BstENI	CCTNNNNNAGG	1 cut(s)	1246
BstF5I	GGATG	2 cut(s)	483, 648
BstFNI	CGCG	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	7 cut(s)	294, 327, 451, 469, 516, 677, 946
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
BstMWI	GCNNNNNNNGC	7 cut(s)	129, 229, 232, 235, 238, 696, 1213
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	49, 744
BstSFI	CTRYAG	1 cut(s)	1205
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	107, 709
Bsu15I	ATCGAT	1 cut(s)	516
Bsu36I	CCTNAGG	2 cut(s)	246, 504
BsuRI	GGCC	4 cut(s)	279, 457, 1064, 1234
BsuTUI	ATCGAT	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	483, 648
BtsIMutI	CAGTG	3 cut(s)	489, 1023, 1156
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	315, 455
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	481, 846, 998, 1106
CviAII	CATG	4 cut(s)	452, 638, 666, 1055
CviQI	GTAC	4 cut(s)	481, 846, 998, 1106
DdeI	CTNAG	7 cut(s)	12, 246, 504, 614, 930, 1283, 1288
DpnI	GATC	7 cut(s)	293, 326, 450, 468, 515, 676, 945
DpnII	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
DraIII	CACNNNGTG	1 cut(s)	493
EaeI	YGGCCR	2 cut(s)	277, 1062
Eam1104I	CTCTTC	1 cut(s)	817
EarI	CTCTTC	1 cut(s)	817
EciI	GGCGGA	3 cut(s)	397, 443, 983
Eco147I	AGGCCT	1 cut(s)	1234
Eco47I	GGWCC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	1008
Eco81I	CCTNAGG	2 cut(s)	246, 504
EcoNI	CCTNNNNNAGG	1 cut(s)	1246
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	4 cut(s)	455, 641, 669, 1058
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 423, 455
FaqI	GGGAC	3 cut(s)	580, 728, 841
FatI	CATG	4 cut(s)	451, 637, 665, 1054
FauI	CCCGC	1 cut(s)	414
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
FokI	GGATG	2 cut(s)	470, 635
Fsp4HI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
FspBI	CTAG	2 cut(s)	261, 831
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
HaeIII	GGCC	4 cut(s)	279, 457, 1064, 1234
HapII	CCGG	2 cut(s)	746, 1076
HhaI	GCGC	1 cut(s)	704
Hin1II	CATG	4 cut(s)	455, 641, 669, 1058
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	1253
HinfI	GANTC	9 cut(s)	113, 257, 412, 518, 610, 749, 1028, 1117, 1279
HpaII	CCGG	2 cut(s)	746, 1076
HphI	GGTGA	3 cut(s)	65, 170, 461
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	6 cut(s)	15, 256, 291, 708, 943, 1140
Hpy188III	TCNNGA	5 cut(s)	200, 261, 440, 1044, 1076
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	6 cut(s)	70, 390, 806, 879, 1269, 1304
HpyCH4III	ACNGT	4 cut(s)	77, 493, 529, 1151
HpyCH4V	TGCA	5 cut(s)	123, 359, 869, 1154, 1207
HpyF10VI	GCNNNNNNNGC	7 cut(s)	129, 229, 232, 235, 238, 696, 1213
HpyF3I	CTNAG	7 cut(s)	12, 246, 504, 614, 930, 1283, 1288
Hsp92II	CATG	4 cut(s)	455, 641, 669, 1058
HspAI	GCGC	1 cut(s)	702
Kpn2I	TCCGGA	1 cut(s)	1075
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
LmnI	GCTCC	2 cut(s)	27, 709
Lsp1109I	GCAGC	2 cut(s)	107, 709
LweI	GCATC	2 cut(s)	260, 295
MaeI	CTAG	2 cut(s)	261, 831
MaeIII	GTNAC	2 cut(s)	77, 982
MalI	GATC	7 cut(s)	293, 326, 450, 468, 515, 676, 945
MboI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
MboII	GAAGA	6 cut(s)	164, 443, 614, 834, 1001, 1179
MlsI	TGGCCA	2 cut(s)	279, 1064
MluCI	AATT	8 cut(s)	146, 360, 685, 796, 871, 916, 1093, 1100
MluNI	TGGCCA	2 cut(s)	279, 1064
MlyI	GAGTC	2 cut(s)	619, 1273
MmeI	TCCRAC	1 cut(s)	820
Mox20I	TGGCCA	2 cut(s)	279, 1064
MroI	TCCGGA	1 cut(s)	1075
MroXI	GAANNNNTTC	3 cut(s)	435, 1186, 1256
MscI	TGGCCA	2 cut(s)	279, 1064
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	788
Msp20I	TGGCCA	2 cut(s)	279, 1064
MspI	CCGG	2 cut(s)	746, 1076
MspR9I	CCNGG	2 cut(s)	51, 746
Mva1269I	GAATGC	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	7 cut(s)	129, 229, 232, 235, 238, 696, 1213
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
NlaIII	CATG	4 cut(s)	455, 641, 669, 1058
NlaIV	GGNNCC	2 cut(s)	316, 1215
NmuCI	GTSAC	2 cut(s)	77, 982
NspV	TTCGAA	1 cut(s)	1091
PceI	AGGCCT	1 cut(s)	1234
PctI	GAATGC	1 cut(s)	783
PdmI	GAANNNNTTC	3 cut(s)	435, 1186, 1256
PfeI	GAWTC	7 cut(s)	113, 257, 412, 518, 749, 1028, 1117
PflMI	CCANNNNNTGG	2 cut(s)	493, 1176
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	9 cut(s)	122, 225, 228, 231, 234, 237, 240, 701, 724
PleI	GAGTC	2 cut(s)	618, 1273
PpsI	GAGTC	2 cut(s)	618, 1273
PpuMI	RGGWCCY	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	316, 1215
PspPI	GGNCC	2 cut(s)	315, 455
PspPPI	RGGWCCY	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	1209
RsaI	GTAC	4 cut(s)	482, 847, 999, 1107
RsaNI	GTAC	4 cut(s)	481, 846, 998, 1106
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
Sau3AI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
Sau96I	GGNCC	2 cut(s)	315, 455
ScaI	AGTACT	1 cut(s)	1107
SchI	GAGTC	2 cut(s)	619, 1273
ScrFI	CCNGG	2 cut(s)	51, 746
SfaNI	GCATC	2 cut(s)	260, 295
SfcI	CTRYAG	1 cut(s)	1205
SfuI	TTCGAA	1 cut(s)	1091
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
SpeI	ACTAGT	1 cut(s)	830
Sse9I	AATT	8 cut(s)	146, 360, 685, 796, 871, 916, 1093, 1100
SseBI	AGGCCT	1 cut(s)	1234
SspMI	CTAG	2 cut(s)	261, 831
StuI	AGGCCT	1 cut(s)	1234
StyD4I	CCNGG	2 cut(s)	49, 744
TaaI	ACNGT	4 cut(s)	77, 493, 529, 1151
TaqI	TCGA	5 cut(s)	377, 516, 752, 1091, 1265
TasI	AATT	8 cut(s)	146, 360, 685, 796, 871, 916, 1093, 1100
TatI	WGTACW	2 cut(s)	997, 1105
TauI	GCSGC	7 cut(s)	226, 229, 232, 235, 238, 241, 702
TfiI	GAWTC	7 cut(s)	113, 257, 412, 518, 749, 1028, 1117
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	496, 1023, 1156
TseFI	GTSAC	2 cut(s)	77, 982
TseI	GCWGC	2 cut(s)	120, 722
Tsp45I	GTSAC	2 cut(s)	77, 982
TspDTI	ATGAA	2 cut(s)	126, 1241
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	3 cut(s)	496, 1023, 1156
Van91I	CCANNNNNTGG	2 cut(s)	493, 1176
VpaK11BI	GGWCC	1 cut(s)	315
XagI	CCTNNNNNAGG	1 cut(s)	1246
XapI	RAATTY	4 cut(s)	146, 796, 871, 1093
XbaI	TCTAGA	1 cut(s)	260
XmnI	GAANNNNTTC	3 cut(s)	435, 1186, 1256
XspI	CTAG	2 cut(s)	261, 831
ZrmI	AGTACT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.