Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001474.1

Orthogroup ID

OG0006284

Physical Location & Seq

Genomic Coordinates Reverse (-)

21354 .. 24942

Gene Structure 3589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001474.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

atggcaagagtttgttggccatactttgatcccgagtatgagaacctgagcacaagaatcaatcccccgagggtctctgtggacaactctagctgcagtgactgtaccctagtcaaggttgatagtgtcaataagccaggaattctgcttgaagttgtgcaagtactgacagaccttgacctcataatcgctaaagcctatatctcctctgatggcggatggttcatggatgtgtttcacgtcactgatcaacaaggaaaacagattacagacagaaaaaccattgaccacatcgagaaggctttaggaccaaagggccacatcacagaagtagtgaagacttggccaggaaaaagggttggagtgcattctgtaggtgatcacacagccattgaactaatcggaagagaccgcccaggtctcttatctgagatctccgctgtccttgccgacctccactttaacgtagttgctgctgaagtatggacacacaacagaagaatagcctgtgttctttatgtcaatgatgctacatgccaacctgtggacaatccatccagattatctaccatcgaagagagactcaagaacatcttacgtgggtgcgaggatgatgacaatgtaggtcacaccagtttctctatggggttcactcatgtggatagacggctccaccagatgttgtttgctgatagggattatgagggccgtggtggattatcaaatgaggttgattttcctgcctgcttccaacccaagatcaccattgagcgttgggaagaaaagggatactcggtggtcagtgtccggtgcaaagatcgtgcaaaacttatgtttgacattgtatgcacactcactgatatggaatatgttgttttccatgccaccatctcgtctgatggtccatatgcatcacaggagtattatattcgtcacatggatggttgcacccttgatactgaaggcgagaaggaaagggtagtcaaatgtattgacgctgcaattcggagaagagtaagcgagggtcttaggctagagctatgtgcaaaggatagggtaggcttgctatcagaagtaacaaggatcctgagggagaatggattatcagttataagagcaggtgtctcaaccattggggaacaaggaatgaatgtcttttatgttagagattcttcagggaattcagtggacatacagaaaatcgaagctcttcgtaaagaaattggacacaaaatgatgttcaacgtgaagaaaatttcaacgagttccaaggcacctgaaactagtggatgggccaagacaagcttcttcttcggcaacttgttagagaggttcttggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016597 GO:0031406 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

447

Amino Acids

50.24

Weight (kDa)

6.04

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76990 AT1G76990 AT1G76990 AT1G76990 AT1G76990
fragaria_vesca	FvH4_2g15200
malus_domestica	MD05G1010200.v1.1 MD05G1010300.v1.1 MD10G1008800.v1.1
prunus_persica	Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1
pyrus_communis	pycom05g00530 pycom10g00530
rosa_chinensis	RchiOBHm_Chr6g0277951
rosa_laevigata	RLG00000013254
rosa_multiflora	Rmu_sc0001474.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047070 Rroxscaffold_7G00190650
rosa_rugosa	Rorug06G0113000
rosa_samantha	Rh6CG230000 Rh6DG220700 Rh6DG220800
rosa_wichuraiana	Rw5G024040 Rw6G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1112
AarI	CACCTGC	1 cut(s)	1109
Acc36I	ACCTGC	1 cut(s)	1109
AccB1I	GGYRCC	1 cut(s)	1273
AccB7I	CCANNNNNTGG	1 cut(s)	544
AciI	CCGC	3 cut(s)	216, 412, 438
AclWI	GGATC	3 cut(s)	23, 1078, 1091
AcoI	YGGCCR	2 cut(s)	17, 344
AcsI	RAATTY	3 cut(s)	141, 1180, 1254
AcuI	CTGAAG	3 cut(s)	498, 981, 1158
AfaI	GTAC	2 cut(s)	106, 165
AfiI	CCNNNNNNNGG	2 cut(s)	115, 544
AgsI	TTSAA	4 cut(s)	152, 395, 1243, 1260
AhlI	ACTAGT	1 cut(s)	1283
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	136, 346, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	1289, 1321
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	4 cut(s)	93, 1039, 1208, 1305
AluI	AGCT	4 cut(s)	93, 1039, 1208, 1305
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	5 cut(s)	79, 402, 425, 574, 1129
AlwI	GGATC	3 cut(s)	23, 1078, 1091
AlwNI	CAGNNNCTG	1 cut(s)	102
Ama87I	CYCGRG	2 cut(s)	32, 67
AoxI	GGCC	5 cut(s)	17, 316, 344, 706, 1293
ApeKI	GCWGC	3 cut(s)	93, 473, 998
ApoI	RAATTY	3 cut(s)	141, 1180, 1254
Asp700I	GAANNNNTTC	1 cut(s)	1209
AspS9I	GGNCC	5 cut(s)	308, 316, 706, 902, 1293
AsuHPI	GGTGA	2 cut(s)	389, 754
AvaI	CYCGRG	2 cut(s)	32, 67
AvaII	GGWCC	2 cut(s)	308, 902
AxyI	CCTNAGG	1 cut(s)	1088
BalI	TGGCCA	2 cut(s)	19, 346
BamHI	GGATCC	1 cut(s)	1083
BanI	GGYRCC	1 cut(s)	1273
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	80, 460, 985
BccI	CCATC	8 cut(s)	206, 213, 562, 578, 893, 896, 935, 1284
BceAI	ACGGC	2 cut(s)	683, 693
BciT130I	CCWGG	3 cut(s)	138, 348, 417
BciVI	GTATCC	1 cut(s)	782
BclI	TGATCA	2 cut(s)	247, 379
BcoDI	GTCTC	5 cut(s)	79, 402, 425, 574, 1129
BcuI	ACTAGT	1 cut(s)	1283
BfaI	CTAG	4 cut(s)	90, 110, 1034, 1284
BfmI	CTRYAG	2 cut(s)	94, 372
BfuAI	ACCTGC	1 cut(s)	1109
BfuI	GTATCC	1 cut(s)	782
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	3 cut(s)	94, 474, 999
BlsI	GCNGC	3 cut(s)	95, 475, 1000
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	3 cut(s)	138, 348, 417
Bme18I	GGWCC	2 cut(s)	308, 902
BmeT110I	CYCGRG	2 cut(s)	32, 67
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	5 cut(s)	308, 316, 706, 902, 1293
BmiI	GGNNCC	3 cut(s)	671, 1085, 1275
BmrFI	CCNGG	3 cut(s)	138, 348, 417
BmsI	GCATC	2 cut(s)	517, 920
BpiI	GAAGAC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	599
BsaI	GGTCTC	3 cut(s)	79, 402, 425
BsaJI	CCNNGG	4 cut(s)	68, 415, 709, 1269
BsaWI	WCCGGW	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 544
Bse1I	ACTGG	1 cut(s)	633
Bse21I	CCTNAGG	1 cut(s)	1088
BseBI	CCWGG	3 cut(s)	138, 348, 417
BseDI	CCNNGG	4 cut(s)	68, 415, 709, 1269
BseGI	GGATG	6 cut(s)	224, 235, 554, 616, 946, 1295
BseLI	CCNNNNNNNGG	2 cut(s)	115, 544
BseMII	CTCAG	3 cut(s)	38, 420, 1079
BseNI	ACTGG	1 cut(s)	633
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	3 cut(s)	80, 460, 985
BshFI	GGCC	5 cut(s)	19, 318, 346, 708, 1295
BshNI	GGYRCC	1 cut(s)	1273
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	2 cut(s)	32, 67
BsiSI	CCGG	1 cut(s)	808
BslI	CCNNNNNNNGG	2 cut(s)	115, 544
BsmAI	GTCTC	5 cut(s)	79, 402, 425, 574, 1129
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	5 cut(s)	19, 318, 346, 708, 1295
Bso31I	GGTCTC	3 cut(s)	79, 402, 425
BsoBI	CYCGRG	2 cut(s)	32, 67
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
BspACI	CCGC	3 cut(s)	216, 412, 438
BspANI	GGCC	5 cut(s)	19, 318, 346, 708, 1295
BspCNI	CTCAG	3 cut(s)	39, 421, 1080
BspLI	GGNNCC	3 cut(s)	671, 1085, 1275
BspMAI	CTGCAG	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	1109
BspPI	GGATC	3 cut(s)	23, 1078, 1091
BspQI	GCTCTTC	1 cut(s)	1215
BspT107I	GGYRCC	1 cut(s)	1273
BspTNI	GGTCTC	3 cut(s)	79, 402, 425
BsrI	ACTGG	1 cut(s)	633
BssECI	CCNNGG	4 cut(s)	68, 415, 709, 1269
BssMI	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
BssT1I	CCWWGG	1 cut(s)	1269
Bst2UI	CCWGG	3 cut(s)	138, 348, 417
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	4 cut(s)	400, 570, 1006, 1215
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	745, 1064
BstDEI	CTNAG	4 cut(s)	47, 429, 1028, 1088
BstDSI	CCRYGG	1 cut(s)	709
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	6 cut(s)	224, 235, 554, 616, 946, 1295
BstKTI	GATC	7 cut(s)	31, 250, 382, 435, 762, 820, 1086
BstMAI	GTCTC	5 cut(s)	79, 402, 425, 574, 1129
BstMBI	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	3 cut(s)	138, 348, 417
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	3 cut(s)	136, 346, 415
BstSFI	CTRYAG	2 cut(s)	94, 372
BstV1I	GCAGC	3 cut(s)	80, 460, 985
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	432, 1083
BstYI	RGATCY	2 cut(s)	432, 1083
Bsu36I	CCTNAGG	1 cut(s)	1088
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	5 cut(s)	19, 318, 346, 708, 1295
BtgI	CCRYGG	1 cut(s)	709
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	6 cut(s)	224, 235, 554, 616, 946, 1295
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	5 cut(s)	103, 243, 808, 855, 1191
BveI	ACCTGC	1 cut(s)	1109
Cac8I	GCNNGC	2 cut(s)	745, 1064
CaiI	CAGNNNCTG	1 cut(s)	102
Cfr13I	GGNCC	5 cut(s)	308, 316, 706, 902, 1293
CseI	GACGC	1 cut(s)	1004
Csp6I	GTAC	2 cut(s)	105, 164
CviAII	CATG	5 cut(s)	226, 534, 656, 881, 937
CviQI	GTAC	2 cut(s)	105, 164
DdeI	CTNAG	4 cut(s)	47, 429, 1028, 1088
DpnI	GATC	7 cut(s)	30, 249, 381, 434, 761, 819, 1085
DpnII	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
EaeI	YGGCCR	2 cut(s)	17, 344
Eam1104I	CTCTTC	4 cut(s)	400, 570, 1006, 1215
EarI	CTCTTC	4 cut(s)	400, 570, 1006, 1215
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	1269
Eco31I	GGTCTC	3 cut(s)	79, 402, 425
Eco47I	GGWCC	2 cut(s)	308, 902
Eco57I	CTGAAG	3 cut(s)	498, 981, 1158
Eco81I	CCTNAGG	1 cut(s)	1088
Eco88I	CYCGRG	2 cut(s)	32, 67
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRI	GAATTC	2 cut(s)	141, 1180
EcoRII	CCWGG	3 cut(s)	136, 346, 415
EcoT14I	CCWWGG	1 cut(s)	1269
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	1 cut(s)	1269
FaeI	CATG	5 cut(s)	229, 537, 659, 884, 940
FalI	AAGNNNNNCTT	4 cut(s)	578, 610, 1289, 1321
FatI	CATG	5 cut(s)	225, 533, 655, 880, 936
FauNDI	CATATG	1 cut(s)	907
FbaI	TGATCA	2 cut(s)	247, 379
Fnu4HI	GCNGC	3 cut(s)	94, 474, 999
FokI	GGATG	6 cut(s)	231, 242, 541, 623, 953, 1302
Fsp4HI	GCNGC	3 cut(s)	94, 474, 999
FspBI	CTAG	4 cut(s)	90, 110, 1034, 1284
GluI	GCNGC	3 cut(s)	94, 474, 999
HaeIII	GGCC	5 cut(s)	19, 318, 346, 708, 1295
HapII	CCGG	1 cut(s)	808
HgaI	GACGC	1 cut(s)	1004
Hin1II	CATG	5 cut(s)	229, 537, 659, 884, 940
HindIII	AAGCTT	1 cut(s)	1303
HinfI	GANTC	3 cut(s)	57, 582, 1169
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	389, 754
Hpy166II	GTNNAC	4 cut(s)	82, 547, 651, 1189
Hpy188I	TCNGA	6 cut(s)	211, 404, 430, 898, 1008, 1072
Hpy188III	TCNNGA	5 cut(s)	32, 295, 558, 586, 1087
Hpy8I	GTNNAC	4 cut(s)	82, 547, 651, 1189
HpyAV	CCTTC	3 cut(s)	292, 956, 964
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	4 cut(s)	240, 465, 598, 1245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	4 cut(s)	47, 429, 1028, 1088
HpySE526I	ACGT	4 cut(s)	240, 465, 598, 1245
Hsp92II	CATG	5 cut(s)	229, 537, 659, 884, 940
Ksp22I	TGATCA	2 cut(s)	247, 379
Kzo9I	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
LguI	GCTCTTC	1 cut(s)	1215
LmnI	GCTCC	1 cut(s)	675
Lsp1109I	GCAGC	3 cut(s)	80, 460, 985
LweI	GCATC	2 cut(s)	517, 920
MaeI	CTAG	4 cut(s)	90, 110, 1034, 1284
MaeII	ACGT	4 cut(s)	240, 465, 598, 1245
MaeIII	GTNAC	5 cut(s)	98, 241, 626, 932, 1075
MalI	GATC	7 cut(s)	30, 249, 381, 434, 761, 819, 1085
MboI	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
MflI	RGATCY	2 cut(s)	432, 1083
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	2 cut(s)	19, 346
MluCI	AATT	5 cut(s)	141, 1002, 1180, 1221, 1254
MluNI	TGGCCA	2 cut(s)	19, 346
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	2 cut(s)	340, 775
Mox20I	TGGCCA	2 cut(s)	19, 346
Mph1103I	ATGCAT	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	1209
MscI	TGGCCA	2 cut(s)	19, 346
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	4 cut(s)	230, 656, 860, 939
Msp20I	TGGCCA	2 cut(s)	19, 346
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	3 cut(s)	138, 348, 417
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	3 cut(s)	138, 348, 417
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
NlaIII	CATG	5 cut(s)	229, 537, 659, 884, 940
NlaIV	GGNNCC	3 cut(s)	671, 1085, 1275
NmuCI	GTSAC	4 cut(s)	98, 241, 626, 932
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	537
OliI	CACNNNNGTG	1 cut(s)	656
PaqCI	CACCTGC	1 cut(s)	1109
PciSI	GCTCTTC	1 cut(s)	1215
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	1209
PfeI	GAWTC	2 cut(s)	57, 1169
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	95, 475, 1000
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	1112
Psp6I	CCWGG	3 cut(s)	136, 346, 415
PspGI	CCWGG	3 cut(s)	136, 346, 415
PspN4I	GGNNCC	3 cut(s)	671, 1085, 1275
PspPI	GGNCC	5 cut(s)	308, 316, 706, 902, 1293
PstI	CTGCAG	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	432, 1083
RsaI	GTAC	2 cut(s)	106, 165
RsaNI	GTAC	2 cut(s)	105, 164
RseI	CAYNNNNRTG	4 cut(s)	230, 656, 860, 939
SapI	GCTCTTC	1 cut(s)	1215
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	94, 474, 999
Sau3AI	GATC	7 cut(s)	28, 247, 379, 432, 759, 817, 1083
Sau96I	GGNCC	5 cut(s)	308, 316, 706, 902, 1293
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	1 cut(s)	576
ScrFI	CCNGG	3 cut(s)	138, 348, 417
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	517, 920
SfcI	CTRYAG	2 cut(s)	94, 372
SinI	GGWCC	2 cut(s)	308, 902
SmiMI	CAYNNNNRTG	4 cut(s)	230, 656, 860, 939
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SpeI	ACTAGT	1 cut(s)	1283
Sse9I	AATT	5 cut(s)	141, 1002, 1180, 1221, 1254
SsiI	CCGC	3 cut(s)	216, 412, 438
SspMI	CTAG	4 cut(s)	90, 110, 1034, 1284
StyD4I	CCNGG	3 cut(s)	136, 346, 415
StyI	CCWWGG	1 cut(s)	1269
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	4 cut(s)	243, 468, 601, 1248
TaqI	TCGA	3 cut(s)	294, 573, 1203
TasI	AATT	5 cut(s)	141, 1002, 1180, 1221, 1254
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	57, 1169
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	5 cut(s)	103, 250, 808, 862, 1191
TseFI	GTSAC	4 cut(s)	98, 241, 626, 932
TseI	GCWGC	3 cut(s)	93, 473, 998
Tsp45I	GTSAC	4 cut(s)	98, 241, 626, 932
TspDTI	ATGAA	2 cut(s)	214, 1163
TspRI	CASTG	5 cut(s)	103, 250, 808, 862, 1191
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	308, 902
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	3 cut(s)	141, 1180, 1254
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	1209
XspI	CTAG	4 cut(s)	90, 110, 1034, 1284
ZrmI	AGTACT	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.