Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006284

Physical Location & Seq

Genomic Coordinates Reverse (-)

38618505 .. 38631436

Gene Structure 12932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAAGAGTTTGTTGGCCATACTTTGATCCCGAGTATGAGAACCTGAGCACAAGAATCAATCCCCCGAGGGTCTCTGTGGACAACTCTAGCTGCAGTGACTGTACCCTAGTCAAGGTTGATAGTGTCAATAAGCCAGGAATTCTGCTTGAAGTTGTGCAAGTACTGACAGACCTTGACCTCATAATCGCTAAAGCCTATATCTCCTCTGATGGCGGATGGTTCATGGATGTGTTTCACGTCACTGATCAACAAGGAAAACAGATTACAGACAGAAAAACCATTGACCACATCGAGAAGGCTTTAGGACCAAAGGGCCACATCACAGAAGTAGTGAAGACTTGGCCAGGAAAAAGGGTTGGAGTGCATTCTGTAGGTGATCACACAGCCATTGAGCTAATTGGAAGAGACCGCCCAGGTCTCTTATCTGAGATCTCCGCTGTCCTTGCCGACCTCCACTTTAACGTAGTTGCTGCTGAAGTATGGACACACAACAGAAGAATAGCCTGTGTTCTTTATGTCAATGATGCTACATGCCAACCTGTGGACAATCCATCCAGATTATCTACCATCGAAGAGAGACTCAAGAACATCTTACGTGGGTGCGAGGATGATGACAATGTAGGTCACACCAGTTTCTCTATGGGGTTCACTCATGTGGATAGACGGCTCCACCAGATGTTGTTTGCTGATAGGGATTATGAGGGCCGTGGTGGATTATCAAATGAGGTTGATTTTCCTGCCTGCTTCCAACCCAAGATCACCATTGAGCGTTGGGAAGAAAAGGGATACTCGGTGGTCAGTGTCCGGTGCAAAGATCGTGCAAAACTTATGTTTGACATTGTATGCACACTCACTGATATGGAATATGTTGTTTTCCATGCCACCATCTCGTCTGATGGTCCATATGCATCACAGGTGCAGACATTACTGCATTTTGATTTGCATCATCTTCAATCGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016597 GO:0031406 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

322

Amino Acids

36.27

Weight (kDa)

5.58

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT_ACR9_3rd	PF24931	25 - 100	1e-05	ACR9-like, ACT-like domain
ACT	PF01842	37 - 85	8.7e-08	ACT domain
ACT	PF01842	130 - 199	2.7e-10	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76990 AT1G76990 AT1G76990 AT1G76990 AT1G76990
fragaria_vesca	FvH4_2g15200
malus_domestica	MD05G1010200.v1.1 MD05G1010300.v1.1 MD10G1008800.v1.1
prunus_persica	Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1
pyrus_communis	pycom05g00530 pycom10g00530
rosa_chinensis	RchiOBHm_Chr6g0277951
rosa_laevigata	RLG00000013254
rosa_multiflora	Rmu_sc0001474.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047070 Rroxscaffold_7G00190650
rosa_rugosa	Rorug06G0113000
rosa_samantha	Rh6CG230000 Rh6DG220700 Rh6DG220800
rosa_wichuraiana	Rw5G024040 Rw6G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	544
AciI	CCGC	3 cut(s)	216, 412, 438
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	2 cut(s)	17, 344
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	106, 165
AfiI	CCNNNNNNNGG	2 cut(s)	115, 544
AgsI	TTSAA	2 cut(s)	152, 956
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	136, 346, 415
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	2 cut(s)	93, 397
AluI	AGCT	2 cut(s)	93, 397
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	4 cut(s)	79, 402, 425, 574
AlwI	GGATC	1 cut(s)	23
AlwNI	CAGNNNCTG	1 cut(s)	102
Ama87I	CYCGRG	2 cut(s)	32, 67
AoxI	GGCC	4 cut(s)	17, 316, 344, 706
ApeKI	GCWGC	2 cut(s)	93, 473
ApoI	RAATTY	1 cut(s)	141
AspS9I	GGNCC	4 cut(s)	308, 316, 706, 902
AsuHPI	GGTGA	2 cut(s)	389, 754
AvaI	CYCGRG	2 cut(s)	32, 67
AvaII	GGWCC	2 cut(s)	308, 902
BalI	TGGCCA	2 cut(s)	19, 346
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	80, 460
BccI	CCATC	6 cut(s)	206, 213, 562, 578, 893, 896
BceAI	ACGGC	2 cut(s)	683, 693
BciT130I	CCWGG	3 cut(s)	138, 348, 417
BciVI	GTATCC	1 cut(s)	782
BclI	TGATCA	2 cut(s)	247, 379
BcoDI	GTCTC	4 cut(s)	79, 402, 425, 574
BfaI	CTAG	2 cut(s)	90, 110
BfmI	CTRYAG	2 cut(s)	94, 372
BfuI	GTATCC	1 cut(s)	782
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	2 cut(s)	94, 474
BlsI	GCNGC	2 cut(s)	95, 475
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	3 cut(s)	138, 348, 417
Bme18I	GGWCC	2 cut(s)	308, 902
BmeT110I	CYCGRG	2 cut(s)	32, 67
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	4 cut(s)	308, 316, 706, 902
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	3 cut(s)	138, 348, 417
BmsI	GCATC	3 cut(s)	517, 920, 955
BpiI	GAAGAC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	945
BsaI	GGTCTC	3 cut(s)	79, 402, 425
BsaJI	CCNNGG	3 cut(s)	68, 415, 709
BsaWI	WCCGGW	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 544
Bse1I	ACTGG	1 cut(s)	633
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	3 cut(s)	138, 348, 417
BseDI	CCNNGG	3 cut(s)	68, 415, 709
BseGI	GGATG	4 cut(s)	224, 235, 554, 616
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	2 cut(s)	115, 544
BseMII	CTCAG	2 cut(s)	38, 420
BseNI	ACTGG	1 cut(s)	633
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	80, 460
BsgI	GTGCAG	1 cut(s)	941
BshFI	GGCC	4 cut(s)	19, 318, 346, 708
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	2 cut(s)	32, 67
BsiSI	CCGG	1 cut(s)	808
BslI	CCNNNNNNNGG	2 cut(s)	115, 544
BsmAI	GTCTC	4 cut(s)	79, 402, 425, 574
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	19, 318, 346, 708
Bso31I	GGTCTC	3 cut(s)	79, 402, 425
BsoBI	CYCGRG	2 cut(s)	32, 67
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
BspACI	CCGC	3 cut(s)	216, 412, 438
BspANI	GGCC	4 cut(s)	19, 318, 346, 708
BspCNI	CTCAG	2 cut(s)	39, 421
BspLI	GGNNCC	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	1 cut(s)	23
BspTNI	GGTCTC	3 cut(s)	79, 402, 425
BsrI	ACTGG	1 cut(s)	633
BssECI	CCNNGG	3 cut(s)	68, 415, 709
BssMI	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
Bst2UI	CCWGG	3 cut(s)	138, 348, 417
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	2 cut(s)	400, 570
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	745
BstDEI	CTNAG	2 cut(s)	47, 429
BstDSI	CCRYGG	1 cut(s)	709
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	4 cut(s)	224, 235, 554, 616
BstKTI	GATC	6 cut(s)	31, 250, 382, 435, 762, 820
BstMAI	GTCTC	4 cut(s)	79, 402, 425, 574
BstMBI	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	3 cut(s)	138, 348, 417
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	3 cut(s)	136, 346, 415
BstSFI	CTRYAG	2 cut(s)	94, 372
BstV1I	GCAGC	2 cut(s)	80, 460
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	4 cut(s)	19, 318, 346, 708
BtgI	CCRYGG	1 cut(s)	709
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	224, 235, 554, 616
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	4 cut(s)	103, 243, 808, 855
Cac8I	GCNNGC	1 cut(s)	745
CaiI	CAGNNNCTG	1 cut(s)	102
Cfr13I	GGNCC	4 cut(s)	308, 316, 706, 902
Csp6I	GTAC	2 cut(s)	105, 164
CviAII	CATG	4 cut(s)	226, 534, 656, 881
CviQI	GTAC	2 cut(s)	105, 164
DdeI	CTNAG	2 cut(s)	47, 429
DpnI	GATC	6 cut(s)	30, 249, 381, 434, 761, 819
DpnII	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
EaeI	YGGCCR	2 cut(s)	17, 344
Eam1104I	CTCTTC	2 cut(s)	400, 570
EarI	CTCTTC	2 cut(s)	400, 570
EciI	GGCGGA	1 cut(s)	231
Eco31I	GGTCTC	3 cut(s)	79, 402, 425
Eco47I	GGWCC	2 cut(s)	308, 902
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	2 cut(s)	32, 67
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	3 cut(s)	136, 346, 415
EcoT22I	ATGCAT	1 cut(s)	913
FaeI	CATG	4 cut(s)	229, 537, 659, 884
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FatI	CATG	4 cut(s)	225, 533, 655, 880
FauNDI	CATATG	1 cut(s)	907
FbaI	TGATCA	2 cut(s)	247, 379
Fnu4HI	GCNGC	2 cut(s)	94, 474
FokI	GGATG	4 cut(s)	231, 242, 541, 623
Fsp4HI	GCNGC	2 cut(s)	94, 474
FspBI	CTAG	2 cut(s)	90, 110
GluI	GCNGC	2 cut(s)	94, 474
HaeIII	GGCC	4 cut(s)	19, 318, 346, 708
HapII	CCGG	1 cut(s)	808
Hin1II	CATG	4 cut(s)	229, 537, 659, 884
HinfI	GANTC	2 cut(s)	57, 582
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	389, 754
Hpy166II	GTNNAC	3 cut(s)	82, 547, 651
Hpy188I	TCNGA	3 cut(s)	211, 430, 898
Hpy188III	TCNNGA	4 cut(s)	32, 295, 558, 586
Hpy8I	GTNNAC	3 cut(s)	82, 547, 651
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	3 cut(s)	240, 465, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	2 cut(s)	47, 429
HpySE526I	ACGT	3 cut(s)	240, 465, 598
Hsp92II	CATG	4 cut(s)	229, 537, 659, 884
Ksp22I	TGATCA	2 cut(s)	247, 379
Kzo9I	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
LmnI	GCTCC	1 cut(s)	675
Lsp1109I	GCAGC	2 cut(s)	80, 460
LweI	GCATC	3 cut(s)	517, 920, 955
MaeI	CTAG	2 cut(s)	90, 110
MaeII	ACGT	3 cut(s)	240, 465, 598
MaeIII	GTNAC	3 cut(s)	98, 241, 626
MalI	GATC	6 cut(s)	30, 249, 381, 434, 761, 819
MboI	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
MboII	GAAGA	6 cut(s)	349, 417, 510, 587, 791, 944
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	2 cut(s)	19, 346
MluCI	AATT	2 cut(s)	141, 399
MluNI	TGGCCA	2 cut(s)	19, 346
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	2 cut(s)	340, 775
MnlI	CCTC	7 cut(s)	63, 191, 217, 464, 601, 697, 721
Mox20I	TGGCCA	2 cut(s)	19, 346
Mph1103I	ATGCAT	1 cut(s)	913
MscI	TGGCCA	2 cut(s)	19, 346
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	3 cut(s)	230, 656, 860
Msp20I	TGGCCA	2 cut(s)	19, 346
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	3 cut(s)	138, 348, 417
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	3 cut(s)	138, 348, 417
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
NlaIII	CATG	4 cut(s)	229, 537, 659, 884
NlaIV	GGNNCC	1 cut(s)	671
NmuCI	GTSAC	3 cut(s)	98, 241, 626
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	537
OliI	CACNNNNGTG	1 cut(s)	656
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	2 cut(s)	95, 475
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	136, 346, 415
PspGI	CCWGG	3 cut(s)	136, 346, 415
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	4 cut(s)	308, 316, 706, 902
PstI	CTGCAG	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	432
RsaI	GTAC	2 cut(s)	106, 165
RsaNI	GTAC	2 cut(s)	105, 164
RseI	CAYNNNNRTG	3 cut(s)	230, 656, 860
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	94, 474
Sau3AI	GATC	6 cut(s)	28, 247, 379, 432, 759, 817
Sau96I	GGNCC	4 cut(s)	308, 316, 706, 902
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	1 cut(s)	576
ScrFI	CCNGG	3 cut(s)	138, 348, 417
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	3 cut(s)	517, 920, 955
SfcI	CTRYAG	2 cut(s)	94, 372
SinI	GGWCC	2 cut(s)	308, 902
SmiMI	CAYNNNNRTG	3 cut(s)	230, 656, 860
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	141, 399
SsiI	CCGC	3 cut(s)	216, 412, 438
SspMI	CTAG	2 cut(s)	90, 110
StyD4I	CCNGG	3 cut(s)	136, 346, 415
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	3 cut(s)	243, 468, 601
TaqI	TCGA	2 cut(s)	294, 573
TasI	AATT	2 cut(s)	141, 399
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	4 cut(s)	103, 250, 808, 862
TseFI	GTSAC	3 cut(s)	98, 241, 626
TseI	GCWGC	2 cut(s)	93, 473
Tsp45I	GTSAC	3 cut(s)	98, 241, 626
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	4 cut(s)	103, 250, 808, 862
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	308, 902
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XspI	CTAG	2 cut(s)	90, 110
ZrmI	AGTACT	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.