Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006284

Physical Location & Seq

Genomic Coordinates Reverse (-)

34131236 .. 34132876

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAAAGATTGTGTTCTCTTCTTTTTTTCTTGTTCAACTTTGCATGGGAAAGCCAGAAGCTTCATATGATTATTAGACTTGTTCTTGCAGAGTTGCGATTGATAATGATTCTTATTTTTCTTCAATTTCTATTCAAGTTGACACTTGACAGTGTCAACAAACATGGAATTCTCCTAGATGTTGTCCAAATGCTTGCAGATGTGAACCTTGTAATAACGAAAGCTTATGTCTCATCTGATGATTGCAAGAATTATATGGAACAATGGCCGTATTCTCTTCAAAACTTTGAAACTTTGAAACCACAATTAGCTGATATATCGGGAGGATTATCCGCTAGAAGAATTAGAGCTGTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

119

Amino Acids

13.84

Weight (kDa)

9.03

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76990 AT1G76990 AT1G76990 AT1G76990 AT1G76990
fragaria_vesca	FvH4_2g15200
malus_domestica	MD05G1010200.v1.1 MD05G1010300.v1.1 MD10G1008800.v1.1
prunus_persica	Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1
pyrus_communis	pycom05g00530 pycom10g00530
rosa_chinensis	RchiOBHm_Chr6g0277951
rosa_laevigata	RLG00000013254
rosa_multiflora	Rmu_sc0001474.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047070 Rroxscaffold_7G00190650
rosa_rugosa	Rorug06G0113000
rosa_samantha	Rh6CG230000 Rh6DG220700 Rh6DG220800
rosa_wichuraiana	Rw5G024040 Rw6G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	168
AgsI	TTSAA	6 cut(s)	37, 125, 136, 281, 290, 298
AluBI	AGCT	4 cut(s)	61, 224, 311, 350
AluI	AGCT	4 cut(s)	61, 224, 311, 350
Alw26I	GTCTC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	176, 336
BshFI	GGCC	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	2 cut(s)	24, 282
BstC8I	GCNNGC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	195
CviAII	CATG	2 cut(s)	45, 164
CviJI	RGCY	6 cut(s)	54, 61, 224, 268, 311, 350
CviKI_1	RGCY	6 cut(s)	54, 61, 224, 268, 311, 350
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	24, 282
EarI	CTCTTC	2 cut(s)	24, 282
EcoRI	GAATTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	48, 167
FaiI	YATR	9 cut(s)	46, 66, 68, 165, 228, 255, 257, 317, 358
FatI	CATG	2 cut(s)	44, 163
FauNDI	CATATG	1 cut(s)	66
FspBI	CTAG	2 cut(s)	176, 336
HaeIII	GGCC	1 cut(s)	268
Hin1II	CATG	2 cut(s)	48, 167
HincII	GTYRAC	2 cut(s)	141, 157
HindII	GTYRAC	2 cut(s)	141, 157
HindIII	AAGCTT	2 cut(s)	59, 222
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	141, 157, 205
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	321
Hpy8I	GTNNAC	3 cut(s)	141, 157, 205
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	44, 89, 197, 246
Hsp92II	CATG	2 cut(s)	48, 167
LpnPI	CCDG	1 cut(s)	68
MaeI	CTAG	2 cut(s)	176, 336
MaeIII	GTNAC	1 cut(s)	352
MboII	GAAGA	4 cut(s)	11, 113, 269, 351
MluCI	AATT	5 cut(s)	125, 168, 250, 305, 342
MnlI	CCTC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	66
NlaIII	CATG	2 cut(s)	48, 167
PfeI	GAWTC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	152
SetI	ASST	5 cut(s)	63, 210, 226, 313, 352
Sse9I	AATT	5 cut(s)	125, 168, 250, 305, 342
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	176, 336
TaaI	ACNGT	1 cut(s)	152
TasI	AATT	5 cut(s)	125, 168, 250, 305, 342
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 53
TspRI	CASTG	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	168
XspI	CTAG	2 cut(s)	176, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.