Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006284

Physical Location & Seq

Genomic Coordinates Reverse (-)

66593169 .. 66597888

Gene Structure 4720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCTCAACCAACAGCTGCAAAATGCAAAAGATTGAAATTTTTCAGAAAGGGACCTCAAGACAATCCTAATAGCACTGGACTTTGGCATAATGATCAACTTTCCCGTTATGATTTTGGCATTTTTGTTGACAGTGTCAACAAACATGGAATTCTCCTAGATGTTGTCCAAGTGCTTGCAGATGTGAACCTTGTAATAACAAAAGCTTATGTCTCATCTGATGGAGTATGGTTCATGATGATGGTAGACAGTGTTGGTGAATCAGAGACAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

92

Amino Acids

10.35

Weight (kDa)

6.71

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	41 - 90	1e-07	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76990 AT1G76990 AT1G76990 AT1G76990 AT1G76990
fragaria_vesca	FvH4_2g15200
malus_domestica	MD05G1010200.v1.1 MD05G1010300.v1.1 MD10G1008800.v1.1
prunus_persica	Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1
pyrus_communis	pycom05g00530 pycom10g00530
rosa_chinensis	RchiOBHm_Chr6g0277951
rosa_laevigata	RLG00000013254
rosa_multiflora	Rmu_sc0001474.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047070 Rroxscaffold_7G00190650
rosa_rugosa	Rorug06G0113000
rosa_samantha	Rh6CG230000 Rh6DG220700 Rh6DG220800
rosa_wichuraiana	Rw5G024040 Rw6G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	38, 150
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	2 cut(s)	17, 206
AluI	AGCT	2 cut(s)	17, 206
Alw26I	GTCTC	3 cut(s)	9, 217, 260
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	2 cut(s)	38, 150
Asp700I	GAANNNNTTC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	215, 235
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	9, 217, 260
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	66
BsmAI	GTCTC	3 cut(s)	9, 217, 260
BsmFI	GGGAC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	134, 251
BstC8I	GCNNGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	3 cut(s)	9, 217, 260
BstMBI	GATC	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	4
BtsIMutI	CAGTG	3 cut(s)	75, 139, 256
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	3 cut(s)	146, 235, 276
CviJI	RGCY	2 cut(s)	17, 206
CviKI_1	RGCY	2 cut(s)	17, 206
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	149, 238, 279
FaiI	YATR	7 cut(s)	90, 111, 147, 210, 229, 236, 277
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	3 cut(s)	145, 234, 275
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	149, 238, 279
HincII	GTYRAC	2 cut(s)	130, 139
HindII	GTYRAC	2 cut(s)	130, 139
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	4 cut(s)	130, 139, 187, 247
Hpy188I	TCNGA	3 cut(s)	47, 220, 265
Hpy188III	TCNNGA	2 cut(s)	59, 235
Hpy8I	GTNNAC	4 cut(s)	130, 139, 187, 247
HpyCH4III	ACNGT	2 cut(s)	134, 251
HpyCH4V	TGCA	3 cut(s)	20, 27, 179
Hsp92II	CATG	3 cut(s)	149, 238, 279
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	158
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MluCI	AATT	2 cut(s)	38, 150
MnlI	CCTC	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	17
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	3 cut(s)	149, 238, 279
NlaIV	GGNNCC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	260
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	53
SetI	ASST	4 cut(s)	19, 58, 192, 208
SgeI	CNNG	9 cut(s)	71, 90, 117, 158, 170, 182, 188, 203, 247
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	38, 150
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	134, 251
TasI	AATT	2 cut(s)	38, 150
TfiI	GAWTC	1 cut(s)	260
TscAI	CASTG	3 cut(s)	82, 139, 256
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	223
TspRI	CASTG	3 cut(s)	82, 139, 256
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	38, 150
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.