Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006284

Physical Location & Seq

Genomic Coordinates Reverse (-)

39366739 .. 39368195

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG220700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATGGTTGCACCCTTGATACTGAAGGCGAGAAGGAAAGGGTAGTCAAATGTATTGACGCTGCAATTCGGAGAAGAGTAAGCGAGGGTCTTAGGCTAGAGCTATGTGCAAAGGATAGGGTAGGCTTGCTATCAGAAGTAACAAGGATCCTGAGGGAGAATGGATTATCAGTTATAAGAGCAGGTGTCTCAACCATTGGGGAACAAGGAATGAATGTCTTTTATGTTAGAGATTCTTCAGGGAATTCAGTGGACATACAGAAAATCGAAGCTCTTCGTAAAGAAATTGGACACAAAATGATGTTCAACGTGAAGAAAATTTCAACGAGTTCCAAGGCACCTGAGACTAGTGGATGGGCCAAGACAAGCTTCTTCTTCGGCAACTTGTTAGAGAGGTTCTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016597 GO:0031406 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

135

Amino Acids

15.01

Weight (kDa)

9.12

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	33 - 93	1.1e-10	ACT domain
ACR10_N	PF24914	38 - 94	4.7e-06	ACT domain-containing protein ACR10, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76990 AT1G76990 AT1G76990 AT1G76990 AT1G76990
fragaria_vesca	FvH4_2g15200
malus_domestica	MD05G1010200.v1.1 MD05G1010300.v1.1 MD10G1008800.v1.1
prunus_persica	Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1 Prupe.8G012600_v2.0.a1
pyrus_communis	pycom05g00530 pycom10g00530
rosa_chinensis	RchiOBHm_Chr6g0277951
rosa_laevigata	RLG00000013254
rosa_multiflora	Rmu_sc0001474.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047070 Rroxscaffold_7G00190650
rosa_rugosa	Rorug06G0113000
rosa_samantha	Rh6CG230000 Rh6DG220700 Rh6DG220800
rosa_wichuraiana	Rw5G024040 Rw6G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AarI	CACCTGC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	142, 155
AcsI	RAATTY	2 cut(s)	244, 318
AcuI	CTGAAG	2 cut(s)	45, 222
AgsI	TTSAA	2 cut(s)	307, 324
AhlI	ACTAGT	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	3 cut(s)	103, 272, 369
AluI	AGCT	3 cut(s)	103, 272, 369
Alw26I	GTCTC	2 cut(s)	193, 338
AlwI	GGATC	2 cut(s)	142, 155
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	244, 318
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	357
AxyI	CCTNAGG	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	193, 338
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	2 cut(s)	98, 348
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	2 cut(s)	149, 339
BsaJI	CCNNGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	10, 359
BseMII	CTCAG	2 cut(s)	143, 333
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	193, 338
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	144, 334
BspLI	GGNNCC	2 cut(s)	149, 339
BspMI	ACCTGC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	142, 155
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	333
Bst6I	CTCTTC	2 cut(s)	70, 279
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	92, 152, 342
BstF5I	GGATG	2 cut(s)	10, 359
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	2 cut(s)	193, 338
BstMBI	GATC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	10, 359
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	1 cut(s)	68
CviJI	RGCY	7 cut(s)	97, 103, 126, 272, 359, 369, 404
CviKI_1	RGCY	7 cut(s)	97, 103, 126, 272, 359, 369, 404
DdeI	CTNAG	3 cut(s)	92, 152, 342
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	70, 279
EarI	CTCTTC	2 cut(s)	70, 279
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	45, 222
Eco81I	CCTNAGG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaiI	YATR	4 cut(s)	106, 176, 225, 257
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	17, 366
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	98, 348
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	359
HgaI	GACGC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	72, 136
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	20, 28
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	12, 65, 110
HpyF3I	CTNAG	3 cut(s)	92, 152, 342
HpySE526I	ACGT	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	279
LpnPI	CCDG	4 cut(s)	164, 168, 225, 354
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	98, 348
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	6 cut(s)	87, 228, 266, 325, 364, 367
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	4 cut(s)	66, 244, 285, 318
MnlI	CCTC	3 cut(s)	79, 147, 387
MroXI	GAANNNNTTC	1 cut(s)	273
NdeII	GATC	1 cut(s)	147
NlaIV	GGNNCC	2 cut(s)	149, 339
PaqCI	CACCTGC	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	149, 339
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	279
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	357
SetI	ASST	7 cut(s)	105, 187, 274, 312, 343, 371, 398
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	4 cut(s)	66, 244, 285, 318
SspMI	CTAG	2 cut(s)	98, 348
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	267
TasI	AATT	4 cut(s)	66, 244, 285, 318
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	2 cut(s)	244, 318
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	98, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.