Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001659.1

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Reverse (-)

212693 .. 214735

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

atggttcccgaatcaaaaacagagcaactagagcagaaaatccatcgctctaatcatgtagatatgctcgaactcaactctcaactgaagcagctagtcaaaattggtaatgtcaaagatgcccggaagatgttcgatgaaatgccaaagagagatgaggtttcatggaccaatatgatttcaggctatgttggagtctctgattcctctgcagcattggctctgttctcaaacatgtgggtgcagccaggtctctgcatggacccctttcttctcagcattgcgctcaaggcttgtggacttggtatgaacttgtcttatggggaagttgtacatgggtactcggtgaaatcgggttttgtgaactcagtctttgtgggaagtgctcttcttgacatgtatatgaaggttggtgagattggcaagggttgtagagttttcgacacaatgccgctgagaaatgtggtgtcgtggactaccattatcactggtctcgttcgcgcaggtcataatgtggaggggttgcgatattttgctgaaatgtggaggtgtagggtgcaatgtgatgcgtatgcgtttgctatctcgttgaaggcgtgtgctgatttaggtgctttgaagtgtgggagagaaattcacacgcaaacgatgaagaaagggtttgatgagaactctttcgtagccaactctcttgctaccatgtacaataaatgtggaaaattggactatggggtgcagttgttcgcgaacatgaggacgcaggatgttgtttcgtggacatcaatcattacatcgtatttttggacgggtcaagaggaccatgcaatcaaagcatttatgcgaatgcaggaatctggtgtgcatcctaatgaatacacttttgcagccgttatctccggatgtgccaatcttgctagagttgaatggggtgaacaattgcatgccaacgtgttacgcttgggtcttgcggattctttgtcagtgggaaattcagttatagccatgtatgctaaatgtgggcgtttggcttcagcttctgttgtgtttcatgagatgggcagaaaagatattgtttcatggaccactgtaattgcagggtattctcaagcaggttatggggaagaagctttcaagtatttgtcgtggatgagaagggaagaaccaaaaccaaacgagtatgcttttgcgagtgtattaagtgtttgtggaagcatggcaatgcttgagcaaggcaagcaattgcatgctcatgtcttaacggtaggtctagattctgaagctatggtacaaagtgccttagtcaatctgtactcgaaatgtggaagtatacaagaggctgcgaaaatctttgatgtgacaaaagcaaaagatgatgatgttatttcatggacgtccatgattaatggatatgctcaacatgggtactaccaaaaagccattgatctgtttgagaagcttcctacggttggtctgaaaccggactcagtgaccttcattggtgttcttgctgcgtgtagccatgctggactagttgatcttggtttccactacttcaattcaatgagcaatgaatttaagattagtccttcaaaagaacactacggctgcatgatcgatctcctttgtcgagctggacggttaagtgaagcagagcacatgatcaaaagtatgccagttcaacaggatgatgttgtctggtctactctacttacagcatgtcggctccatggtgatgttgactgcggaagacacgctgcagaggagattcttaaattaaatcctaattgtgcagtgactcacataacgctagctggtatttatgctgccaaaggaatgtggagggaagccgcagaggtaaggagaatgatgagatcaaagggcgtaattaaggaacccggatggtctgggatagaggtcaagaatgggatttctgtgtttgttgctggagataggtctcatccacaaggtgatgagatatatagtgtgctggaattactagattcaaaggcagagatttctactcgggaaacagttcttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

680

Amino Acids

75.19

Weight (kDa)

6.41

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	153 - 201	1.8e-07	PPR repeat family
PPR_2	PF13041	255 - 303	5.1e-12	PPR repeat family
PPR_3	PF13812	255 - 301	1.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	355 - 402	2.3e-09	PPR repeat family
PPR_2	PF13041	459 - 506	3.1e-10	PPR repeat family
PPR	PF01535	461 - 487	3.6e-07	PPR repeat
E_motif	PF20431	576 - 638	3.5e-10	E motif
Eplus_motif	PF20430	646 - 664	5.8e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1394
Acc36I	ACCTGC	2 cut(s)	494, 1100
AccI	GTMKAC	2 cut(s)	1327, 1700
AccII	CGCG	2 cut(s)	501, 746
AccIII	TCCGGA	1 cut(s)	896
AciI	CCGC	4 cut(s)	452, 968, 1743, 1848
AcsI	RAATTY	3 cut(s)	633, 988, 1571
AcuI	CTGAAG	3 cut(s)	107, 1014, 1296
AcyI	GRCGYC	1 cut(s)	1391
AdeI	CACNNNGTG	1 cut(s)	1967
AfaI	GTAC	6 cut(s)	333, 341, 704, 1287, 1310, 1424
AfiI	CCNNNNNNNGG	1 cut(s)	1466
AflIII	ACRYGT	3 cut(s)	234, 396, 948
AgsI	TTSAA	9 cut(s)	592, 619, 923, 1132, 1555, 1560, 1590, 1679, 2004
AhlI	ACTAGT	1 cut(s)	1528
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	7 cut(s)	94, 1034, 1127, 1280, 1456, 1631, 1811
AluI	AGCT	7 cut(s)	94, 1034, 1127, 1280, 1456, 1631, 1811
Alw21I	GWGCWC	2 cut(s)	388, 1656
Alw26I	GTCTC	4 cut(s)	202, 257, 497, 1959
AlwNI	CAGNNNCTG	1 cut(s)	1037
Ama87I	CYCGRG	1 cut(s)	2022
Aor13HI	TCCGGA	1 cut(s)	896
ApeKI	GCWGC	9 cut(s)	91, 212, 244, 884, 1337, 1508, 1605, 1754, 1823
ApoI	RAATTY	3 cut(s)	633, 988, 1571
AseI	ATTAAT	1 cut(s)	1401
Asp700I	GAANNNNTTC	3 cut(s)	131, 674, 2031
AspLEI	GCGC	2 cut(s)	286, 503
AspS9I	GGNCC	4 cut(s)	168, 262, 817, 1080
AsuC2I	CCSGG	2 cut(s)	124, 1896
AsuHPI	GGTGA	5 cut(s)	358, 425, 941, 1742, 1979
AsuNHI	GCTAGC	1 cut(s)	1807
AvaI	CYCGRG	1 cut(s)	2022
AvaII	GGWCC	4 cut(s)	168, 262, 817, 1080
BarI	GAAGNNNNNNTAC	2 cut(s)	1269, 1301
BbsI	GAAGAC	1 cut(s)	1753
Bbv12I	GWGCWC	2 cut(s)	388, 1656
BbvI	GCAGC	9 cut(s)	103, 224, 256, 896, 1324, 1495, 1592, 1741, 1810
BccI	CCATC	3 cut(s)	51, 1048, 1893
BceAI	ACGGC	2 cut(s)	872, 1618
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	1659
BcnI	CCSGG	2 cut(s)	124, 1896
BcoDI	GTCTC	4 cut(s)	202, 257, 497, 1959
BcuI	ACTAGT	1 cut(s)	1528
BfaI	CTAG	7 cut(s)	29, 95, 915, 1268, 1529, 1808, 1997
BfmI	CTRYAG	2 cut(s)	210, 1755
BfuAI	ACCTGC	2 cut(s)	494, 1100
Bme1390I	CCNGG	3 cut(s)	124, 249, 1896
Bme18I	GGWCC	4 cut(s)	168, 262, 817, 1080
BmeT110I	CYCGRG	1 cut(s)	2022
BmgT120I	GGNCC	4 cut(s)	168, 262, 817, 1080
BmiI	GGNNCC	4 cut(s)	6, 264, 1724, 1893
BmrFI	CCNGG	3 cut(s)	124, 249, 1896
BmsI	GCATC	3 cut(s)	109, 556, 871
BmtI	GCTAGC	1 cut(s)	1811
BpiI	GAAGAC	1 cut(s)	1753
BpmI	CTGGAG	1 cut(s)	1965
BpuEI	CTTGAG	3 cut(s)	272, 1089, 1244
BpuMI	CCSGG	2 cut(s)	124, 1896
Bsa29I	ATCGAT	1 cut(s)	1614
BsaHI	GRCGYC	1 cut(s)	1391
BsaI	GGTCTC	3 cut(s)	257, 497, 1959
BsaJI	CCNNGG	1 cut(s)	1726
BsaWI	WCCGGW	2 cut(s)	896, 1477
Bsc4I	CCNNNNNNNGG	1 cut(s)	1466
Bse1I	ACTGG	2 cut(s)	493, 1673
Bse3DI	GCAATG	4 cut(s)	279, 566, 1224, 1573
BseAI	TCCGGA	1 cut(s)	896
BseBI	CCWGG	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	1614
BseDI	CCNNGG	1 cut(s)	1726
BseGI	GGATG	7 cut(s)	769, 862, 905, 1152, 1690, 1904, 1957
BseLI	CCNNNNNNNGG	1 cut(s)	1466
BseMI	GCAATG	4 cut(s)	279, 566, 1224, 1573
BseMII	CTCAG	4 cut(s)	289, 381, 446, 1497
BseNI	ACTGG	2 cut(s)	493, 1673
BseRI	GAGGAG	1 cut(s)	1775
BseXI	GCAGC	9 cut(s)	103, 224, 256, 896, 1324, 1495, 1592, 1741, 1810
BsgI	GTGCAG	3 cut(s)	263, 755, 1809
Bsh1236I	CGCG	2 cut(s)	501, 746
BshVI	ATCGAT	1 cut(s)	1614
BsiHKAI	GWGCWC	2 cut(s)	388, 1656
BsiHKCI	CYCGRG	1 cut(s)	2022
BsiSI	CCGG	4 cut(s)	124, 897, 1478, 1896
BslI	CCNNNNNNNGG	1 cut(s)	1466
BsmAI	GTCTC	4 cut(s)	202, 257, 497, 1959
BsmI	GAATGC	1 cut(s)	849
Bso31I	GGTCTC	3 cut(s)	257, 497, 1959
BsoBI	CYCGRG	1 cut(s)	2022
Bsp1286I	GDGCHC	2 cut(s)	388, 1656
Bsp13I	TCCGGA	1 cut(s)	896
Bsp1407I	TGTACA	2 cut(s)	331, 702
Bsp143I	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
Bsp19I	CCATGG	1 cut(s)	1726
Bsp68I	TCGCGA	1 cut(s)	746
BspACI	CCGC	4 cut(s)	452, 968, 1743, 1848
BspCNI	CTCAG	4 cut(s)	288, 380, 447, 1496
BspDI	ATCGAT	1 cut(s)	1614
BspEI	TCCGGA	1 cut(s)	896
BspFNI	CGCG	2 cut(s)	501, 746
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	4 cut(s)	6, 264, 1724, 1893
BspMAI	CTGCAG	2 cut(s)	214, 1759
BspMI	ACCTGC	2 cut(s)	494, 1100
BspOI	GCTAGC	1 cut(s)	1811
BspQI	GCTCTTC	1 cut(s)	393
BspTNI	GGTCTC	3 cut(s)	257, 497, 1959
BsrDI	GCAATG	4 cut(s)	279, 566, 1224, 1573
BsrGI	TGTACA	2 cut(s)	331, 702
BsrI	ACTGG	2 cut(s)	493, 1673
BssECI	CCNNGG	1 cut(s)	1726
BssMI	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
BssNAI	GTATAC	1 cut(s)	1328
BssNI	GRCGYC	1 cut(s)	1391
BssT1I	CCWWGG	1 cut(s)	1726
Bst1107I	GTATAC	1 cut(s)	1328
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	5 cut(s)	1087, 1261, 1465, 1638, 2032
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	1391
BstAUI	TGTACA	2 cut(s)	331, 702
BstC8I	GCNNGC	4 cut(s)	942, 1235, 1245, 1809
BstDEI	CTNAG	5 cut(s)	275, 367, 455, 1297, 1483
BstDSI	CCRYGG	1 cut(s)	1726
BstF5I	GGATG	7 cut(s)	769, 862, 905, 1152, 1690, 1904, 1957
BstFNI	CGCG	2 cut(s)	501, 746
BstHHI	GCGC	2 cut(s)	286, 503
BstKTI	GATC	6 cut(s)	1444, 1537, 1614, 1618, 1662, 1874
BstMAI	GTCTC	4 cut(s)	202, 257, 497, 1959
BstMBI	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 218, 290, 830, 911, 1007, 1234
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	5 cut(s)	238, 400, 944, 1247, 1719
BstSCI	CCNGG	3 cut(s)	122, 247, 1894
BstSFI	CTRYAG	2 cut(s)	210, 1755
BstUI	CGCG	2 cut(s)	501, 746
BstV1I	GCAGC	9 cut(s)	103, 224, 256, 896, 1324, 1495, 1592, 1741, 1810
BstV2I	GAAGAC	1 cut(s)	1753
BstZ17I	GTATAC	1 cut(s)	1328
Bsu15I	ATCGAT	1 cut(s)	1614
BsuTUI	ATCGAT	1 cut(s)	1614
BtgI	CCRYGG	1 cut(s)	1726
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	7 cut(s)	769, 862, 905, 1152, 1690, 1904, 1957
BtsI	GCAGTG	1 cut(s)	1797
BtsIMutI	CAGTG	5 cut(s)	486, 987, 1083, 1491, 1797
BtuMI	TCGCGA	1 cut(s)	746
BveI	ACCTGC	2 cut(s)	494, 1100
Cac8I	GCNNGC	4 cut(s)	942, 1235, 1245, 1809
CaiI	CAGNNNCTG	1 cut(s)	1037
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	2 cut(s)	286, 503
Cfr13I	GGNCC	4 cut(s)	168, 262, 817, 1080
ClaI	ATCGAT	1 cut(s)	1614
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	6 cut(s)	332, 340, 703, 1286, 1309, 1423
CspCI	CAANNNNNGTGG	6 cut(s)	277, 312, 694, 729, 1072, 1107
CviQI	GTAC	6 cut(s)	332, 340, 703, 1286, 1309, 1423
DdeI	CTNAG	5 cut(s)	275, 367, 455, 1297, 1483
DpnI	GATC	6 cut(s)	1443, 1536, 1613, 1617, 1661, 1873
DpnII	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
DraIII	CACNNNGTG	1 cut(s)	1967
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	1726
Eco31I	GGTCTC	3 cut(s)	257, 497, 1959
Eco47I	GGWCC	4 cut(s)	168, 262, 817, 1080
Eco57I	CTGAAG	3 cut(s)	107, 1014, 1296
Eco88I	CYCGRG	1 cut(s)	2022
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	1726
ErhI	CCWWGG	1 cut(s)	1726
FbaI	TGATCA	1 cut(s)	1659
FblI	GTMKAC	2 cut(s)	1327, 1700
FokI	GGATG	7 cut(s)	776, 849, 912, 1159, 1697, 1911, 1944
FspBI	CTAG	7 cut(s)	29, 95, 915, 1268, 1529, 1808, 1997
GlaI	GCGC	2 cut(s)	285, 502
GsuI	CTGGAG	1 cut(s)	1965
HapII	CCGG	4 cut(s)	124, 897, 1478, 1896
HgaI	GACGC	1 cut(s)	766
HhaI	GCGC	2 cut(s)	286, 503
Hin1I	GRCGYC	1 cut(s)	1391
Hin6I	GCGC	2 cut(s)	284, 501
HinP1I	GCGC	2 cut(s)	284, 501
HincII	GTYRAC	1 cut(s)	1738
HindII	GTYRAC	1 cut(s)	1738
HindIII	AAGCTT	2 cut(s)	1125, 1454
HpaII	CCGG	4 cut(s)	124, 897, 1478, 1896
HphI	GGTGA	5 cut(s)	358, 425, 941, 1742, 1979
Hpy166II	GTNNAC	8 cut(s)	299, 364, 474, 777, 932, 1328, 1701, 1738
Hpy188I	TCNGA	3 cut(s)	202, 1276, 1473
Hpy188III	TCNNGA	9 cut(s)	8, 392, 745, 812, 897, 1049, 1268, 1918, 2024
Hpy8I	GTNNAC	8 cut(s)	299, 364, 474, 777, 932, 1328, 1701, 1738
HpyAV	CCTTC	5 cut(s)	400, 586, 1146, 1501, 1596
HpyCH4III	ACNGT	5 cut(s)	1087, 1261, 1465, 1638, 2032
HpyCH4IV	ACGT	2 cut(s)	948, 1391
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 218, 290, 830, 911, 1007, 1234
HpyF3I	CTNAG	5 cut(s)	275, 367, 455, 1297, 1483
HpySE526I	ACGT	2 cut(s)	948, 1391
Hsp92I	GRCGYC	1 cut(s)	1391
HspAI	GCGC	2 cut(s)	284, 501
Kpn2I	TCCGGA	1 cut(s)	896
Ksp22I	TGATCA	1 cut(s)	1659
Kzo9I	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	1728
Lsp1109I	GCAGC	9 cut(s)	103, 224, 256, 896, 1324, 1495, 1592, 1741, 1810
LweI	GCATC	3 cut(s)	109, 556, 871
MaeI	CTAG	7 cut(s)	29, 95, 915, 1268, 1529, 1808, 1997
MaeII	ACGT	2 cut(s)	948, 1391
MaeIII	GTNAC	4 cut(s)	951, 1354, 1486, 1792
MalI	GATC	6 cut(s)	1443, 1536, 1613, 1617, 1661, 1873
MboI	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
MboII	GAAGA	8 cut(s)	139, 263, 380, 664, 1133, 1169, 1758, 2027
MfeI	CAATTG	2 cut(s)	935, 1238
MhlI	GDGCHC	2 cut(s)	388, 1656
MlyI	GAGTC	3 cut(s)	204, 1475, 1789
MmeI	TCCRAC	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	896
MroXI	GAANNNNTTC	3 cut(s)	131, 674, 2031
MseI	TTAA	8 cut(s)	1196, 1256, 1401, 1575, 1640, 1770, 1775, 1887
MslI	CAYNNNNRTG	6 cut(s)	239, 401, 867, 1217, 1248, 1731
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	4 cut(s)	124, 897, 1478, 1896
MspR9I	CCNGG	3 cut(s)	124, 249, 1896
MunI	CAATTG	2 cut(s)	935, 1238
Mva1269I	GAATGC	1 cut(s)	849
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	2 cut(s)	501, 746
MwoI	GCNNNNNNNGC	7 cut(s)	31, 218, 290, 830, 911, 1007, 1234
NciI	CCSGG	2 cut(s)	124, 1896
NcoI	CCATGG	1 cut(s)	1726
NdeII	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
NheI	GCTAGC	1 cut(s)	1807
NlaIV	GGNNCC	4 cut(s)	6, 264, 1724, 1893
NmuCI	GTSAC	3 cut(s)	1354, 1486, 1792
NruI	TCGCGA	1 cut(s)	746
NspI	RCATGY	5 cut(s)	238, 400, 944, 1247, 1719
PaeI	GCATGC	2 cut(s)	944, 1247
PagI	TCATGA	1 cut(s)	1048
PciI	ACATGT	2 cut(s)	234, 396
PciSI	GCTCTTC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	593
PctI	GAATGC	1 cut(s)	849
PdmI	GAANNNNTTC	3 cut(s)	131, 674, 2031
PfeI	GAWTC	7 cut(s)	11, 203, 851, 971, 1271, 1765, 2000
PleI	GAGTC	3 cut(s)	203, 1475, 1789
PpsI	GAGTC	3 cut(s)	203, 1475, 1789
PscI	ACATGT	2 cut(s)	234, 396
PshBI	ATTAAT	1 cut(s)	1401
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	4 cut(s)	6, 264, 1724, 1893
PspPI	GGNCC	4 cut(s)	168, 262, 817, 1080
PstI	CTGCAG	2 cut(s)	214, 1759
PstNI	CAGNNNCTG	1 cut(s)	1037
RruI	TCGCGA	1 cut(s)	746
RsaI	GTAC	6 cut(s)	333, 341, 704, 1287, 1310, 1424
RsaNI	GTAC	6 cut(s)	332, 340, 703, 1286, 1309, 1423
RseI	CAYNNNNRTG	6 cut(s)	239, 401, 867, 1217, 1248, 1731
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	8 cut(s)	1196, 1256, 1401, 1575, 1640, 1770, 1775, 1887
Sau3AI	GATC	6 cut(s)	1441, 1534, 1611, 1615, 1659, 1871
Sau96I	GGNCC	4 cut(s)	168, 262, 817, 1080
SchI	GAGTC	3 cut(s)	204, 1475, 1789
ScrFI	CCNGG	3 cut(s)	124, 249, 1896
SduI	GDGCHC	2 cut(s)	388, 1656
SfaNI	GCATC	3 cut(s)	109, 556, 871
SfcI	CTRYAG	2 cut(s)	210, 1755
SinI	GGWCC	4 cut(s)	168, 262, 817, 1080
SmiMI	CAYNNNNRTG	6 cut(s)	239, 401, 867, 1217, 1248, 1731
SmlI	CTYRAG	3 cut(s)	287, 1104, 1223
SmoI	CTYRAG	3 cut(s)	287, 1104, 1223
SpeI	ACTAGT	1 cut(s)	1528
SphI	GCATGC	2 cut(s)	944, 1247
SsiI	CCGC	4 cut(s)	452, 968, 1743, 1848
SspMI	CTAG	7 cut(s)	29, 95, 915, 1268, 1529, 1808, 1997
StyD4I	CCNGG	3 cut(s)	122, 247, 1894
StyI	CCWWGG	1 cut(s)	1726
TaaI	ACNGT	5 cut(s)	1087, 1261, 1465, 1638, 2032
TaiI	ACGT	2 cut(s)	951, 1394
TaqI	TCGA	6 cut(s)	69, 135, 441, 1313, 1614, 1627
TatI	WGTACW	3 cut(s)	331, 702, 1308
TauI	GCSGC	2 cut(s)	454, 1850
TfiI	GAWTC	7 cut(s)	11, 203, 851, 971, 1271, 1765, 2000
Tru1I	TTAA	8 cut(s)	1196, 1256, 1401, 1575, 1640, 1770, 1775, 1887
Tru9I	TTAA	8 cut(s)	1196, 1256, 1401, 1575, 1640, 1770, 1775, 1887
TscAI	CASTG	5 cut(s)	493, 987, 1090, 1491, 1797
TseFI	GTSAC	3 cut(s)	1354, 1486, 1792
TseI	GCWGC	9 cut(s)	91, 212, 244, 884, 1337, 1508, 1605, 1754, 1823
Tsp45I	GTSAC	3 cut(s)	1354, 1486, 1792
TspRI	CASTG	5 cut(s)	493, 987, 1090, 1491, 1797
VpaK11BI	GGWCC	4 cut(s)	168, 262, 817, 1080
VspI	ATTAAT	1 cut(s)	1401
XapI	RAATTY	3 cut(s)	633, 988, 1571
XbaI	TCTAGA	1 cut(s)	1267
XceI	RCATGY	5 cut(s)	238, 400, 944, 1247, 1719
XmiI	GTMKAC	2 cut(s)	1327, 1700
XmnI	GAANNNNTTC	3 cut(s)	131, 674, 2031
XspI	CTAG	7 cut(s)	29, 95, 915, 1268, 1529, 1808, 1997
ZraI	GACGTC	1 cut(s)	1392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.