Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 982

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

ggcttacttcagatgtacccgcaagtatgatcaaggctgccaagcaaccaaacaagtccaacaagtccaagacaccccaaaagtgtacaaaaccacctacattggaaaccacacgtgcagaaacatgatcaggggtccacagatgatcatgggctccaccgatcctcctactggggattctcatgctcctcctcgatctactgttagctcggaatctggatcgaccccaatttgcaataagaaagaacatcacggtgttcatggtggtcatctccctagctcgtcgtctatgattcccttcgttccggtgaagaaagaagagtgcaaggaggggacgacgtcgagtggtctgacggacaatcttaacgatacaagtgatgtgtggccggagttcaaggatgatcatcatcatgattttgggttccctgagactactgtaatgtctaatgagaatgcggtttcgaacatgcagttcttggacatggacttggtggtgaagtctattaatttcgagaatgagtttgattttgatgaagctgcatttcctttaggcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

185

Amino Acids

20.56

Weight (kDa)

5.38

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	2 - 39	3.9e-10	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AciI	CCGC	2 cut(s)	20, 456
AclWI	GGATC	2 cut(s)	156, 227
AcoI	YGGCCR	1 cut(s)	384
AcvI	CACGTG	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	2 cut(s)	17, 87
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	3 cut(s)	208, 280, 537
AluI	AGCT	3 cut(s)	208, 280, 537
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	156, 227
AoxI	GGCC	2 cut(s)	384, 551
ApeKI	GCWGC	2 cut(s)	37, 537
AseI	ATTAAT	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	135, 552
AsuHPI	GGTGA	2 cut(s)	320, 506
AsuII	TTCGAA	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	156
BbrPI	CACGTG	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	24, 524
BclI	TGATCA	4 cut(s)	29, 127, 145, 401
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	277, 557
BisI	GCNGC	2 cut(s)	38, 538
BlsI	GCNGC	2 cut(s)	39, 539
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	135, 552
BmiI	GGNNCC	4 cut(s)	136, 155, 423, 554
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
Bpu14I	TTCGAA	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	115
BsaBI	GATNNNNATC	2 cut(s)	403, 406
BsaHI	GRCGYC	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	176
Bse8I	GATNNNNATC	2 cut(s)	403, 406
BseGI	GGATG	1 cut(s)	404
BseJI	GATNNNNATC	2 cut(s)	403, 406
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	178, 181
BseXI	GCAGC	2 cut(s)	24, 524
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	386, 553
BsiSI	CCGG	2 cut(s)	306, 387
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	386, 553
Bsp119I	TTCGAA	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
BspACI	CCGC	2 cut(s)	20, 456
BspANI	GGCC	2 cut(s)	386, 553
BspCNI	CTCAG	1 cut(s)	419
BspHI	TCATGA	1 cut(s)	410
BspLI	GGNNCC	4 cut(s)	136, 155, 423, 554
BspPI	GGATC	2 cut(s)	156, 227
BspT104I	TTCGAA	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
BssNI	GRCGYC	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	203, 255, 437
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	7 cut(s)	32, 130, 148, 164, 198, 222, 404
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
BstNSI	RCATGY	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	24, 524
BsuRI	GGCC	2 cut(s)	386, 553
BtsCI	GGATG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	135, 552
Csp6I	GTAC	2 cut(s)	16, 86
CspCI	CAANNNNNGTGG	2 cut(s)	83, 118
CviAII	CATG	7 cut(s)	125, 149, 183, 261, 411, 467, 482
CviJI	RGCY	8 cut(s)	3, 37, 154, 208, 280, 386, 537, 553
CviKI_1	RGCY	8 cut(s)	3, 37, 154, 208, 280, 386, 537, 553
CviQI	GTAC	2 cut(s)	16, 86
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	7 cut(s)	31, 129, 147, 163, 197, 221, 403
DpnII	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	135
Eco72I	CACGTG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	7 cut(s)	128, 152, 186, 264, 414, 470, 485
FaiI	YATR	9 cut(s)	28, 126, 150, 184, 262, 291, 412, 468, 483
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	7 cut(s)	124, 148, 182, 260, 410, 466, 481
FauI	CCCGC	1 cut(s)	27
FbaI	TGATCA	4 cut(s)	29, 127, 145, 401
Fnu4HI	GCNGC	2 cut(s)	38, 538
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	38, 538
FspBI	CTAG	2 cut(s)	277, 557
GluI	GCNGC	2 cut(s)	38, 538
HaeIII	GGCC	2 cut(s)	386, 553
HapII	CCGG	2 cut(s)	306, 387
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	7 cut(s)	128, 152, 186, 264, 414, 470, 485
HinfI	GANTC	3 cut(s)	177, 213, 293
HpaII	CCGG	2 cut(s)	306, 387
HphI	GGTGA	2 cut(s)	320, 506
Hpy166II	GTNNAC	2 cut(s)	86, 138
Hpy188I	TCNGA	3 cut(s)	12, 212, 352
Hpy188III	TCNNGA	3 cut(s)	217, 411, 512
Hpy8I	GTNNAC	2 cut(s)	86, 138
Hpy99I	CGWCG	3 cut(s)	287, 341, 344
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	3 cut(s)	203, 255, 437
HpyCH4IV	ACGT	2 cut(s)	114, 339
HpyCH4V	TGCA	5 cut(s)	118, 235, 325, 470, 540
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	2 cut(s)	114, 339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	7 cut(s)	128, 152, 186, 264, 414, 470, 485
Ksp22I	TGATCA	4 cut(s)	29, 127, 145, 401
Kzo9I	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
LmnI	GCTCC	2 cut(s)	159, 191
LpnPI	CCDG	6 cut(s)	116, 157, 202, 319, 400, 439
Lsp1109I	GCAGC	2 cut(s)	24, 524
MaeI	CTAG	2 cut(s)	277, 557
MaeII	ACGT	2 cut(s)	114, 339
MalI	GATC	7 cut(s)	31, 129, 147, 163, 197, 221, 403
MboI	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
MboII	GAAGA	2 cut(s)	323, 330
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	229, 506
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	175, 199, 202, 323
MseI	TTAA	2 cut(s)	364, 505
MslI	CAYNNNNRTG	2 cut(s)	253, 409
MspI	CCGG	2 cut(s)	306, 387
Mva1269I	GAATGC	1 cut(s)	458
NdeII	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
NlaIII	CATG	7 cut(s)	128, 152, 186, 264, 414, 470, 485
NlaIV	GGNNCC	4 cut(s)	136, 155, 423, 554
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	462
PagI	TCATGA	1 cut(s)	410
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	177, 213, 293
PflFI	GACNNNGTC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	39, 539
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	136, 155, 423, 554
PspPI	GGNCC	2 cut(s)	135, 552
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	2 cut(s)	17, 87
RsaNI	GTAC	2 cut(s)	16, 86
RseI	CAYNNNNRTG	2 cut(s)	253, 409
SaqAI	TTAA	2 cut(s)	364, 505
SatI	GCNGC	2 cut(s)	38, 538
Sau3AI	GATC	7 cut(s)	29, 127, 145, 161, 195, 219, 401
Sau96I	GGNCC	2 cut(s)	135, 552
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	99, 117, 210, 282, 342, 539
SfuI	TTCGAA	1 cut(s)	462
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	253, 409
Sse9I	AATT	2 cut(s)	229, 506
SsiI	CCGC	2 cut(s)	20, 456
SspMI	CTAG	2 cut(s)	277, 557
TaaI	ACNGT	3 cut(s)	203, 255, 437
TaiI	ACGT	2 cut(s)	117, 342
TaqI	TCGA	5 cut(s)	194, 222, 342, 462, 511
TasI	AATT	2 cut(s)	229, 506
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	3 cut(s)	177, 213, 293
Tru1I	TTAA	2 cut(s)	364, 505
Tru9I	TTAA	2 cut(s)	364, 505
TseI	GCWGC	2 cut(s)	37, 537
TspDTI	ATGAA	2 cut(s)	249, 547
TspGWI	ACGGA	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	135
VspI	ATTAAT	1 cut(s)	505
XceI	RCATGY	1 cut(s)	470
XspI	CTAG	2 cut(s)	277, 557
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.