Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001904.1

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Forward (+)

40186 .. 41156

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgtctctcatctcccgcctccgccaatccttcctcctcctccacacgcgccgcctctccaccaccaccgaaccctcctccaaagacaaaatccgctccctcatcgcccatctcaaaaccgaaaaagacccccacaaaatcgtctccctctgccaatccgcctccctcacccccgactccaacctccaccgcatcgccctcacacgcgccgtcacctccctccgcgactccccccacccaaacctcatcccccaattcctcgaccacttcctcctctcccgccccgacctccaaacgcaccgcatcgcctcccacgtcatcctcctctacggccgggcccgcatgcccgaccacgccgtccgcaccttcgagctctgccatggactcggtatcccccaggacgtgaagctcctcaatgccctgttattatcttgcgttttcgccgaggattacaaagaggtcactcggatttaccgcgactttccgaagatttatgggatcgagccaaatctggacacttacaattgcgcactcaaatccctttcgaaatccggttccaccagcactgcctactctgttttggcggagatggagaggaggaggatcgagccggatgggaacacattcgggcacttgctttcggggttttacagcgaggagaggtttgaggatgtgggaaatgtgatcaatttgatggagaatttgggttccaatcggggcttaatacctacaacgttaggattcggagtctttgaggggaatttggagcaagggaagaagatgtttgagaagatggtggagaaggggtttaagccggattgcaactgctattatactctagtgtactacttgtgcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

286

Amino Acids

32.47

Weight (kDa)

8.61

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	169 - 216	1.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
Acc16I	TGCGCA	1 cut(s)	529
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	4 cut(s)	49, 207, 225, 477
AclI	AACGTT	1 cut(s)	734
AclWI	GGATC	2 cut(s)	506, 611
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	700, 760
AfaI	GTAC	1 cut(s)	845
AjiI	CACGTC	2 cut(s)	316, 403
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	2 cut(s)	373, 409
AluI	AGCT	2 cut(s)	373, 409
Alw21I	GWGCWC	2 cut(s)	375, 857
Alw26I	GTCTC	2 cut(s)	9, 148
Alw44I	GTGCAC	1 cut(s)	853
AlwI	GGATC	2 cut(s)	506, 611
AoxI	GGCC	2 cut(s)	331, 336
ApaI	GGGCCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	853
ApoI	RAATTY	2 cut(s)	700, 760
Asp700I	GAANNNNTTC	1 cut(s)	623
AspLEI	GCGC	3 cut(s)	51, 209, 530
AspS9I	GGNCC	2 cut(s)	336, 337
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	160, 205
AsuII	TTCGAA	1 cut(s)	545
BaeGI	GKGCMC	3 cut(s)	340, 633, 857
BanII	GRGCYC	2 cut(s)	340, 375
Bbv12I	GWGCWC	2 cut(s)	375, 857
BccI	CCATC	5 cut(s)	117, 583, 608, 688, 787
BceAI	ACGGC	3 cut(s)	194, 341, 346
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	401
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	9, 148
BfaI	CTAG	1 cut(s)	839
BfuI	GTATCC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	335, 398
BmgBI	CACGTC	2 cut(s)	316, 403
BmgT120I	GGNCC	2 cut(s)	336, 337
BmiI	GGNNCC	3 cut(s)	338, 556, 709
BmrFI	CCNGG	2 cut(s)	335, 398
BmsI	GCATC	2 cut(s)	201, 312
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	379, 396, 444
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	379, 396, 444
BseGI	GGATG	4 cut(s)	246, 318, 619, 676
BseRI	GAGGAG	9 cut(s)	26, 29, 67, 263, 314, 401, 610, 613, 671
BseSI	GKGCMC	3 cut(s)	340, 633, 857
BseX3I	CGGCCG	1 cut(s)	331
Bsh1236I	CGCG	4 cut(s)	49, 207, 225, 477
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	333, 338
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	2 cut(s)	375, 857
BsiSI	CCGG	4 cut(s)	334, 552, 611, 815
BsmAI	GTCTC	2 cut(s)	9, 148
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	333, 338
Bsp119I	TTCGAA	1 cut(s)	545
Bsp120I	GGGCCC	1 cut(s)	336
Bsp1286I	GDGCHC	4 cut(s)	340, 375, 633, 857
Bsp143I	GATC	3 cut(s)	498, 603, 684
Bsp19I	CCATGG	1 cut(s)	379
BspANI	GGCC	2 cut(s)	333, 338
BspFNI	CGCG	4 cut(s)	49, 207, 225, 477
BspLI	GGNNCC	3 cut(s)	338, 556, 709
BspPI	GGATC	2 cut(s)	506, 611
BspT104I	TTCGAA	1 cut(s)	545
BsrBI	CCGCTC	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	379, 396, 444
BssMI	GATC	3 cut(s)	498, 603, 684
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	340, 344
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	4 cut(s)	246, 318, 619, 676
BstFNI	CGCG	4 cut(s)	49, 207, 225, 477
BstHHI	GCGC	3 cut(s)	51, 209, 530
BstKTI	GATC	3 cut(s)	501, 606, 687
BstMAI	GTCTC	2 cut(s)	9, 148
BstMBI	GATC	3 cut(s)	498, 603, 684
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	333, 396
BstSLI	GKGCMC	3 cut(s)	340, 633, 857
BstUI	CGCG	4 cut(s)	49, 207, 225, 477
BstZI	CGGCCG	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	333, 338
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	3 cut(s)	88, 178, 289
BtrI	CACGTC	2 cut(s)	316, 403
BtsCI	GGATG	4 cut(s)	246, 318, 619, 676
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	340, 344
CfoI	GCGC	3 cut(s)	51, 209, 530
Cfr13I	GGNCC	2 cut(s)	336, 337
Csp6I	GTAC	1 cut(s)	844
CviAII	CATG	3 cut(s)	343, 380, 858
CviJI	RGCY	8 cut(s)	333, 338, 373, 409, 505, 610, 720, 814
CviKI_1	RGCY	8 cut(s)	333, 338, 373, 409, 505, 610, 720, 814
CviQI	GTAC	1 cut(s)	844
DpnI	GATC	3 cut(s)	500, 605, 686
DpnII	GATC	3 cut(s)	498, 603, 684
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	331
EagI	CGGCCG	1 cut(s)	331
EciI	GGCGGA	3 cut(s)	11, 148, 599
Ecl136II	GAGCTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	2 cut(s)	340, 375
Eco52I	CGGCCG	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	2 cut(s)	340, 375
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	346, 383, 861
FaiI	YATR	5 cut(s)	344, 381, 495, 834, 859
FatI	CATG	3 cut(s)	342, 379, 857
FauI	CCCGC	3 cut(s)	23, 287, 347
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	4 cut(s)	233, 305, 626, 683
FriOI	GRGCYC	2 cut(s)	340, 375
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	839
FspI	TGCGCA	1 cut(s)	529
GlaI	GCGC	3 cut(s)	50, 208, 529
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	333, 338
HapII	CCGG	4 cut(s)	334, 552, 611, 815
HhaI	GCGC	3 cut(s)	51, 209, 530
Hin1II	CATG	3 cut(s)	346, 383, 861
Hin6I	GCGC	3 cut(s)	49, 207, 528
HinP1I	GCGC	3 cut(s)	49, 207, 528
HinfI	GANTC	5 cut(s)	176, 227, 384, 741, 747
HpaII	CCGG	4 cut(s)	334, 552, 611, 815
HphI	GGTGA	2 cut(s)	160, 205
Hpy166II	GTNNAC	2 cut(s)	844, 855
Hpy188I	TCNGA	3 cut(s)	468, 486, 746
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	844, 855
HpyAV	CCTTC	3 cut(s)	40, 376, 796
HpyCH4IV	ACGT	3 cut(s)	315, 402, 734
HpyCH4V	TGCA	2 cut(s)	822, 855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpySE526I	ACGT	3 cut(s)	315, 402, 734
Hsp92II	CATG	3 cut(s)	346, 383, 861
HspAI	GCGC	3 cut(s)	49, 207, 528
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	3 cut(s)	498, 603, 684
LmnI	GCTCC	3 cut(s)	101, 414, 766
LpnPI	CCDG	9 cut(s)	347, 383, 410, 434, 497, 565, 574, 624, 828
LweI	GCATC	2 cut(s)	201, 312
MaeI	CTAG	1 cut(s)	839
MaeII	ACGT	3 cut(s)	315, 402, 734
MaeIII	GTNAC	2 cut(s)	211, 460
MalI	GATC	3 cut(s)	500, 605, 686
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	3 cut(s)	498, 603, 684
MboII	GAAGA	4 cut(s)	499, 787, 790, 802
MfeI	CAATTG	1 cut(s)	523
MhlI	GDGCHC	4 cut(s)	340, 375, 633, 857
MluCI	AATT	5 cut(s)	254, 523, 688, 700, 760
MlyI	GAGTC	4 cut(s)	170, 221, 378, 756
MmeI	TCCRAC	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	2 cut(s)	722, 810
MspI	CCGG	4 cut(s)	334, 552, 611, 815
MspR9I	CCNGG	2 cut(s)	335, 398
MunI	CAATTG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	4 cut(s)	49, 207, 225, 477
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	3 cut(s)	498, 603, 684
NlaIII	CATG	3 cut(s)	346, 383, 861
NlaIV	GGNNCC	3 cut(s)	338, 556, 709
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	211, 460
NsbI	TGCGCA	1 cut(s)	529
NspI	RCATGY	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	741
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	4 cut(s)	170, 221, 378, 755
PpsI	GAGTC	4 cut(s)	170, 221, 378, 755
Psp124BI	GAGCTC	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	338, 556, 709
PspOMI	GGGCCC	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	336, 337
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	722, 810
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	3 cut(s)	498, 603, 684
Sau96I	GGNCC	2 cut(s)	336, 337
SchI	GAGTC	4 cut(s)	170, 221, 378, 756
ScrFI	CCNGG	2 cut(s)	335, 398
SduI	GDGCHC	4 cut(s)	340, 375, 633, 857
SfaNI	GCATC	2 cut(s)	201, 312
SfuI	TTCGAA	1 cut(s)	545
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	5 cut(s)	254, 523, 688, 700, 760
SspMI	CTAG	1 cut(s)	839
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	333, 396
StyI	CCWWGG	1 cut(s)	379
TaiI	ACGT	3 cut(s)	318, 405, 737
TaqI	TCGA	5 cut(s)	261, 369, 501, 545, 606
TasI	AATT	5 cut(s)	254, 523, 688, 700, 760
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	741
Tru1I	TTAA	2 cut(s)	722, 810
Tru9I	TTAA	2 cut(s)	722, 810
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	2 cut(s)	211, 460
Tsp45I	GTSAC	2 cut(s)	211, 460
TspRI	CASTG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	853
XapI	RAATTY	2 cut(s)	700, 760
XceI	RCATGY	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.