Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001913.1

Orthogroup ID

OG0015753

Physical Location & Seq

Genomic Coordinates Forward (+)

96793 .. 98318

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ctgcaattgtacccaccggatgtcgaccacggccggattttgtacattgcgacctcgtgcaccactagcagcttaagaatcctcgtcgtcgccgccgccgcgatccatctccttcgtcactataagctcgatctccccgacgatctcctctcctccaaaccctctgatcagtcctggacctccaaagggttgaaaggtaaaaatttgatctggtttcaggatgaactgagggatgctgttttgcttgtattcgccaacaaacaagatcttccaactgcaatgaatgctgcagaaataactgataagcttaggcttcattctctccgccaacgtcactggcttaagataatgaaggccaaggagttcggtttgccttggagattccgggggaggatagttttatttgtttccaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

139

Amino Acids

15.98

Weight (kDa)

9.67

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	72 - 114	7.9e-11	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015753)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426281 RchiOBHm_Chr7g0210381
rosa_laevigata	RLG00000008534 RLG00000022487 RLG00000029835
rosa_multiflora	Rmu_sc0001913.1_g000033 Rmu_sc0007894.1_g000003
rosa_roxburghii	Rroxscaffold_1G00040390
rosa_rugosa	Rorug02G0466700 Rorug03G0118900 Rorug04G0140800
rosa_samantha	Rh2DG054500 Rh4BG387800 Rh4CG286500 Rh5AG015100 Rh5CG016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	101
AciI	CCGC	4 cut(s)	93, 96, 99, 325
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	2 cut(s)	11, 44
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflII	CTTAAG	2 cut(s)	73, 341
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	72, 127, 307
AluI	AGCT	3 cut(s)	72, 127, 307
Alw21I	GWGCWC	1 cut(s)	62
Alw44I	GTGCAC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	2 cut(s)	31, 354
ApaLI	GTGCAC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	69, 287
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	81, 274
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	175
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	386
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	2 cut(s)	73, 341
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	5 cut(s)	70, 93, 96, 99, 288
BlsI	GCNGC	5 cut(s)	71, 94, 97, 100, 289
Bme1390I	CCNGG	2 cut(s)	175, 386
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	175, 386
BmsI	GCATC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	28, 357, 374, 385
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	45, 285
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	4 cut(s)	28, 357, 374, 385
BseGI	GGATG	3 cut(s)	25, 226, 238
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	45, 285
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	137, 142
BseSI	GKGCMC	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	81, 274
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	33, 356
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	17, 34, 385
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	33, 356
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
BspACI	CCGC	4 cut(s)	93, 96, 99, 325
BspANI	GGCC	2 cut(s)	33, 356
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	97
BspTI	CTTAAG	2 cut(s)	73, 341
BsrDI	GCAATG	2 cut(s)	45, 285
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	4 cut(s)	28, 357, 374, 385
BssMI	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	357, 374
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	175
BstAFI	CTTAAG	2 cut(s)	73, 341
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	227, 308
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	3 cut(s)	25, 226, 238
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	6 cut(s)	105, 133, 145, 169, 210, 268
BstMBI	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 98, 284
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	173, 384
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	81, 274
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	33, 356
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	25, 226, 238
BtsIMutI	CAGTG	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	10, 43
CviJI	RGCY	7 cut(s)	33, 72, 127, 307, 313, 340, 356
CviKI_1	RGCY	7 cut(s)	33, 72, 127, 307, 313, 340, 356
CviQI	GTAC	2 cut(s)	10, 43
DdeI	CTNAG	2 cut(s)	227, 308
DpnI	GATC	6 cut(s)	104, 132, 144, 168, 209, 267
DpnII	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	314
EclXI	CGGCCG	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	357, 374
Eco47I	GGWCC	1 cut(s)	177
Eco52I	CGGCCG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	357, 374
ErhI	CCWWGG	2 cut(s)	357, 374
FaiI	YATR	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	70, 93, 96, 99, 288
FokI	GGATG	3 cut(s)	32, 233, 245
Fsp4HI	GCNGC	5 cut(s)	70, 93, 96, 99, 288
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	5 cut(s)	70, 93, 96, 99, 288
HaeIII	GGCC	2 cut(s)	33, 356
HapII	CCGG	3 cut(s)	17, 34, 385
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	78, 381
HpaII	CCGG	3 cut(s)	17, 34, 385
Hpy166II	GTNNAC	2 cut(s)	25, 60
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	25, 60
Hpy99I	CGWCG	3 cut(s)	89, 92, 143
HpyAV	CCTTC	2 cut(s)	122, 346
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	4, 60, 278, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 98, 284
HpyF3I	CTNAG	2 cut(s)	227, 308
HpySE526I	ACGT	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
LpnPI	CCDG	8 cut(s)	30, 47, 160, 187, 196, 203, 322, 398
Lsp1109I	GCAGC	2 cut(s)	81, 274
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	116, 332
MalI	GATC	6 cut(s)	104, 132, 144, 168, 209, 267
MboI	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
MboII	GAAGA	1 cut(s)	260
MfeI	CAATTG	1 cut(s)	5
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	2 cut(s)	5, 202
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	8 cut(s)	64, 92, 158, 163, 172, 190, 222, 384
MseI	TTAA	2 cut(s)	74, 342
MspCI	CTTAAG	2 cut(s)	73, 341
MspI	CCGG	3 cut(s)	17, 34, 385
MspR9I	CCNGG	2 cut(s)	175, 386
MunI	CAATTG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	66, 98, 284
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
NmuCI	GTSAC	2 cut(s)	116, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	78, 381
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	5 cut(s)	71, 94, 97, 100, 289
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	2 cut(s)	11, 44
RsaNI	GTAC	2 cut(s)	10, 43
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	74, 342
SatI	GCNGC	5 cut(s)	70, 93, 96, 99, 288
Sau3AI	GATC	6 cut(s)	102, 130, 142, 166, 207, 265
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	175, 386
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	7 cut(s)	56, 74, 129, 182, 199, 309, 334
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	73, 341
SmoI	CTYRAG	2 cut(s)	73, 341
Sse9I	AATT	2 cut(s)	5, 202
SsiI	CCGC	4 cut(s)	93, 96, 99, 325
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	173, 384
StyI	CCWWGG	2 cut(s)	357, 374
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	24, 129
TasI	AATT	2 cut(s)	5, 202
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	3 cut(s)	95, 98, 101
TfiI	GAWTC	2 cut(s)	78, 381
Tru1I	TTAA	2 cut(s)	74, 342
Tru9I	TTAA	2 cut(s)	74, 342
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	2 cut(s)	116, 332
TseI	GCWGC	2 cut(s)	69, 287
Tsp45I	GTSAC	2 cut(s)	116, 332
TspDTI	ATGAA	4 cut(s)	237, 296, 305, 365
TspRI	CASTG	1 cut(s)	341
Vha464I	CTTAAG	2 cut(s)	73, 341
VneI	GTGCAC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.