Rmu_sc0002060.1_g000022

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002060.1
OG0012997
Physical Location & Seq
Forward (+)
88414 .. 89798
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
atgacaatgaagagtcaccatcagagtcgttccctgacgcctaattgggtagtttctaaggatcctgaaaacccattctcattcccaaatcaattttctcctgctgatttcagtgggtatgctccggtacttgattgggaaaatgaatttccgccgatggtgcaagactacacttttattgatgctcttcctttcatggagagttgtcttccttcgctcgatattcaacctatccgacacctatttccaggagatgatttttcctttggagataatggaaatgagaatgagaatggagttaacagtgagttgttcgcttctgggtttgagcgccctaatcatcatcatcaacaagaacaagaacaagaacagcagcagcagcagcaacaacaacatcaacaacaagaaaagcagcaacctaatttactgcttcctagcaatgaagatcaaagtggtgctgatagagaacatgtggctgaagagaggaagaggaagaggcggtgcatgagaattgatcacgaagtgaaaagtggtagtagtactagaagctattcatcgtcgagattgttgtctagggaaacaatctcctcgtacttttacatgcctataactcaggcagctaaggaactcaacatcggcttgacccttttgaagaaaaggtgccgggacttgggtattcgtcgttggcctcatcggaagctcaccagcctccaaaccctaatccggaacattcaggagttgggaaaggaagaagaggagaacgaagagaagcttcggaatgcgatcgagttgttggagagggagaagaagttgatggaggaagctcctgatatgcaactggaggataataccaagcggttgagacaggcttgttttaaggccaactacaagaagagaaagatcatggggatgaatctgattgattatccaccgcattcttctaatttcagcaccattgatactcgtggaggcaagtccgtcgctattcttgacaatcgaggagacgaggaggacgaagagattaagtcacttttatctgactccttctcatcttcctctagcatgatgatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

357

Amino Acids

41.47

Weight (kDa)

5.57

Isoelectric Point (pI)

72.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 190 - 237 5.6e-22 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18790 AT1G74480
fragaria_vesca FvH4_5g14910
malus_domestica MD06G1193600.v1.1
prunus_persica Prupe.5G193900_v2.0.a1
pyrus_communis pycom14g16650
rosa_chinensis RchiOBHm_Chr7g0181471
rosa_laevigata RLG00000005191
rosa_multiflora Rmu_sc0002060.1_g000022 Rmu_sc0002993.1_g000018 Rmu_sc0004621.1_g000024
rosa_roxburghii Rroxscaffold_3G00271970
rosa_rugosa Rorug06G0441600
rosa_samantha Rh7AG043400 Rh7BG042800 Rh7CG044600 Rh7DG043200
rosa_wichuraiana Rw7G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 660
AccIII TCCGGA 1 cut(s) 723
AciI CCGC 4 cut(s) 152, 499, 856, 932
AclWI GGATC 2 cut(s) 56, 69
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 3 cut(s) 129, 541, 593
AfiI CCNNNNNNNGG 2 cut(s) 670, 723
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 2 cut(s) 227, 652
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AluBI AGCT 5 cut(s) 549, 620, 700, 772, 824
AluI AGCT 5 cut(s) 549, 620, 700, 772, 824
Alw26I GTCTC 2 cut(s) 856, 996
AlwI GGATC 2 cut(s) 56, 69
Aor13HI TCCGGA 1 cut(s) 723
AoxI GGCC 2 cut(s) 686, 879
ApeKI GCWGC 6 cut(s) 373, 376, 379, 382, 412, 617
ApoI RAATTY 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 550
AspLEI GCGC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 665
AsuHPI GGTGA 2 cut(s) 8, 694
BamHI GGATCC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 660
BauI CACGAG 1 cut(s) 963
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 6 cut(s) 385, 388, 391, 394, 424, 629
BccI CCATC 3 cut(s) 27, 151, 808
BcgI CGANNNNNNTGC 2 cut(s) 961, 995
BciT130I CCWGG 1 cut(s) 249
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 665
BcoDI GTCTC 2 cut(s) 856, 996
BfaI CTAG 4 cut(s) 435, 543, 573, 1059
BfoI RGCGCY 1 cut(s) 334
BisI GCNGC 6 cut(s) 374, 377, 380, 383, 413, 618
BlsI GCNGC 6 cut(s) 375, 378, 381, 384, 414, 619
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 249, 665
BmiI GGNNCC 2 cut(s) 63, 662
BmrFI CCNGG 2 cut(s) 249, 665
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 38
BsaWI WCCGGW 2 cut(s) 124, 723
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 2 cut(s) 670, 723
Bse1I ACTGG 1 cut(s) 843
Bse3DI GCAATG 1 cut(s) 445
BseAI TCCGGA 1 cut(s) 723
BseBI CCWGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 915
BseLI CCNNNNNNNGG 2 cut(s) 670, 723
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 626
BseNI ACTGG 1 cut(s) 843
BseRI GAGGAG 4 cut(s) 577, 770, 1014, 1022
BseXI GCAGC 6 cut(s) 385, 388, 391, 394, 424, 629
Bsh1285I CGRYCG 1 cut(s) 786
BshFI GGCC 2 cut(s) 688, 881
BshNI GGYRCC 1 cut(s) 660
BsiEI CGRYCG 1 cut(s) 786
BsiSI CCGG 3 cut(s) 125, 664, 724
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 2 cut(s) 670, 723
BsmAI GTCTC 2 cut(s) 856, 996
BsmBI CGTCTC 1 cut(s) 996
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 2 cut(s) 784, 934
BsnI GGCC 2 cut(s) 688, 881
Bsp13I TCCGGA 1 cut(s) 723
Bsp143I GATC 5 cut(s) 61, 445, 514, 783, 900
BspACI CCGC 4 cut(s) 152, 499, 856, 932
BspANI GGCC 2 cut(s) 688, 881
BspCNI CTCAG 1 cut(s) 625
BspEI TCCGGA 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 63, 662
BspPI GGATC 2 cut(s) 56, 69
BspQI GCTCTTC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 1 cut(s) 843
BssMI GATC 5 cut(s) 61, 445, 514, 783, 900
BssNI GRCGYC 1 cut(s) 38
BssSI CACGAG 1 cut(s) 963
Bst2BI CACGAG 1 cut(s) 963
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 9 cut(s) 5, 192, 474, 482, 488, 747, 759, 887, 1011
BstACI GRCGYC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 57, 612, 621
BstF5I GGATG 1 cut(s) 915
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 5 cut(s) 64, 448, 517, 786, 903
BstMAI GTCTC 2 cut(s) 856, 996
BstMBI GATC 5 cut(s) 61, 445, 514, 783, 900
BstMCI CGRYCG 1 cut(s) 786
BstMWI GCNNNNNNNGC 3 cut(s) 160, 379, 382
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 2 cut(s) 473, 604
BstSCI CCNGG 2 cut(s) 247, 663
BstV1I GCAGC 6 cut(s) 385, 388, 391, 394, 424, 629
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 2 cut(s) 688, 881
BtsCI GGATG 1 cut(s) 915
BtsIMutI CAGTG 2 cut(s) 118, 310
CfoI GCGC 1 cut(s) 333
CseI GACGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 128, 540, 592
CviAII CATG 6 cut(s) 196, 470, 505, 601, 904, 1063
CviQI GTAC 3 cut(s) 128, 540, 592
DdeI CTNAG 3 cut(s) 57, 612, 621
DpnI GATC 5 cut(s) 63, 447, 516, 785, 902
DpnII GATC 5 cut(s) 61, 445, 514, 783, 900
DraIII CACNNNGTG 1 cut(s) 523
Eam1104I CTCTTC 9 cut(s) 5, 192, 474, 482, 488, 747, 759, 887, 1011
EarI CTCTTC 9 cut(s) 5, 192, 474, 482, 488, 747, 759, 887, 1011
EciI GGCGGA 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 996
FaeI CATG 6 cut(s) 199, 473, 508, 604, 907, 1066
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 1 cut(s) 680
FatI CATG 6 cut(s) 195, 469, 504, 600, 903, 1062
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 6 cut(s) 374, 377, 380, 383, 413, 618
FokI GGATG 1 cut(s) 922
Fsp4HI GCNGC 6 cut(s) 374, 377, 380, 383, 413, 618
FspBI CTAG 4 cut(s) 435, 543, 573, 1059
GlaI GCGC 1 cut(s) 332
GluI GCNGC 6 cut(s) 374, 377, 380, 383, 413, 618
GsuI CTGGAG 1 cut(s) 860
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 2 cut(s) 688, 881
HapII CCGG 3 cut(s) 125, 664, 724
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 6 cut(s) 199, 473, 508, 604, 907, 1066
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 4 cut(s) 13, 25, 913, 1040
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 3 cut(s) 125, 664, 724
HphI GGTGA 2 cut(s) 8, 694
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 6 cut(s) 24, 236, 696, 777, 918, 1039
Hpy188III TCNNGA 7 cut(s) 65, 518, 561, 724, 734, 827, 989
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 3 cut(s) 562, 684, 983
HpyAV CCTTC 2 cut(s) 222, 1054
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 163, 504, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 379, 382
HpyF3I CTNAG 3 cut(s) 57, 612, 621
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 6 cut(s) 199, 473, 508, 604, 907, 1066
HspAI GCGC 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 723
Ksp22I TGATCA 1 cut(s) 514
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 5 cut(s) 61, 445, 514, 783, 900
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 127, 829
Lsp1109I GCAGC 6 cut(s) 385, 388, 391, 394, 424, 629
LweI GCATC 1 cut(s) 172
MaeI CTAG 4 cut(s) 435, 543, 573, 1059
MaeIII GTNAC 2 cut(s) 14, 1026
MalI GATC 5 cut(s) 63, 447, 516, 785, 902
MboI GATC 5 cut(s) 61, 445, 514, 783, 900
MflI RGATCY 1 cut(s) 61
MluCI AATT 6 cut(s) 43, 92, 146, 421, 510, 943
MlyI GAGTC 3 cut(s) 22, 34, 1034
MmeI TCCRAC 2 cut(s) 259, 774
MroI TCCGGA 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 3 cut(s) 300, 876, 1023
MslI CAYNNNNRTG 1 cut(s) 908
MspI CCGG 3 cut(s) 125, 664, 724
MspR9I CCNGG 2 cut(s) 249, 665
Mva1269I GAATGC 2 cut(s) 784, 934
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 160, 379, 382
NciI CCSGG 1 cut(s) 665
NdeII GATC 5 cut(s) 61, 445, 514, 783, 900
NlaIII CATG 6 cut(s) 199, 473, 508, 604, 907, 1066
NlaIV GGNNCC 2 cut(s) 63, 662
NmuCI GTSAC 2 cut(s) 14, 1026
NspI RCATGY 2 cut(s) 473, 604
PciI ACATGT 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 1011
PctI GAATGC 2 cut(s) 784, 934
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 1 cut(s) 913
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 6 cut(s) 375, 378, 381, 384, 414, 619
Ple19I CGATCG 1 cut(s) 786
PleI GAGTC 3 cut(s) 21, 33, 1034
PpsI GAGTC 3 cut(s) 21, 33, 1034
PscI ACATGT 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 63, 662
PsuI RGATCY 1 cut(s) 61
PvuI CGATCG 1 cut(s) 786
RsaI GTAC 3 cut(s) 129, 541, 593
RsaNI GTAC 3 cut(s) 128, 540, 592
RseI CAYNNNNRTG 1 cut(s) 908
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 300, 876, 1023
SatI GCNGC 6 cut(s) 374, 377, 380, 383, 413, 618
Sau3AI GATC 5 cut(s) 61, 445, 514, 783, 900
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 3 cut(s) 22, 34, 1034
ScrFI CCNGG 2 cut(s) 249, 665
SetI ASST 9 cut(s) 232, 243, 421, 551, 622, 662, 702, 774, 826
SfaNI GCATC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 908
Sse9I AATT 6 cut(s) 43, 92, 146, 421, 510, 943
SsiI CCGC 4 cut(s) 152, 499, 856, 932
SspMI CTAG 4 cut(s) 435, 543, 573, 1059
StyD4I CCNGG 2 cut(s) 247, 663
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 4 cut(s) 219, 560, 786, 997
TasI AATT 6 cut(s) 43, 92, 146, 421, 510, 943
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 1 cut(s) 913
Tru1I TTAA 3 cut(s) 300, 876, 1023
Tru9I TTAA 3 cut(s) 300, 876, 1023
TscAI CASTG 2 cut(s) 118, 310
TseFI GTSAC 2 cut(s) 14, 1026
TseI GCWGC 6 cut(s) 373, 376, 379, 382, 412, 617
Tsp45I GTSAC 2 cut(s) 14, 1026
TspDTI ATGAA 6 cut(s) 23, 159, 184, 456, 543, 926
TspGWI ACGGA 1 cut(s) 967
TspRI CASTG 2 cut(s) 118, 310
XapI RAATTY 1 cut(s) 146
XceI RCATGY 2 cut(s) 473, 604
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 4 cut(s) 435, 543, 573, 1059
ZrmI AGTACT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.