Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002218.1

Orthogroup ID

OG0006338

Physical Location & Seq

Genomic Coordinates Forward (+)

3846 .. 8917

Gene Structure 5072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

atggggacggggaatccccagtttcttattacggagattgggacgggcaaggggatgaggaatgaagttgggtatgagaatgatagggtttttcttggagatacggatagacagttagtgatggagataacagaagcagctgagaaaccaagctccaaaggccaagcatggttctgcaccactgggttaccaagcgacattgtggtggaagttgaagacatgtcctttcatcttcacaagtttcctctcatgtccaaaagccgaaagcttcacaacctaatcacagagcaagaggctaacccatcacatccccaacaagagctagaagaagagccggacgaaattgaagaagtgcagtgtcaaatagtcctctcagacttcccgggcggctccgagaccttcgaaatcgccgccaaattctgctacggcgtcaaaatcgacctcaactcgaccaatgtgggacctctccgctgcgccggagagtatctagaaatgacagaagagtactccgaagacaacctcatctcaaaaaccgaaaggttcctgtctcaagccgtgttcaagagcttcaaagagtccatcaaagctctcaaatcctgcgagcgcgtcatgccactcgcagagaccttaggcattacacagagttgcatcgactccatcgctaacagagccaccaacgccgatcctagcctgttcggctggccggtcaatgaagtcgccccgaacccaagttcatccaaacaccagattctgtggaatgggattgacacaggtggaagaagaaaagggatgtctagagcaaaccatccagattcttggctcgaagacttggtcctcttaagcctccctttcttcaagcgattgattatggcaatgaaagacggaaatctcagcctggaaatggtggagacctgtttgatgtactacgccaagaaatacattcccggaatctcaagatcgactcgaaagtcctcttcttccaccaccacttctagctcctctttagctttggaaaaccaacagagagaactattggagaccataatctcaaaccttccattggagaaatcaccaagacctccaaccaatacaagatttctatttgggctgttgagaacagcgaatatcctaaacgcctcgcagggatgtaaagccgcattggagaagaagattgggtcgcagctcgagcaagctagcttagacgatctgctcataccgagctattcgtatctgaatgagaccctatacgacgtcgattgcgtcgagaggattctggggtattttttggacgggttggagcagagaaacagaaacagagatggaattgaaggtggagatgaagacgaagaccgtgatatagaaagtgctagatcgccggcgctgatgcttgtcgggaaattaaccgacgagtttctctccgagatcgcatcggatgcgaatttgatgccggatagattctacaactttgccatggccctgccggagcaggcgaggctgttcgacgacgggctttacagagcagttgatgtttatctaaaggctcatccatggatatcggaaccggagcgggagaagatctgcggcatactagactcccagaagctcacactcgaggcgtgcacgcacgccgcgcagaacgagcggttgccgctacgcgccgtcgtgcaagtcttgttcttcgagcagcttcagctccgtcacgctatcgccggtacccttatcgccggggagaccgcgcccccggactccagtcggccctcggtgttgcgaagagaggcggagactgaggaggaggaggaggaggaggaggaaggcggtgctgcggtgatcgccggtacccttatcgccggggagaccgcgccgccgggctccagtcggccctcggtgttgcgaagagaggcggagactgaggaggacgaggagcagcaggaggaggaggaggagggcggtgctgtggaggtacacgcggaggaaggaggaggcggcacgtggaggtcggctgtgagggagaatcaggtgctgcggttggatatggatagcatgaggacgcgggtgcaccaacttgagcgggagtgttccaacatgaagaaggtgatcgaaaagattgacaacaaatcgggtcaacccgatggacgggccggatggaaaggctcgttgacccggcggttcgggtgcaagttcaagacccaagtgtgcgattcgcacgagccgacggtcgtggacgggcggaaagggcggcgccaccagcatcaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

752

Amino Acids

84.02

Weight (kDa)

4.89

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	271 - 540	2.5e-85	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66560 AT5G66560 AT5G66560 AT5G66560
fragaria_vesca	FvH4_1g14470 FvH4_1g14470 FvH4_1g14470 FvH4_1g14470 FvH4_1g14470
malus_domestica	MD02G1158300.v1.1 MD15G1273100.v1.1
prunus_persica	Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1
pyrus_communis	pycom02g12480 pycom15g23630
rosa_chinensis	RchiOBHm_Chr2g0103231
rosa_laevigata	RLG00000017216
rosa_multiflora	Rmu_sc0002218.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139850
rosa_rugosa	Rorug02G0112500
rosa_samantha	Rh2AG161200 Rh2BG168000 Rh2CG168200 Rh2DG166900
rosa_wichuraiana	Rw2G012650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	967
AatII	GACGTC	1 cut(s)	1254
Acc65I	GGTACC	2 cut(s)	1712, 1835
AccB1I	GGYRCC	3 cut(s)	1712, 1835, 2238
AccBSI	CCGCTC	3 cut(s)	1567, 1642, 2068
AccII	CGCG	7 cut(s)	606, 1631, 1656, 1736, 1859, 1967, 2050
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	416, 1438
AcuI	CTGAAG	1 cut(s)	1673
AcvI	CACGTG	1 cut(s)	1989
AcyI	GRCGYC	3 cut(s)	429, 1251, 2239
AfaI	GTAC	5 cut(s)	506, 923, 1714, 1837, 1962
AfiI	CCNNNNNNNGG	3 cut(s)	901, 1060, 2133
AflII	CTTAAG	1 cut(s)	838
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	7 cut(s)	215, 347, 562, 571, 856, 1328, 2182
AjnI	CCWGG	1 cut(s)	894
Alw21I	GWGCWC	2 cut(s)	1622, 2058
Alw44I	GTGCAC	2 cut(s)	1618, 2054
AlwI	GGATC	1 cut(s)	677
AlwNI	CAGNNNCTG	2 cut(s)	751, 2020
Ama87I	CYCGRG	3 cut(s)	382, 1184, 1610
AoxI	GGCC	6 cut(s)	160, 701, 1473, 1754, 1877, 2136
ApaLI	GTGCAC	2 cut(s)	1618, 2054
ApeKI	GCWGC	7 cut(s)	137, 471, 1180, 1684, 1820, 1924, 2020
ApoI	RAATTY	2 cut(s)	416, 1438
ArsI	GACNNNNNNTTYG	2 cut(s)	816, 848
Asp718I	GGTACC	2 cut(s)	1712, 1835
AspLEI	GCGC	8 cut(s)	476, 606, 1381, 1633, 1658, 1738, 1861, 2241
AspS9I	GGNCC	6 cut(s)	461, 832, 1474, 1755, 1878, 2136
AsuC2I	CCSGG	8 cut(s)	383, 384, 945, 1726, 1742, 1849, 1866, 2161
AsuHPI	GGTGA	3 cut(s)	1062, 1837, 2104
AsuII	TTCGAA	1 cut(s)	402
AsuNHI	GCTAGC	1 cut(s)	1193
AvaI	CYCGRG	3 cut(s)	382, 1184, 1610
AvaII	GGWCC	2 cut(s)	461, 832
AxyI	CCTNAGG	1 cut(s)	628
BaeGI	GKGCMC	2 cut(s)	1622, 2058
BanI	GGYRCC	3 cut(s)	1712, 1835, 2238
BanII	GRGCYC	1 cut(s)	1871
BauI	CACGAG	1 cut(s)	2204
BbrPI	CACGTG	1 cut(s)	1989
BbsI	GAAGAC	5 cut(s)	222, 519, 831, 1347, 1353
Bbv12I	GWGCWC	2 cut(s)	1622, 2058
BbvI	GCAGC	7 cut(s)	149, 458, 1192, 1696, 1807, 1936, 2007
BccI	CCATC	8 cut(s)	115, 310, 587, 665, 813, 1313, 2123, 2136
BceAI	ACGGC	3 cut(s)	442, 539, 1643
BcgI	CGANNNNNNTGC	2 cut(s)	1426, 1460
BciT130I	CCWGG	1 cut(s)	896
BcnI	CCSGG	8 cut(s)	383, 384, 945, 1726, 1742, 1849, 1866, 2161
BfaI	CTAG	8 cut(s)	323, 488, 687, 795, 993, 1194, 1368, 1589
BfoI	RGCGCY	2 cut(s)	1382, 2242
BfrI	CTTAAG	1 cut(s)	838
BglI	GCCNNNNNGGC	1 cut(s)	696
BglII	AGATCT	1 cut(s)	1575
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	9 cut(s)	383, 384, 896, 945, 1726, 1742, 1849, 1866, 2161
Bme18I	GGWCC	2 cut(s)	461, 832
BmeT110I	CYCGRG	3 cut(s)	382, 1184, 1610
BmgT120I	GGNCC	6 cut(s)	461, 832, 1474, 1755, 1878, 2136
BmiI	GGNNCC	8 cut(s)	391, 462, 542, 1560, 1714, 1837, 1870, 2240
BmrFI	CCNGG	9 cut(s)	383, 384, 896, 945, 1726, 1742, 1849, 1866, 2161
BmrI	ACTGGG	2 cut(s)	13, 192
BmsI	GCATC	5 cut(s)	657, 1374, 1423, 1434, 1436
BmtI	GCTAGC	1 cut(s)	1197
BmuI	ACTGGG	2 cut(s)	13, 192
BoxI	GACNNNNGTC	1 cut(s)	1749
BpiI	GAAGAC	5 cut(s)	222, 519, 831, 1347, 1353
BplI	GAGNNNNNCTC	2 cut(s)	1400, 1432
BpmI	CTGGAG	2 cut(s)	1732, 1855
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	3 cut(s)	534, 937, 2084
BpuMI	CCSGG	8 cut(s)	383, 384, 945, 1726, 1742, 1849, 1866, 2161
BsaAI	YACGTR	1 cut(s)	1989
BsaBI	GATNNNNATC	1 cut(s)	1530
BsaHI	GRCGYC	3 cut(s)	429, 1251, 2239
BsaI	GGTCTC	7 cut(s)	389, 617, 902, 1031, 1232, 1724, 1847
BsaJI	CCNNGG	8 cut(s)	382, 1470, 1547, 1725, 1740, 1758, 1848, 1881
BsaWI	WCCGGW	1 cut(s)	1561
Bsc4I	CCNNNNNNNGG	3 cut(s)	901, 1060, 2133
Bse118I	RCCGGY	4 cut(s)	703, 1375, 1709, 1832
Bse1I	ACTGG	4 cut(s)	19, 187, 1749, 1872
Bse21I	CCTNAGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	879
Bse8I	GATNNNNATC	1 cut(s)	1530
BseBI	CCWGG	1 cut(s)	896
BseDI	CCNNGG	8 cut(s)	382, 1470, 1547, 1725, 1740, 1758, 1848, 1881
BseGI	GGATG	9 cut(s)	60, 307, 734, 795, 805, 1151, 1438, 1543, 2147
BseJI	GATNNNNATC	1 cut(s)	1530
BseLI	CCNNNNNNNGG	3 cut(s)	901, 1060, 2133
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	5 cut(s)	132, 387, 904, 1776, 1899
BseNI	ACTGG	4 cut(s)	19, 187, 1749, 1872
BseSI	GKGCMC	2 cut(s)	1622, 2058
BseXI	GCAGC	7 cut(s)	149, 458, 1192, 1696, 1807, 1936, 2007
BsgI	GTGCAG	2 cut(s)	160, 374
Bsh1236I	CGCG	7 cut(s)	606, 1631, 1656, 1736, 1859, 1967, 2050
Bsh1285I	CGRYCG	1 cut(s)	2217
BshFI	GGCC	6 cut(s)	162, 703, 1475, 1756, 1879, 2138
BshNI	GGYRCC	3 cut(s)	1712, 1835, 2238
BsiEI	CGRYCG	1 cut(s)	2217
BsiHKAI	GWGCWC	2 cut(s)	1622, 2058
BsiHKCI	CYCGRG	3 cut(s)	382, 1184, 1610
BslFI	GGGAC	3 cut(s)	19, 55, 474
BslI	CCNNNNNNNGG	3 cut(s)	901, 1060, 2133
BsmFI	GGGAC	3 cut(s)	19, 55, 474
BsnI	GGCC	6 cut(s)	162, 703, 1475, 1756, 1879, 2138
Bso31I	GGTCTC	7 cut(s)	389, 617, 902, 1031, 1232, 1724, 1847
BsoBI	CYCGRG	3 cut(s)	382, 1184, 1610
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	1622, 1871, 2058
Bsp143I	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
Bsp19I	CCATGG	2 cut(s)	1470, 1547
BspANI	GGCC	6 cut(s)	162, 703, 1475, 1756, 1879, 2138
BspCNI	CTCAG	5 cut(s)	133, 386, 903, 1777, 1900
BspFNI	CGCG	7 cut(s)	606, 1631, 1656, 1736, 1859, 1967, 2050
BspLI	GGNNCC	8 cut(s)	391, 462, 542, 1560, 1714, 1837, 1870, 2240
BspOI	GCTAGC	1 cut(s)	1197
BspPI	GGATC	1 cut(s)	677
BspQI	GCTCTTC	1 cut(s)	324
BspT104I	TTCGAA	1 cut(s)	402
BspT107I	GGYRCC	3 cut(s)	1712, 1835, 2238
BspTI	CTTAAG	1 cut(s)	838
BspTNI	GGTCTC	7 cut(s)	389, 617, 902, 1031, 1232, 1724, 1847
BsrBI	CCGCTC	3 cut(s)	1567, 1642, 2068
BsrDI	GCAATG	1 cut(s)	879
BsrFI	RCCGGY	4 cut(s)	703, 1375, 1709, 1832
BsrI	ACTGG	4 cut(s)	19, 187, 1749, 1872
BssAI	RCCGGY	4 cut(s)	703, 1375, 1709, 1832
BssECI	CCNNGG	8 cut(s)	382, 1470, 1547, 1725, 1740, 1758, 1848, 1881
BssMI	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
BssNI	GRCGYC	3 cut(s)	429, 1251, 2239
BssSI	CACGAG	1 cut(s)	2204
BssT1I	CCWWGG	2 cut(s)	1470, 1547
Bst2BI	CACGAG	1 cut(s)	2204
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	3 cut(s)	114, 1352, 2215
Bst6I	CTCTTC	5 cut(s)	324, 495, 979, 1765, 1888
BstACI	GRCGYC	3 cut(s)	429, 1251, 2239
BstAFI	CTTAAG	1 cut(s)	838
BstAPI	GCANNNNNTGC	1 cut(s)	1433
BstBAI	YACGTR	1 cut(s)	1989
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	9 cut(s)	602, 701, 1191, 1195, 1377, 1488, 1618, 1622, 1626
BstDEI	CTNAG	7 cut(s)	141, 373, 628, 890, 1198, 1785, 1908
BstDSI	CCRYGG	2 cut(s)	1470, 1547
BstEII	GGTNACC	1 cut(s)	186
BstF5I	GGATG	9 cut(s)	60, 307, 734, 795, 805, 1151, 1438, 1543, 2147
BstFNI	CGCG	7 cut(s)	606, 1631, 1656, 1736, 1859, 1967, 2050
BstH2I	RGCGCY	2 cut(s)	1382, 2242
BstHHI	GCGC	8 cut(s)	476, 606, 1381, 1633, 1658, 1738, 1861, 2241
BstKTI	GATC	8 cut(s)	685, 959, 1207, 1373, 1425, 1578, 1830, 2097
BstMBI	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
BstMCI	CGRYCG	1 cut(s)	2217
BstNI	CCWGG	1 cut(s)	896
BstNSI	RCATGY	1 cut(s)	223
BstPAI	GACNNNNGTC	1 cut(s)	1749
BstPI	GGTNACC	1 cut(s)	186
BstSCI	CCNGG	9 cut(s)	381, 382, 894, 943, 1724, 1740, 1847, 1864, 2159
BstSLI	GKGCMC	2 cut(s)	1622, 2058
BstUI	CGCG	7 cut(s)	606, 1631, 1656, 1736, 1859, 1967, 2050
BstV1I	GCAGC	7 cut(s)	149, 458, 1192, 1696, 1807, 1936, 2007
BstV2I	GAAGAC	5 cut(s)	222, 519, 831, 1347, 1353
BstX2I	RGATCY	1 cut(s)	1575
BstXI	CCANNNNNNTGG	1 cut(s)	816
BstYI	RGATCY	1 cut(s)	1575
Bsu36I	CCTNAGG	1 cut(s)	628
BsuRI	GGCC	6 cut(s)	162, 703, 1475, 1756, 1879, 2138
BtgI	CCRYGG	2 cut(s)	1470, 1547
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	9 cut(s)	60, 307, 734, 795, 805, 1151, 1438, 1543, 2147
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	180, 362
Cac8I	GCNNGC	9 cut(s)	602, 701, 1191, 1195, 1377, 1488, 1618, 1622, 1626
CaiI	CAGNNNCTG	2 cut(s)	751, 2020
CfoI	GCGC	8 cut(s)	476, 606, 1381, 1633, 1658, 1738, 1861, 2241
Cfr10I	RCCGGY	4 cut(s)	703, 1375, 1709, 1832
Cfr13I	GGNCC	6 cut(s)	461, 832, 1474, 1755, 1878, 2136
Cfr9I	CCCGGG	1 cut(s)	382
CseI	GACGC	4 cut(s)	418, 595, 1249, 2056
Csp6I	GTAC	5 cut(s)	505, 922, 1713, 1836, 1961
CviAII	CATG	8 cut(s)	168, 220, 250, 610, 1471, 1548, 2041, 2083
CviQI	GTAC	5 cut(s)	505, 922, 1713, 1836, 1961
DdeI	CTNAG	7 cut(s)	141, 373, 628, 890, 1198, 1785, 1908
DinI	GGCGCC	1 cut(s)	2240
DpnI	GATC	8 cut(s)	684, 958, 1206, 1372, 1424, 1577, 1829, 2096
DpnII	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
DrdI	GACNNNNNNGTC	1 cut(s)	967
DseDI	GACNNNNNNGTC	1 cut(s)	967
EaeI	YGGCCR	1 cut(s)	701
Eam1104I	CTCTTC	5 cut(s)	324, 495, 979, 1765, 1888
EarI	CTCTTC	5 cut(s)	324, 495, 979, 1765, 1888
EciI	GGCGGA	3 cut(s)	1793, 1916, 2242
Eco130I	CCWWGG	2 cut(s)	1470, 1547
Eco24I	GRGCYC	1 cut(s)	1871
Eco31I	GGTCTC	7 cut(s)	389, 617, 902, 1031, 1232, 1724, 1847
Eco32I	GATATC	1 cut(s)	1554
Eco47I	GGWCC	2 cut(s)	461, 832
Eco57I	CTGAAG	1 cut(s)	1673
Eco72I	CACGTG	1 cut(s)	1989
Eco81I	CCTNAGG	1 cut(s)	628
Eco88I	CYCGRG	3 cut(s)	382, 1184, 1610
Eco91I	GGTNACC	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	461
EcoO65I	GGTNACC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	894
EcoRV	GATATC	1 cut(s)	1554
EcoT14I	CCWWGG	2 cut(s)	1470, 1547
EcoT38I	GRGCYC	1 cut(s)	1871
EgeI	GGCGCC	1 cut(s)	2240
EheI	GGCGCC	1 cut(s)	2240
ErhI	CCWWGG	2 cut(s)	1470, 1547
FaeI	CATG	8 cut(s)	171, 223, 253, 613, 1474, 1551, 2044, 2086
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FaqI	GGGAC	3 cut(s)	19, 55, 474
FatI	CATG	8 cut(s)	167, 219, 249, 609, 1470, 1547, 2040, 2082
FauI	CCCGC	3 cut(s)	1560, 2043, 2061
FokI	GGATG	9 cut(s)	67, 294, 721, 792, 802, 1158, 1445, 1530, 2154
FriOI	GRGCYC	1 cut(s)	1871
FspBI	CTAG	8 cut(s)	323, 488, 687, 795, 993, 1194, 1368, 1589
GlaI	GCGC	8 cut(s)	475, 605, 1380, 1632, 1657, 1737, 1860, 2240
GsuI	CTGGAG	2 cut(s)	1732, 1855
HaeII	RGCGCY	2 cut(s)	1382, 2242
HaeIII	GGCC	6 cut(s)	162, 703, 1475, 1756, 1879, 2138
HgaI	GACGC	4 cut(s)	418, 595, 1249, 2056
HhaI	GCGC	8 cut(s)	476, 606, 1381, 1633, 1658, 1738, 1861, 2241
Hin1I	GRCGYC	3 cut(s)	429, 1251, 2239
Hin1II	CATG	8 cut(s)	171, 223, 253, 613, 1474, 1551, 2044, 2086
Hin6I	GCGC	8 cut(s)	474, 604, 1379, 1631, 1656, 1736, 1859, 2239
HinP1I	GCGC	8 cut(s)	474, 604, 1379, 1631, 1656, 1736, 1859, 2239
HincII	GTYRAC	2 cut(s)	2123, 2157
HindII	GTYRAC	2 cut(s)	2123, 2157
HindIII	AAGCTT	1 cut(s)	266
HphI	GGTGA	3 cut(s)	1062, 1837, 2104
Hpy166II	GTNNAC	6 cut(s)	1620, 1963, 2056, 2123, 2157, 2221
Hpy188I	TCNGA	7 cut(s)	376, 394, 511, 1233, 1420, 1432, 1558
Hpy188III	TCNNGA	8 cut(s)	488, 562, 795, 809, 954, 1264, 1393, 2182
Hpy8I	GTNNAC	6 cut(s)	1620, 1963, 2056, 2123, 2157, 2221
Hpy99I	CGWCG	8 cut(s)	1253, 1256, 1265, 1409, 1505, 1508, 1664, 2215
HpyAV	CCTTC	6 cut(s)	409, 1064, 1322, 1805, 1967, 2083
HpyCH4III	ACNGT	3 cut(s)	114, 1352, 2215
HpyCH4IV	ACGT	2 cut(s)	1251, 1988
HpyCH4V	TGCA	7 cut(s)	177, 355, 648, 1620, 1666, 2056, 2175
HpyF3I	CTNAG	7 cut(s)	141, 373, 628, 890, 1198, 1785, 1908
HpySE526I	ACGT	2 cut(s)	1251, 1988
Hsp92I	GRCGYC	3 cut(s)	429, 1251, 2239
Hsp92II	CATG	8 cut(s)	171, 223, 253, 613, 1474, 1551, 2044, 2086
HspAI	GCGC	8 cut(s)	474, 604, 1379, 1631, 1656, 1736, 1859, 2239
KasI	GGCGCC	1 cut(s)	2238
KpnI	GGTACC	2 cut(s)	1716, 1839
KroI	GCCGGC	1 cut(s)	1375
KroNI	GCCGGC	1 cut(s)	1377
Kzo9I	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	9 cut(s)	158, 395, 1001, 1297, 1483, 1564, 1698, 1874, 1921
Lsp1109I	GCAGC	7 cut(s)	149, 458, 1192, 1696, 1807, 1936, 2007
LweI	GCATC	5 cut(s)	657, 1374, 1423, 1434, 1436
MaeI	CTAG	8 cut(s)	323, 488, 687, 795, 993, 1194, 1368, 1589
MaeII	ACGT	2 cut(s)	1251, 1988
MaeIII	GTNAC	2 cut(s)	186, 1697
MalI	GATC	8 cut(s)	684, 958, 1206, 1372, 1424, 1577, 1829, 2096
MbiI	CCGCTC	3 cut(s)	1567, 1642, 2068
MboI	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
MflI	RGATCY	1 cut(s)	1575
MhlI	GDGCHC	3 cut(s)	1622, 1871, 2058
MluCI	AATT	5 cut(s)	342, 416, 1323, 1397, 1438
Mly113I	GGCGCC	1 cut(s)	2239
MlyI	GAGTC	5 cut(s)	584, 647, 955, 1586, 1739
MmeI	TCCRAC	4 cut(s)	1106, 1275, 2007, 2103
MreI	CGCCGGCG	1 cut(s)	1375
MroNI	GCCGGC	1 cut(s)	1375
MseI	TTAA	2 cut(s)	839, 1400
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	2 cut(s)	140, 471
MspCI	CTTAAG	1 cut(s)	838
MspR9I	CCNGG	9 cut(s)	383, 384, 896, 945, 1726, 1742, 1849, 1866, 2161
MvaI	CCWGG	1 cut(s)	896
MvnI	CGCG	7 cut(s)	606, 1631, 1656, 1736, 1859, 1967, 2050
NaeI	GCCGGC	1 cut(s)	1377
NarI	GGCGCC	1 cut(s)	2239
NciI	CCSGG	8 cut(s)	383, 384, 945, 1726, 1742, 1849, 1866, 2161
NcoI	CCATGG	2 cut(s)	1470, 1547
NdeII	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
NgoMIV	GCCGGC	1 cut(s)	1375
NheI	GCTAGC	1 cut(s)	1193
NlaIII	CATG	8 cut(s)	171, 223, 253, 613, 1474, 1551, 2044, 2086
NlaIV	GGNNCC	8 cut(s)	391, 462, 542, 1560, 1714, 1837, 1870, 2240
NmuCI	GTSAC	1 cut(s)	1697
NspI	RCATGY	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	402
PaeR7I	CTCGAG	2 cut(s)	1184, 1610
PciI	ACATGT	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	3 cut(s)	1257, 1260, 2207
PdiI	GCCGGC	1 cut(s)	1377
PfeI	GAWTC	8 cut(s)	13, 748, 812, 948, 1270, 1455, 2011, 2198
PflFI	GACNNNGTC	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	943
PleI	GAGTC	5 cut(s)	583, 647, 955, 1586, 1739
PluTI	GGCGCC	1 cut(s)	2242
PmaCI	CACGTG	1 cut(s)	1989
PmlI	CACGTG	1 cut(s)	1989
PpsI	GAGTC	5 cut(s)	583, 647, 955, 1586, 1739
Ppu21I	YACGTR	1 cut(s)	1989
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	1 cut(s)	219
PshAI	GACNNNNGTC	1 cut(s)	1749
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	894
PspCI	CACGTG	1 cut(s)	1989
PspEI	GGTNACC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	894
PspN4I	GGNNCC	8 cut(s)	391, 462, 542, 1560, 1714, 1837, 1870, 2240
PspPI	GGNCC	6 cut(s)	461, 832, 1474, 1755, 1878, 2136
PspPPI	RGGWCCY	1 cut(s)	461
PspXI	VCTCGAGB	2 cut(s)	1184, 1610
PstNI	CAGNNNCTG	2 cut(s)	751, 2020
PsuI	RGATCY	1 cut(s)	1575
PsyI	GACNNNGTC	1 cut(s)	830
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	5 cut(s)	506, 923, 1714, 1837, 1962
RsaNI	GTAC	5 cut(s)	505, 922, 1713, 1836, 1961
RseI	CAYNNNNRTG	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	839, 1400
Sau3AI	GATC	8 cut(s)	682, 956, 1204, 1370, 1422, 1575, 1827, 2094
Sau96I	GGNCC	6 cut(s)	461, 832, 1474, 1755, 1878, 2136
ScaI	AGTACT	1 cut(s)	506
SchI	GAGTC	5 cut(s)	584, 647, 955, 1586, 1739
ScrFI	CCNGG	9 cut(s)	383, 384, 896, 945, 1726, 1742, 1849, 1866, 2161
SduI	GDGCHC	3 cut(s)	1622, 1871, 2058
SfaNI	GCATC	5 cut(s)	657, 1374, 1423, 1434, 1436
SfoI	GGCGCC	1 cut(s)	2240
Sfr274I	CTCGAG	2 cut(s)	1184, 1610
SfuI	TTCGAA	1 cut(s)	402
SgrAI	CRCCGGYG	1 cut(s)	1375
SinI	GGWCC	2 cut(s)	461, 832
SlaI	CTCGAG	2 cut(s)	1184, 1610
SmaI	CCCGGG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	6 cut(s)	549, 838, 952, 1184, 1610, 2063
SmoI	CTYRAG	6 cut(s)	549, 838, 952, 1184, 1610, 2063
Sse9I	AATT	5 cut(s)	342, 416, 1323, 1397, 1438
SspDI	GGCGCC	1 cut(s)	2238
SspMI	CTAG	8 cut(s)	323, 488, 687, 795, 993, 1194, 1368, 1589
StyD4I	CCNGG	9 cut(s)	381, 382, 894, 943, 1724, 1740, 1847, 1864, 2159
StyI	CCWWGG	2 cut(s)	1470, 1547
TaaI	ACNGT	3 cut(s)	114, 1352, 2215
TaiI	ACGT	2 cut(s)	1254, 1991
TasI	AATT	5 cut(s)	342, 416, 1323, 1397, 1438
TatI	WGTACW	2 cut(s)	504, 921
TauI	GCSGC	9 cut(s)	390, 413, 1157, 1584, 1631, 1651, 1864, 1986, 2239
TfiI	GAWTC	8 cut(s)	13, 748, 812, 948, 1270, 1455, 2011, 2198
Tru1I	TTAA	2 cut(s)	839, 1400
Tru9I	TTAA	2 cut(s)	839, 1400
TscAI	CASTG	2 cut(s)	187, 362
TseFI	GTSAC	1 cut(s)	1697
TseI	GCWGC	7 cut(s)	137, 471, 1180, 1684, 1820, 1924, 2020
Tsp45I	GTSAC	1 cut(s)	1697
TspDTI	ATGAA	7 cut(s)	78, 218, 723, 726, 890, 1353, 2099
TspGWI	ACGGA	4 cut(s)	47, 119, 897, 1685
TspMI	CCCGGG	1 cut(s)	382
TspRI	CASTG	2 cut(s)	187, 362
Tth111I	GACNNNGTC	1 cut(s)	830
Vha464I	CTTAAG	1 cut(s)	838
VneI	GTGCAC	2 cut(s)	1618, 2054
VpaK11BI	GGWCC	2 cut(s)	461, 832
XapI	RAATTY	2 cut(s)	416, 1438
XbaI	TCTAGA	2 cut(s)	487, 794
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	2 cut(s)	1184, 1610
XmaI	CCCGGG	1 cut(s)	382
XspI	CTAG	8 cut(s)	323, 488, 687, 795, 993, 1194, 1368, 1589
ZraI	GACGTC	1 cut(s)	1252
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.