Rmu_sc0002421.1_g000001

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002421.1
OG0015046
Physical Location & Seq
Reverse (-)
3841 .. 6049
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
atgtggatgatgggttacaacgatggtggtgacttcaacatgattccggattcagccttcaacggtcggaagcttcggcctctcgttcctaggcctctgtcatctcctcataacaacaacaacacttcaacaagtacacatgctccaccttgtttcagtcgaattcatgctgcatctgatttcttagcacaatatcaccagctgggtgaacaaagagggatgagagagttcaatacggtgccgcaggttgtagtcagctcgagatggaaccccacgccggaacagttgagggcactagaggagttatatcgacgagggactcgaaccccatcggctgagcagattcagcaaatcactgctcagcttagaaggtatggaaagatagagggcaagaacgtgttctattggttccaaaaccacaaggcaagagagagacagaaacgccgtcgccagatggaatctcacgacgatcttcaactcatgtgttcagatcaccaaaagaaggaatcattaggcggggcaagtaggacagtgtatgaagttgaagagaccaagaattgggcaccctctgcaaactgcatgactactagtctccaagatcagcttcatcatcaacaggaaacagtaaaagcaggagcagagagcaggacggaagcatgggtccaattcggtgaggaagaattgcagccacttcaacaagagcaaagaaggaattccatgactgtagaaaagaatgccaggtggcagatgatgcagttgtcttgtcctcctcctcctcgtcttcatgacctcacccacctcataaacgcccccacttgtaccagaacgacagtaagaacaatggagatggaccaaaagcagctcattaataaccgtaataataagactagtcctcctcatgatctcagcatctttatagctccctacaggtctggcgctgcccttaacggtcgccatctccaacaccgtaacgaagaagaagatatttcacgtggagatcagtctcaaaccctccagctatttccgcttcggagtagtacttgcggcgaaaaagataatcttacaaccgagaaatccttgctaaaccctagtttcggcactggccctaattaccagttttttgagttcctcccattgaagaactga

Protein Analysis

381

Amino Acids

44.0

Weight (kDa)

8.85

Isoelectric Point (pI)

64.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 87 - 146 1.8e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18010
fragaria_vesca FvH4_5g17270
malus_domestica MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica Prupe.5G232600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178511
rosa_laevigata RLG00000005441
rosa_multiflora Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii Rroxscaffold_3G00274850
rosa_rugosa Rorug06G0417700
rosa_samantha Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana Rw7G001280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 2 cut(s) 238, 562
AccB7I CCANNNNNTGG 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 4 cut(s) 242, 516, 1025, 1044
AcsI RAATTY 2 cut(s) 162, 712
AcvI CACGTG 1 cut(s) 992
AfaI GTAC 3 cut(s) 136, 820, 1039
AfiI CCNNNNNNNGG 4 cut(s) 277, 502, 558, 1094
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 8 cut(s) 37, 61, 129, 232, 476, 545, 695, 1138
AhdI GACNNNNNGTC 1 cut(s) 588
AhlI ACTAGT 2 cut(s) 587, 887
AjnI CCWGG 1 cut(s) 737
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 8 cut(s) 73, 202, 258, 364, 604, 862, 920, 1018
AluI AGCT 8 cut(s) 73, 202, 258, 364, 604, 862, 920, 1018
Alw26I GTCTC 4 cut(s) 427, 542, 596, 1008
Ama87I CYCGRG 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 77, 92, 1102
ApeKI GCWGC 4 cut(s) 170, 685, 859, 938
ApoI RAATTY 2 cut(s) 162, 712
AseI ATTAAT 1 cut(s) 867
Asp700I GAANNNNTTC 2 cut(s) 398, 712
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 938
AspS9I GGNCC 3 cut(s) 661, 850, 1103
AsuHPI GGTGA 6 cut(s) 41, 188, 218, 485, 683, 784
AvaI CYCGRG 1 cut(s) 259
AvaII GGWCC 2 cut(s) 661, 850
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 295, 565
BanI GGYRCC 2 cut(s) 238, 562
BbrPI CACGTG 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 773
BbvI GCAGC 4 cut(s) 157, 697, 871, 925
BccI CCATC 7 cut(s) 4, 17, 258, 337, 448, 841, 963
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 739
BcoDI GTCTC 4 cut(s) 427, 542, 596, 1008
BcuI ACTAGT 2 cut(s) 587, 887
BfaI CTAG 5 cut(s) 90, 296, 588, 888, 1089
BfmI CTRYAG 2 cut(s) 723, 925
BfoI RGCGCY 1 cut(s) 939
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 6 cut(s) 171, 242, 686, 860, 939, 1045
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 2 cut(s) 336, 360
BlsI GCNGC 6 cut(s) 172, 243, 687, 861, 940, 1046
BmcAI AGTACT 1 cut(s) 1039
Bme1390I CCNGG 1 cut(s) 739
Bme18I GGWCC 2 cut(s) 661, 850
BmeRI GACNNNNNGTC 1 cut(s) 588
BmeT110I CYCGRG 1 cut(s) 259
BmgT120I GGNCC 3 cut(s) 661, 850, 1103
BmiI GGNNCC 5 cut(s) 240, 269, 410, 564, 662
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 3 cut(s) 182, 741, 918
BpiI GAAGAC 1 cut(s) 773
BpmI CTGGAG 1 cut(s) 998
Bpu1102I GCTNAGC 2 cut(s) 336, 360
BsaAI YACGTR 1 cut(s) 992
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 877, 907
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 502, 558, 1094
Bse1I ACTGG 2 cut(s) 1105, 1114
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 12, 225
BseLI CCNNNNNNNGG 4 cut(s) 277, 502, 558, 1094
BseMII CTCAG 3 cut(s) 327, 374, 919
BseNI ACTGG 2 cut(s) 1105, 1114
BseRI GAGGAG 6 cut(s) 96, 314, 759, 762, 765, 885
BseSI GKGCMC 2 cut(s) 295, 565
BseXI GCAGC 4 cut(s) 157, 697, 871, 925
BseYI CCCAGC 1 cut(s) 202
Bsh1285I CGRYCG 2 cut(s) 67, 952
BshFI GGCC 3 cut(s) 79, 94, 1104
BshNI GGYRCC 2 cut(s) 238, 562
BsiEI CGRYCG 2 cut(s) 67, 952
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 2 cut(s) 47, 278
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 4 cut(s) 277, 502, 558, 1094
BsmAI GTCTC 4 cut(s) 427, 542, 596, 1008
BsmFI GGGAC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 3 cut(s) 79, 94, 1104
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 295, 565
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 469, 490, 598, 901, 997
Bsp1720I GCTNAGC 2 cut(s) 336, 360
BspACI CCGC 4 cut(s) 242, 516, 1025, 1044
BspANI GGCC 3 cut(s) 79, 94, 1104
BspCNI CTCAG 3 cut(s) 328, 373, 918
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 2 cut(s) 784, 898
BspLI GGNNCC 5 cut(s) 240, 269, 410, 564, 662
BspMI ACCTGC 1 cut(s) 235
BspT107I GGYRCC 2 cut(s) 238, 562
BspTNI GGTCTC 1 cut(s) 542
BsrI ACTGG 2 cut(s) 1105, 1114
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 5 cut(s) 469, 490, 598, 901, 997
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 739
Bst6I CTCTTC 1 cut(s) 540
BstAPI GCANNNNNTGC 2 cut(s) 569, 751
BstBAI YACGTR 1 cut(s) 992
BstDEI CTNAG 5 cut(s) 184, 336, 360, 365, 905
BstF5I GGATG 2 cut(s) 12, 225
BstH2I RGCGCY 1 cut(s) 939
BstHHI GCGC 1 cut(s) 938
BstKTI GATC 5 cut(s) 472, 493, 601, 904, 1000
BstMAI GTCTC 4 cut(s) 427, 542, 596, 1008
BstMBI GATC 5 cut(s) 469, 490, 598, 901, 997
BstMCI CGRYCG 2 cut(s) 67, 952
BstMWI GCNNNNNNNGC 4 cut(s) 346, 569, 751, 1024
BstNI CCWGG 1 cut(s) 739
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 737
BstSFI CTRYAG 2 cut(s) 723, 925
BstSLI GKGCMC 2 cut(s) 295, 565
BstV1I GCAGC 4 cut(s) 157, 697, 871, 925
BstV2I GAAGAC 1 cut(s) 773
BsuRI GGCC 3 cut(s) 79, 94, 1104
BtsCI GGATG 2 cut(s) 12, 225
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 354, 537, 1098
BveI ACCTGC 1 cut(s) 235
CciI TCATGA 2 cut(s) 784, 898
CfoI GCGC 1 cut(s) 938
Cfr13I GGNCC 3 cut(s) 661, 850, 1103
Csp6I GTAC 3 cut(s) 135, 819, 1038
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 9 cut(s) 40, 140, 167, 481, 580, 657, 718, 785, 899
CviQI GTAC 3 cut(s) 135, 819, 1038
DdeI CTNAG 5 cut(s) 184, 336, 360, 365, 905
DpnI GATC 5 cut(s) 471, 492, 600, 903, 999
DpnII GATC 5 cut(s) 469, 490, 598, 901, 997
DriI GACNNNNNGTC 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 540
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 661, 850
Eco72I CACGTG 1 cut(s) 992
Eco88I CYCGRG 1 cut(s) 259
EcoRI GAATTC 2 cut(s) 162, 712
EcoRII CCWGG 1 cut(s) 737
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 9 cut(s) 43, 143, 170, 484, 583, 660, 721, 788, 902
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 1044, 1076
FaqI GGGAC 1 cut(s) 331
FatI CATG 9 cut(s) 39, 139, 166, 480, 579, 656, 717, 784, 898
FauI CCCGC 1 cut(s) 509
Fnu4HI GCNGC 6 cut(s) 171, 242, 686, 860, 939, 1045
FokI GGATG 2 cut(s) 19, 232
Fsp4HI GCNGC 6 cut(s) 171, 242, 686, 860, 939, 1045
FspBI CTAG 5 cut(s) 90, 296, 588, 888, 1089
GlaI GCGC 1 cut(s) 937
GluI GCNGC 6 cut(s) 171, 242, 686, 860, 939, 1045
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 998
HaeII RGCGCY 1 cut(s) 939
HaeIII GGCC 3 cut(s) 79, 94, 1104
HapII CCGG 2 cut(s) 47, 278
HhaI GCGC 1 cut(s) 938
Hin1II CATG 9 cut(s) 43, 143, 170, 484, 583, 660, 721, 788, 902
Hin6I GCGC 1 cut(s) 936
HinP1I GCGC 1 cut(s) 936
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 43, 50, 319, 343, 458, 506
HpaII CCGG 2 cut(s) 47, 278
HphI GGTGA 6 cut(s) 41, 188, 218, 485, 683, 784
Hpy166II GTNNAC 2 cut(s) 137, 209
Hpy188I TCNGA 4 cut(s) 69, 178, 490, 1032
Hpy188III TCNNGA 5 cut(s) 47, 261, 464, 785, 899
Hpy8I GTNNAC 2 cut(s) 137, 209
Hpy99I CGWCG 3 cut(s) 315, 450, 470
HpyAV CCTTC 4 cut(s) 67, 363, 496, 702
HpyCH4IV ACGT 2 cut(s) 396, 991
HpyCH4V TGCA 5 cut(s) 173, 572, 579, 685, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 346, 569, 751, 1024
HpyF3I CTNAG 5 cut(s) 184, 336, 360, 365, 905
HpySE526I ACGT 2 cut(s) 396, 991
Hsp92II CATG 9 cut(s) 43, 143, 170, 484, 583, 660, 721, 788, 902
HspAI GCGC 1 cut(s) 936
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 5 cut(s) 469, 490, 598, 901, 997
LmnI GCTCC 3 cut(s) 148, 635, 925
Lsp1109I GCAGC 4 cut(s) 157, 697, 871, 925
LweI GCATC 3 cut(s) 182, 741, 918
MaeI CTAG 5 cut(s) 90, 296, 588, 888, 1089
MaeII ACGT 2 cut(s) 396, 991
MaeIII GTNAC 3 cut(s) 14, 29, 968
MalI GATC 5 cut(s) 471, 492, 600, 903, 999
MboI GATC 5 cut(s) 469, 490, 598, 901, 997
MboII GAAGA 7 cut(s) 464, 557, 689, 773, 986, 989, 992
MhlI GDGCHC 2 cut(s) 295, 565
MluCI AATT 6 cut(s) 162, 556, 665, 680, 712, 1108
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 2 cut(s) 47, 985
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 2 cut(s) 398, 712
MseI TTAA 2 cut(s) 867, 945
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 2 cut(s) 47, 278
MspR9I CCNGG 1 cut(s) 739
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 4 cut(s) 346, 569, 751, 1024
NdeII GATC 5 cut(s) 469, 490, 598, 901, 997
NlaIII CATG 9 cut(s) 43, 143, 170, 484, 583, 660, 721, 788, 902
NlaIV GGNNCC 5 cut(s) 240, 269, 410, 564, 662
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 259
PagI TCATGA 2 cut(s) 784, 898
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PctI GAATGC 1 cut(s) 739
PdmI GAANNNNTTC 2 cut(s) 398, 712
PfeI GAWTC 5 cut(s) 43, 50, 343, 458, 506
PflMI CCANNNNNTGG 1 cut(s) 558
PkrI GCNGC 6 cut(s) 172, 243, 687, 861, 940, 1046
PleI GAGTC 1 cut(s) 313
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 992
PshBI ATTAAT 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 737
PspCI CACGTG 1 cut(s) 992
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 5 cut(s) 240, 269, 410, 564, 662
PspPI GGNCC 3 cut(s) 661, 850, 1103
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 3 cut(s) 136, 820, 1039
RsaNI GTAC 3 cut(s) 135, 819, 1038
SaqAI TTAA 2 cut(s) 867, 945
SatI GCNGC 6 cut(s) 171, 242, 686, 860, 939, 1045
Sau3AI GATC 5 cut(s) 469, 490, 598, 901, 997
Sau96I GGNCC 3 cut(s) 661, 850, 1103
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 2 cut(s) 295, 565
SfaNI GCATC 3 cut(s) 182, 741, 918
SfcI CTRYAG 2 cut(s) 723, 925
Sfr274I CTCGAG 1 cut(s) 259
SinI GGWCC 2 cut(s) 661, 850
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SpeI ACTAGT 2 cut(s) 587, 887
Sse9I AATT 6 cut(s) 162, 556, 665, 680, 712, 1108
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 4 cut(s) 242, 516, 1025, 1044
SspMI CTAG 5 cut(s) 90, 296, 588, 888, 1089
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 2 cut(s) 399, 994
TaqI TCGA 4 cut(s) 160, 260, 310, 322
TasI AATT 6 cut(s) 162, 556, 665, 680, 712, 1108
TatI WGTACW 2 cut(s) 134, 1037
TauI GCSGC 2 cut(s) 244, 1047
TfiI GAWTC 5 cut(s) 43, 50, 343, 458, 506
Tru1I TTAA 2 cut(s) 867, 945
Tru9I TTAA 2 cut(s) 867, 945
TscAI CASTG 3 cut(s) 361, 537, 1105
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 4 cut(s) 170, 685, 859, 938
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 155, 552, 596, 773
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 3 cut(s) 361, 537, 1105
Van91I CCANNNNNTGG 1 cut(s) 558
VpaK11BI GGWCC 2 cut(s) 661, 850
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 2 cut(s) 162, 712
XceI RCATGY 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 398, 712
XspI CTAG 5 cut(s) 90, 296, 588, 888, 1089
ZrmI AGTACT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.