Rmu_sc0002723.1_g000050

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002723.1
OG0005397
Physical Location & Seq
Reverse (-)
178734 .. 182041
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
atggagtacttacaagcctataatgagtttgcatcacttgcttcgaatgaggaggagaggaagaggagtttagaggcagagttgatggacaattacaagaaagataaacgatcgaaatcattgctgcaaaagcaccaagagaagattagagcaaagagaaaatactccaagcaacaggcggaggaggaagactggctttcgcataaggggaaggtgacagttaaggagttcaaggggaaaccattggtgtcgttgagggagttttttactaaagaaggcaaggagctccctacttctaaagtgccaatatctattgttgcatctttcaagaagattaaggccctcgtaagtagtcattcccagcttgcaactgtattgcggaactcctcaaagcttgtagtacatgaagatgggaagaaggtcagacgccagcatcccctgactcaatcagatatggaagagttgcaacctcacattgttgttgctgaaaatttgcctgaggatcattgccaccaaaacctcatgaagattttctctgctgctgggaggtactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

184

Amino Acids

21.33

Weight (kDa)

9.5

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC4 PF02229 66 - 100 4e-10 Transcriptional Coactivator p15 (PC4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 179, 379
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 3 cut(s) 8, 402, 551
AgsI TTSAA 2 cut(s) 232, 328
AluBI AGCT 3 cut(s) 286, 364, 394
AluI AGCT 3 cut(s) 286, 364, 394
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 1 cut(s) 510
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 124, 539
ApoI RAATTY 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 498
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 111, 526
BccI CCATC 2 cut(s) 79, 404
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BisI GCNGC 2 cut(s) 125, 540
BlsI GCNGC 2 cut(s) 126, 541
BmcAI AGTACT 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 340
BmsI GCATC 3 cut(s) 41, 329, 442
BpiI GAAGAC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 2 cut(s) 119, 505
Bse8I GATNNNNATC 1 cut(s) 115
BseGI GGATG 1 cut(s) 433
BseJI GATNNNNATC 1 cut(s) 115
BseMI GCAATG 2 cut(s) 119, 505
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 5 cut(s) 65, 68, 79, 197, 376
BseXI GCAGC 2 cut(s) 111, 526
BseYI CCCAGC 2 cut(s) 360, 542
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 288
BsnI GGCC 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 110, 502
BspACI CCGC 2 cut(s) 179, 379
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 490
BspHI TCATGA 1 cut(s) 522
BspPI GGATC 1 cut(s) 510
BspT104I TTCGAA 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 119, 505
BsrI ACTGG 1 cut(s) 197
BssMI GATC 2 cut(s) 110, 502
BssNI GRCGYC 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 220, 373
Bst6I CTCTTC 2 cut(s) 56, 453
BstACI GRCGYC 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 366, 431
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 2 cut(s) 113, 505
BstMBI GATC 2 cut(s) 110, 502
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 38, 130
BstV1I GCAGC 2 cut(s) 111, 526
BstV2I GAAGAC 1 cut(s) 195
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 433
Cac8I GCNNGC 2 cut(s) 366, 431
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 1 cut(s) 435
Csp6I GTAC 3 cut(s) 7, 401, 550
CviAII CATG 2 cut(s) 404, 523
CviJI RGCY 6 cut(s) 17, 196, 286, 341, 364, 394
CviKI_1 RGCY 6 cut(s) 17, 196, 286, 341, 364, 394
CviQI GTAC 3 cut(s) 7, 401, 550
DdeI CTNAG 1 cut(s) 498
DpnI GATC 2 cut(s) 112, 504
DpnII GATC 2 cut(s) 110, 502
Eam1104I CTCTTC 2 cut(s) 56, 453
EarI CTCTTC 2 cut(s) 56, 453
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 2 cut(s) 407, 526
FaiI YATR 5 cut(s) 21, 204, 405, 455, 524
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 2 cut(s) 403, 522
Fnu4HI GCNGC 2 cut(s) 125, 540
FokI GGATG 1 cut(s) 420
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 125, 540
GluI GCNGC 2 cut(s) 125, 540
GsaI CCCAGC 2 cut(s) 364, 546
HaeIII GGCC 1 cut(s) 341
HgaI GACGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 2 cut(s) 407, 526
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 1 cut(s) 442
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 425, 451
Hpy188III TCNNGA 2 cut(s) 328, 523
HpyAV CCTTC 3 cut(s) 205, 269, 412
HpyCH4III ACNGT 2 cut(s) 220, 373
HpyCH4V TGCA 5 cut(s) 32, 127, 320, 368, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 130
HpyF3I CTNAG 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 2 cut(s) 407, 526
Kzo9I GATC 2 cut(s) 110, 502
LmnI GCTCC 2 cut(s) 283, 291
LpnPI CCDG 7 cut(s) 161, 178, 374, 443, 452, 510, 528
Lsp1109I GCAGC 2 cut(s) 111, 526
LweI GCATC 3 cut(s) 41, 329, 442
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 112, 504
MboI GATC 2 cut(s) 110, 502
MboII GAAGA 8 cut(s) 73, 154, 200, 343, 419, 427, 470, 538
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 91, 490
MlyI GAGTC 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 2 cut(s) 222, 336
MslI CAYNNNNRTG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 38, 130
NdeII GATC 2 cut(s) 110, 502
NlaIII CATG 2 cut(s) 407, 526
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 44
PagI TCATGA 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 530
PkrI GCNGC 2 cut(s) 126, 541
Ple19I CGATCG 1 cut(s) 113
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp124BI GAGCTC 1 cut(s) 288
PspFI CCCAGC 2 cut(s) 360, 542
PspPI GGNCC 1 cut(s) 340
PvuI CGATCG 1 cut(s) 113
RsaI GTAC 3 cut(s) 8, 402, 551
RsaNI GTAC 3 cut(s) 7, 401, 550
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 222, 336
SatI GCNGC 2 cut(s) 125, 540
Sau3AI GATC 2 cut(s) 110, 502
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 436
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 216, 288, 366, 396, 423, 472, 522, 551
SfaNI GCATC 3 cut(s) 41, 329, 442
SfuI TTCGAA 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 2 cut(s) 91, 490
SsiI CCGC 2 cut(s) 179, 379
SstI GAGCTC 1 cut(s) 288
TaaI ACNGT 2 cut(s) 220, 373
TaqI TCGA 2 cut(s) 44, 113
TasI AATT 2 cut(s) 91, 490
TatI WGTACW 2 cut(s) 6, 400
Tru1I TTAA 2 cut(s) 222, 336
Tru9I TTAA 2 cut(s) 222, 336
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 124, 539
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 420, 539
XapI RAATTY 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 530
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.