Rmu_sc0003033.1_g000011

SRP40, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003033.1
OG0008781
Physical Location & Seq
Reverse (-)
51841 .. 55837
3997 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
atggattcacaaggaggtagagctagggatcgaggtagacctagaggtaggagtagagctcgaggtaggggcaggattccccttcttgttgaagagatattcgagaatgaggttgagacgtcgaatgttaagctgcccgttccacatgttgtggaggttgtcaatgttgcagatgctactcgtttgtcaaagttggtaagggagatttcgaggctgggagtagtctttttcaagggaagtacggatcacagatgtaataaggacaatacaagtgttaacagtcagaaggagaatggaaatgatccagccctggaaaaaattgcaaaatctaaggacaaaaagaaaaacagaaagacttttgagttactcaatcaaggtgatgaacaagtctgcacagaagaattaaagaagcctgaacaagtggaagaggctgataagaatggcaaggtgaaaaagaaaaagaagggcaagattgtttctgatactcctgatggtgtagaacaatgtaaactagagccattgtctgtggcaactgaagaaagtttaaaagatcatacatctgtcaagggaaaaggtgttggcgattctgagacagagaagaaatctaaggataagaagaaaaagaaaaacaagtcaaatgatgattctgttagtcctaatgttgaacagggtggcgtggaagcaaaacaggatgcaaacggaactagtgaaacaattgcagatgaaaatctagtggatataaagcctaaagttaagaagaataagaaggaaagttcaggtggtgaggataagaaggtagttgccatgggagatgcaagtgacagtgttttgaaaaaggaagatttcaaattatctgatgttgaggctacaaataatgagaacaaaagctccaaaaaaaggaaaagattggattctgaaggaaatgattcagagcctgggaatagcaaagaagatgaaagtgctgagaagtcttccatgcagaagagcataaagaagcagtgcaatggttcaactgagccaaagactattaatgcatttcaaagggtaaaactggatgaggtggtattcacagatgagaagcttaaagataattcttactgggcgaaggatggtgcagagattggctatggtgcaaaagcacaggaaattctcggtcaagtcagaggaagggactttcggcatgaaaagaccaagaagaagcgtgggacatacagaggagggcagattgatctgcaatcgcactcagtcaagtttaattattctgatgaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

424

Amino Acids

47.12

Weight (kDa)

9.14

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP40_C PF05022 346 - 418 2.6e-27 SRP40, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 37
AclWI GGATC 3 cut(s) 36, 252, 296
AcsI RAATTY 1 cut(s) 1146
AcuI CTGAAG 2 cut(s) 555, 936
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 897
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 7 cut(s) 92, 232, 665, 832, 847, 1011, 1040
AhlI ACTAGT 1 cut(s) 704
AjnI CCWGG 2 cut(s) 309, 934
AloI GAACNNNNNNTCC 2 cut(s) 872, 904
AluBI AGCT 5 cut(s) 23, 59, 133, 888, 1081
AluI AGCT 5 cut(s) 23, 59, 133, 888, 1081
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 110, 584
AlwI GGATC 3 cut(s) 36, 252, 296
AlwNI CAGNNNCTG 1 cut(s) 935
Ama87I CYCGRG 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 1146
AseI ATTAAT 1 cut(s) 1029
Asp700I GAANNNNTTC 1 cut(s) 925
AsuHPI GGTGA 3 cut(s) 389, 460, 794
AvaI CYCGRG 1 cut(s) 60
BanII GRGCYC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 963
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 485, 1103
BciT130I CCWGG 2 cut(s) 311, 936
BcoDI GTCTC 2 cut(s) 110, 584
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 5 cut(s) 24, 42, 512, 705, 731
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 311, 936
BmeT110I CYCGRG 1 cut(s) 60
BmrFI CCNGG 2 cut(s) 311, 936
BmrI ACTGGG 1 cut(s) 1108
BmsI GCATC 3 cut(s) 163, 682, 802
BmuI ACTGGG 1 cut(s) 1108
BpiI GAAGAC 1 cut(s) 963
BplI GAGNNNNNCTC 2 cut(s) 43, 75
BsaBI GATNNNNATC 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 309, 804, 935
BsaXI ACNNNNNCTCC 2 cut(s) 872, 902
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse1I ACTGG 2 cut(s) 1056, 1103
Bse3DI GCAATG 1 cut(s) 1009
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 2 cut(s) 311, 936
BseDI CCNNGG 3 cut(s) 309, 804, 935
BseGI GGATG 3 cut(s) 697, 1060, 1114
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 1 cut(s) 897
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 4 cut(s) 579, 954, 1005, 1257
BseNI ACTGG 2 cut(s) 1056, 1103
BseRI GAGGAG 1 cut(s) 1230
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 2 cut(s) 376, 1134
BsiHKAI GWGCWC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 60
BslFI GGGAC 2 cut(s) 1184, 1219
BslI CCNNNNNNNGG 1 cut(s) 897
BsmAI GTCTC 2 cut(s) 110, 584
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 2 cut(s) 1184, 1219
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 5 cut(s) 28, 244, 301, 550, 1228
Bsp19I CCATGG 1 cut(s) 804
BspCNI CTCAG 4 cut(s) 580, 955, 1006, 1256
BspPI GGATC 3 cut(s) 36, 252, 296
BspQI GCTCTTC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 1009
BsrI ACTGG 2 cut(s) 1056, 1103
BssECI CCNNGG 3 cut(s) 309, 804, 935
BssMI GATC 5 cut(s) 28, 244, 301, 550, 1228
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 804
Bst2UI CCWGG 2 cut(s) 311, 936
Bst4CI ACNGT 2 cut(s) 281, 824
Bst6I CTCTTC 3 cut(s) 87, 420, 977
BstACI GRCGYC 1 cut(s) 119
BstDEI CTNAG 6 cut(s) 330, 588, 606, 963, 1014, 1243
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 3 cut(s) 697, 1060, 1114
BstKTI GATC 5 cut(s) 31, 247, 304, 553, 1231
BstMAI GTCTC 2 cut(s) 110, 584
BstMBI GATC 5 cut(s) 28, 244, 301, 550, 1228
BstNI CCWGG 2 cut(s) 311, 936
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 309, 934
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 963
BtgI CCRYGG 1 cut(s) 804
BtsCI GGATG 3 cut(s) 697, 1060, 1114
BtsI GCAGTG 1 cut(s) 1004
BtsIMutI CAGTG 2 cut(s) 829, 1004
CaiI CAGNNNCTG 1 cut(s) 935
Csp6I GTAC 1 cut(s) 240
CviAII CATG 4 cut(s) 146, 805, 976, 1181
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 6 cut(s) 330, 588, 606, 963, 1014, 1243
DpnI GATC 5 cut(s) 30, 246, 303, 552, 1230
DpnII GATC 5 cut(s) 28, 244, 301, 550, 1228
DraI TTTAAA 1 cut(s) 546
Eam1104I CTCTTC 3 cut(s) 87, 420, 977
EarI CTCTTC 3 cut(s) 87, 420, 977
Ecl136II GAGCTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 555, 936
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 309, 934
EcoT14I CCWWGG 1 cut(s) 804
EcoT22I ATGCAT 1 cut(s) 1036
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 804
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 4 cut(s) 149, 808, 979, 1184
FaiI YATR 9 cut(s) 147, 555, 740, 806, 977, 989, 1128, 1182, 1210
FaqI GGGAC 2 cut(s) 1184, 1219
FatI CATG 4 cut(s) 145, 804, 975, 1180
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 3 cut(s) 704, 1067, 1121
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 5 cut(s) 24, 42, 512, 705, 731
GluI GCNGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 218
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 4 cut(s) 149, 808, 979, 1184
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 1079
HinfI GANTC 6 cut(s) 5, 76, 584, 644, 911, 926
HpaI GTTAAC 1 cut(s) 277
HphI GGTGA 3 cut(s) 389, 460, 794
Hpy166II GTNNAC 3 cut(s) 38, 277, 509
Hpy188I TCNGA 8 cut(s) 285, 481, 589, 856, 916, 931, 1163, 1264
Hpy188III TCNNGA 2 cut(s) 103, 488
Hpy8I GTNNAC 3 cut(s) 38, 277, 509
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 8 cut(s) 92, 280, 457, 760, 787, 911, 1099, 1161
HpyCH4III ACNGT 2 cut(s) 281, 824
HpyCH4IV ACGT 1 cut(s) 119
HpyF3I CTNAG 6 cut(s) 330, 588, 606, 963, 1014, 1243
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 4 cut(s) 149, 808, 979, 1184
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 5 cut(s) 28, 244, 301, 550, 1228
LguI GCTCTTC 1 cut(s) 977
LmnI GCTCC 1 cut(s) 893
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 3 cut(s) 163, 682, 802
MaeI CTAG 5 cut(s) 24, 42, 512, 705, 731
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 363, 818
MalI GATC 5 cut(s) 30, 246, 303, 552, 1230
MboI GATC 5 cut(s) 28, 244, 301, 550, 1228
MfeI CAATTG 1 cut(s) 714
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 7 cut(s) 318, 401, 714, 848, 1090, 1146, 1255
Mph1103I ATGCAT 1 cut(s) 1036
MroXI GAANNNNTTC 1 cut(s) 925
MseI TTAA 8 cut(s) 129, 276, 404, 545, 753, 1029, 1083, 1254
MspR9I CCNGG 2 cut(s) 311, 936
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 2 cut(s) 311, 936
NcoI CCATGG 1 cut(s) 804
NdeII GATC 5 cut(s) 28, 244, 301, 550, 1228
NlaIII CATG 4 cut(s) 149, 808, 979, 1184
NmuCI GTSAC 1 cut(s) 818
NsiI ATGCAT 1 cut(s) 1036
NspI RCATGY 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 60
PciI ACATGT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 977
PdmI GAANNNNTTC 1 cut(s) 925
PfeI GAWTC 6 cut(s) 5, 76, 584, 644, 911, 926
PkrI GCNGC 1 cut(s) 135
PscI ACATGT 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 1029
Psp124BI GAGCTC 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 309, 934
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 2 cut(s) 309, 934
PspXI VCTCGAGB 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 935
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SacI GAGCTC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 977
SaqAI TTAA 8 cut(s) 129, 276, 404, 545, 753, 1029, 1083, 1254
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 5 cut(s) 28, 244, 301, 550, 1228
ScrFI CCNGG 2 cut(s) 311, 936
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 3 cut(s) 163, 682, 802
Sfr274I CTCGAG 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 7 cut(s) 318, 401, 714, 848, 1090, 1146, 1255
SspMI CTAG 5 cut(s) 24, 42, 512, 705, 731
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 309, 934
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 2 cut(s) 281, 824
TaiI ACGT 1 cut(s) 122
TaqI TCGA 5 cut(s) 31, 61, 102, 122, 209
TaqII GACCGA 1 cut(s) 1142
TasI AATT 7 cut(s) 318, 401, 714, 848, 1090, 1146, 1255
TfiI GAWTC 6 cut(s) 5, 76, 584, 644, 911, 926
Tru1I TTAA 8 cut(s) 129, 276, 404, 545, 753, 1029, 1083, 1254
Tru9I TTAA 8 cut(s) 129, 276, 404, 545, 753, 1029, 1083, 1254
TscAI CASTG 2 cut(s) 829, 1004
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 4 cut(s) 396, 738, 969, 1197
TspGWI ACGGA 2 cut(s) 257, 714
TspRI CASTG 2 cut(s) 829, 1004
VspI ATTAAT 1 cut(s) 1029
XapI RAATTY 1 cut(s) 1146
XceI RCATGY 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 925
XspI CTAG 5 cut(s) 24, 42, 512, 705, 731
ZraI GACGTC 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.