Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003477.1

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Forward (+)

16615 .. 18300

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgtatagcaacagatttattccatgccaatcgtcatccaggctccaccagtttgggctgaacgacaaggcgttgccggtgaaatatagtggattcagagaaggccaaccacaagacttccgcttctcattgccgctcgtcgtcgacctgccacggcgtcgtttcggcttcgtgtcgcattatcggtgtttctcggcgttgtcggtgatagccggaaggaagaaagagggagagtgggggttttggctttatgggacttgtacgacggcgttggtgattggtctttgttttgatcaacattctggcgttttggctcctttatgggacttgtacgatcgcgttggtgattgcaccttgattggttgttacactggcacattgagtgaagaggccttcaaggggctatgggacttttcaaaggaggagctggactcggagtcagagagtgaggtggttgagccggctaatgaagatttgaaattgtatctggaaaattttgaaaaggagctcaagaagcatactgaggaagctgcttctagagttgaggctgtattacaaagagctgaagagcaagggcaaatgattgaatcccttcacacctcttgtggtggggattacaatgtgttgactgtgagtcaggcgcagaatttgattcaggctggtgttgatgggttgagggttgggatcgggtctggctccatttgtactactcaagaggtttgcgtcggcggcaggggacaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

248

Amino Acids

27.6

Weight (kDa)

5.05

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	204 - 248	1.2e-11	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	121, 134, 729
AclWI	GGATC	1 cut(s)	692
AcsI	RAATTY	2 cut(s)	493, 646
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	3 cut(s)	262, 332, 706
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	5 cut(s)	397, 417, 478, 500, 587
AhdI	GACNNNNNGTC	2 cut(s)	436, 633
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	4 cut(s)	427, 508, 530, 563
AluI	AGCT	4 cut(s)	427, 508, 530, 563
Alw21I	GWGCWC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	2 cut(s)	103, 390
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	2 cut(s)	493, 646
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	643
AsuHPI	GGTGA	4 cut(s)	91, 217, 286, 356
BanII	GRGCYC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	2 cut(s)	170, 282
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	3 cut(s)	134, 531, 730
BlsI	GCNGC	3 cut(s)	135, 532, 731
Bme1390I	CCNGG	1 cut(s)	40
BmeRI	GACNNNNNGTC	2 cut(s)	436, 633
BmiI	GGNNCC	3 cut(s)	44, 315, 697
BmrFI	CCNGG	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpuEI	CTTGAG	2 cut(s)	494, 696
BsaHI	GRCGYC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse118I	RCCGGY	2 cut(s)	76, 460
Bse1I	ACTGG	2 cut(s)	49, 376
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	49, 376
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	517
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	105, 392
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	510
BsiSI	CCGG	3 cut(s)	77, 213, 461
BslFI	GGGAC	3 cut(s)	268, 338, 422
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmFI	GGGAC	3 cut(s)	268, 338, 422
BsnI	GGCC	2 cut(s)	105, 392
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	292, 334, 684
BspACI	CCGC	3 cut(s)	121, 134, 729
BspANI	GGCC	2 cut(s)	105, 392
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	44, 315, 697
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	692
BspQI	GCTCTTC	1 cut(s)	561
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	128
BsrFI	RCCGGY	2 cut(s)	76, 460
BsrI	ACTGG	2 cut(s)	49, 376
BssAI	RCCGGY	2 cut(s)	76, 460
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	3 cut(s)	292, 334, 684
BssNI	GRCGYC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	2 cut(s)	381, 561
BstACI	GRCGYC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	3 cut(s)	295, 337, 687
BstMBI	GATC	3 cut(s)	292, 334, 684
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 729
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	517
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	105, 392
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	643
Cfr10I	RCCGGY	2 cut(s)	76, 460
CseI	GACGC	2 cut(s)	146, 712
Csp6I	GTAC	3 cut(s)	261, 331, 705
CviAII	CATG	1 cut(s)	24
CviQI	GTAC	3 cut(s)	261, 331, 705
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	3 cut(s)	294, 336, 686
DpnII	GATC	3 cut(s)	292, 334, 684
DriI	GACNNNNNGTC	2 cut(s)	436, 633
Eam1104I	CTCTTC	2 cut(s)	381, 561
Eam1105I	GACNNNNNGTC	2 cut(s)	436, 633
EarI	CTCTTC	2 cut(s)	381, 561
Ecl136II	GAGCTC	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	510
FaeI	CATG	1 cut(s)	27
FaiI	YATR	8 cut(s)	6, 25, 87, 252, 322, 406, 519, 745
FaqI	GGGAC	3 cut(s)	268, 338, 422
FatI	CATG	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	134, 531, 730
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	3 cut(s)	134, 531, 730
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	3 cut(s)	134, 531, 730
HaeIII	GGCC	2 cut(s)	105, 392
HapII	CCGG	3 cut(s)	77, 213, 461
HgaI	GACGC	2 cut(s)	146, 712
HhaI	GCGC	1 cut(s)	643
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	27
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	2 cut(s)	145, 627
HindII	GTYRAC	2 cut(s)	145, 627
HinfI	GANTC	6 cut(s)	93, 431, 437, 587, 634, 652
HpaII	CCGG	3 cut(s)	77, 213, 461
HphI	GGTGA	4 cut(s)	91, 217, 286, 356
Hpy166II	GTNNAC	2 cut(s)	145, 627
Hpy188I	TCNGA	3 cut(s)	98, 436, 442
Hpy188III	TCNNGA	4 cut(s)	488, 511, 537, 713
Hpy8I	GTNNAC	2 cut(s)	145, 627
Hpy99I	CGWCG	5 cut(s)	143, 146, 162, 268, 728
HpyAV	CCTTC	4 cut(s)	95, 210, 403, 602
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 729
HpyF3I	CTNAG	1 cut(s)	522
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	27
HspAI	GCGC	1 cut(s)	641
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	292, 334, 684
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	5 cut(s)	48, 319, 424, 505, 701
Lsp1109I	GCAGC	1 cut(s)	517
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	294, 336, 686
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	3 cut(s)	292, 334, 684
MboII	GAAGA	4 cut(s)	232, 398, 482, 578
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	3 cut(s)	479, 493, 646
MlyI	GAGTC	3 cut(s)	425, 446, 643
MnlI	CCTC	9 cut(s)	220, 382, 415, 442, 517, 538, 610, 669, 709
MroNI	GCCGGC	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	591
MspI	CCGG	3 cut(s)	77, 213, 461
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	514, 729
NaeI	GCCGGC	1 cut(s)	462
NdeII	GATC	3 cut(s)	292, 334, 684
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	3 cut(s)	44, 315, 697
NmeAIII	GCCGAG	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	561
PdiI	GCCGGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	3 cut(s)	93, 587, 652
PkrI	GCNGC	3 cut(s)	135, 532, 731
Ple19I	CGATCG	1 cut(s)	337
PleI	GAGTC	3 cut(s)	425, 445, 642
PpsI	GAGTC	3 cut(s)	425, 445, 642
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	3 cut(s)	44, 315, 697
PvuI	CGATCG	1 cut(s)	337
RsaI	GTAC	3 cut(s)	262, 332, 706
RsaNI	GTAC	3 cut(s)	261, 331, 705
SacI	GAGCTC	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	561
SatI	GCNGC	3 cut(s)	134, 531, 730
Sau3AI	GATC	3 cut(s)	292, 334, 684
SchI	GAGTC	3 cut(s)	425, 446, 643
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	509, 711
SmoI	CTYRAG	2 cut(s)	509, 711
Sse9I	AATT	3 cut(s)	479, 493, 646
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	3 cut(s)	121, 134, 729
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	479, 493, 646
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	2 cut(s)	136, 732
TfiI	GAWTC	3 cut(s)	93, 587, 652
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	530
TspDTI	ATGAA	1 cut(s)	483
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	2 cut(s)	493, 646
XbaI	TCTAGA	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.