Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003510.1

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Forward (+)

96056 .. 97279

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggttgctagtacccaatgctgctgtggccataggccaataagcaccagttataccagaaccactccctcactccctctaaacgccatgtcactgtaccgcctgatcctccgctctttccgccgtccaaccaccaccccacaacccataacccaatccctaacctccctctcaccctcgaaaaccctaaccctaatccttactgtctcaccaccacccgctccttcgcctattccacagctgaagaagccgccgccgatgcaagcgcctcctccgcatagaacccccacttcaaccgctccgtcgctcaggcccgcctcctccactcgaccccaacgcaccccgcctcccgactcgacctccgccttcgtcggtcctcgcctcaacctccacaaccgcgttcagtctctcatacgggccaacgacctcgacgccgcctctgctgtggcgcgtcactctgtcttctccaacaagcgcctcaccgtcttcacatgcaatgccatcatcgccgccatgtaccgcggcaagacgtacaatgacgctattgctctcttccacttctttttcaaccaatccaacattgttcccaacattgtctcttataattattttgtgttatttaacactcattgtgatgagggccgtgtcgacgtggggcttgagatttaccgccatatcattgccaccgccccctttagtccctcgccggtgacgtgccggcatttgactaaagagttgattgatgccggtaggataggtgacgccgtggacttgttgagggagatgttgaataaggggcacggtgctgattctttggttttcaataacttgatcaaagggttcttgaatttggagaatttggacaaggccaatgagctttttgacgagcaggtgtttggtgtagatggggttgtcaatgccacctttacggattggttcttcaataaggggaaagagaaggaggcaatggattcatacaggtcattgcttgataggcagtttaggatgatcccagctacctccaatgttctcttggaattgttgcttaagcatgacaagaagaaggaggcatgggctttgttcgaacaaatgctggataatcacaccccacccaatacccagacagttaactccgagacttttaatataatggtcaatgagtgttttaagcttggaaagtttggtgagcgtttgacaccttcaagaaggtgggaacaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

407

Amino Acids

45.66

Weight (kDa)

9.38

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	340 - 388	5.9e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AarI	CACCTGC	1 cut(s)	880
Acc36I	ACCTGC	1 cut(s)	880
AccBSI	CCGCTC	3 cut(s)	114, 221, 299
AccI	GTMKAC	1 cut(s)	648
AccII	CGCG	3 cut(s)	399, 451, 522
AclWI	GGATC	2 cut(s)	100, 1003
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	847, 856
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	2 cut(s)	432, 762
AfaI	GTAC	4 cut(s)	13, 98, 518, 533
AflII	CTTAAG	1 cut(s)	1046
AgsI	TTSAA	7 cut(s)	294, 568, 790, 823, 847, 943, 1203
AjiI	CACGTC	2 cut(s)	652, 714
AluBI	AGCT	4 cut(s)	241, 877, 1016, 1171
AluI	AGCT	4 cut(s)	241, 877, 1016, 1171
Alw26I	GTCTC	4 cut(s)	211, 411, 601, 1130
AlwI	GGATC	2 cut(s)	100, 1003
AoxI	GGCC	6 cut(s)	28, 35, 311, 417, 640, 867
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	2 cut(s)	847, 856
AspLEI	GCGC	3 cut(s)	268, 451, 477
AspS9I	GGNCC	4 cut(s)	312, 374, 417, 640
AsuHPI	GGTGA	6 cut(s)	165, 201, 472, 721, 770, 1196
AsuII	TTCGAA	1 cut(s)	1083
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	801
BalI	TGGCCA	1 cut(s)	30
BbsI	GAAGAC	2 cut(s)	454, 478
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	2 cut(s)	509, 899
BceAI	ACGGC	3 cut(s)	108, 627, 749
BclI	TGATCA	1 cut(s)	831
BcoDI	GTCTC	4 cut(s)	211, 411, 601, 1130
BfaI	CTAG	1 cut(s)	9
BfoI	RGCGCY	2 cut(s)	269, 478
BfrI	CTTAAG	1 cut(s)	1046
BfuAI	ACCTGC	1 cut(s)	880
BisI	GCNGC	6 cut(s)	22, 251, 254, 435, 510, 523
BlsI	GCNGC	6 cut(s)	23, 252, 255, 436, 511, 524
Bme18I	GGWCC	1 cut(s)	374
BmgBI	CACGTC	2 cut(s)	652, 714
BmgT120I	GGNCC	4 cut(s)	312, 374, 417, 640
BmsI	GCATC	2 cut(s)	249, 733
BpiI	GAAGAC	2 cut(s)	454, 478
Bpu10I	CCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	1083
BpuEI	CTTGAG	1 cut(s)	680
BsaHI	GRCGYC	2 cut(s)	432, 762
BsaJI	CCNNGG	2 cut(s)	520, 765
BsaXI	ACNNNNNCTCC	4 cut(s)	331, 344, 361, 374
Bse118I	RCCGGY	3 cut(s)	706, 717, 746
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	4 cut(s)	502, 678, 972, 983
BseDI	CCNNGG	2 cut(s)	520, 765
BseGI	GGATG	1 cut(s)	1011
BseMI	GCAATG	4 cut(s)	502, 678, 972, 983
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	2 cut(s)	261, 310
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	1012
Bsh1236I	CGCG	3 cut(s)	399, 451, 522
BshFI	GGCC	6 cut(s)	30, 37, 313, 419, 642, 869
BsiSI	CCGG	3 cut(s)	707, 718, 747
BslFI	GGGAC	1 cut(s)	684
BsmAI	GTCTC	4 cut(s)	211, 411, 601, 1130
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	6 cut(s)	30, 37, 313, 419, 642, 869
Bsp119I	TTCGAA	1 cut(s)	1083
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp143I	GATC	3 cut(s)	105, 831, 1008
BspANI	GGCC	6 cut(s)	30, 37, 313, 419, 642, 869
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	3 cut(s)	399, 451, 522
BspMI	ACCTGC	1 cut(s)	880
BspPI	GGATC	2 cut(s)	100, 1003
BspT104I	TTCGAA	1 cut(s)	1083
BspTI	CTTAAG	1 cut(s)	1046
BsrBI	CCGCTC	3 cut(s)	114, 221, 299
BsrDI	GCAATG	4 cut(s)	502, 678, 972, 983
BsrFI	RCCGGY	3 cut(s)	706, 717, 746
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	3 cut(s)	706, 717, 746
BssECI	CCNNGG	2 cut(s)	520, 765
BssMI	GATC	3 cut(s)	105, 831, 1008
BssNI	GRCGYC	2 cut(s)	432, 762
Bst4CI	ACNGT	5 cut(s)	96, 205, 484, 803, 1126
Bst6I	CTCTTC	1 cut(s)	557
BstACI	GRCGYC	2 cut(s)	432, 762
BstAFI	CTTAAG	1 cut(s)	1046
BstBI	TTCGAA	1 cut(s)	1083
BstC8I	GCNNGC	3 cut(s)	264, 315, 719
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	2 cut(s)	520, 765
BstF5I	GGATG	1 cut(s)	1011
BstFNI	CGCG	3 cut(s)	399, 451, 522
BstH2I	RGCGCY	2 cut(s)	269, 478
BstHHI	GCGC	3 cut(s)	268, 451, 477
BstKTI	GATC	3 cut(s)	108, 834, 1011
BstMAI	GTCTC	4 cut(s)	211, 411, 601, 1130
BstMBI	GATC	3 cut(s)	105, 831, 1008
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 120, 247, 259, 274, 440, 506, 994
BstNSI	RCATGY	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	801
BstUI	CGCG	3 cut(s)	399, 451, 522
BstV1I	GCAGC	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	454, 478
BsuRI	GGCC	6 cut(s)	30, 37, 313, 419, 642, 869
BtgI	CCRYGG	2 cut(s)	520, 765
BtgZI	GCGATG	1 cut(s)	490
BtrI	CACGTC	2 cut(s)	652, 714
BtsCI	GGATG	1 cut(s)	1011
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	3 cut(s)	264, 315, 719
CfoI	GCGC	3 cut(s)	268, 451, 477
Cfr10I	RCCGGY	3 cut(s)	706, 717, 746
Cfr13I	GGNCC	4 cut(s)	312, 374, 417, 640
Cfr42I	CCGCGG	1 cut(s)	523
CseI	GACGC	4 cut(s)	440, 440, 548, 770
Csp6I	GTAC	4 cut(s)	12, 97, 517, 532
CviAII	CATG	5 cut(s)	88, 492, 514, 1052, 1071
CviQI	GTAC	4 cut(s)	12, 97, 517, 532
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	3 cut(s)	107, 833, 1010
DpnII	GATC	3 cut(s)	105, 831, 1008
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EciI	GGCGGA	2 cut(s)	110, 352
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	263
FaeI	CATG	5 cut(s)	91, 495, 517, 1055, 1074
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	5 cut(s)	87, 491, 513, 1051, 1070
FauI	CCCGC	3 cut(s)	226, 322, 351
FbaI	TGATCA	1 cut(s)	831
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	6 cut(s)	22, 251, 254, 435, 510, 523
FokI	GGATG	1 cut(s)	1018
Fsp4HI	GCNGC	6 cut(s)	22, 251, 254, 435, 510, 523
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	3 cut(s)	267, 450, 476
GluI	GCNGC	6 cut(s)	22, 251, 254, 435, 510, 523
GsaI	CCCAGC	1 cut(s)	1016
HaeII	RGCGCY	2 cut(s)	269, 478
HaeIII	GGCC	6 cut(s)	30, 37, 313, 419, 642, 869
HapII	CCGG	3 cut(s)	707, 718, 747
HgaI	GACGC	4 cut(s)	440, 440, 548, 770
HhaI	GCGC	3 cut(s)	268, 451, 477
Hin1I	GRCGYC	2 cut(s)	432, 762
Hin1II	CATG	5 cut(s)	91, 495, 517, 1055, 1074
Hin6I	GCGC	3 cut(s)	266, 449, 475
HinP1I	GCGC	3 cut(s)	266, 449, 475
HincII	GTYRAC	2 cut(s)	649, 1129
HindII	GTYRAC	2 cut(s)	649, 1129
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	3 cut(s)	353, 809, 971
HpaI	GTTAAC	1 cut(s)	1129
HpaII	CCGG	3 cut(s)	707, 718, 747
HphI	GGTGA	6 cut(s)	165, 201, 472, 721, 770, 1196
Hpy166II	GTNNAC	3 cut(s)	649, 769, 1129
Hpy188I	TCNGA	1 cut(s)	1135
Hpy188III	TCNNGA	3 cut(s)	350, 844, 1203
Hpy8I	GTNNAC	3 cut(s)	649, 769, 1129
Hpy99I	CGWCG	4 cut(s)	307, 374, 434, 653
HpyAV	CCTTC	6 cut(s)	234, 376, 952, 1057, 1200, 1209
HpyCH4III	ACNGT	5 cut(s)	96, 205, 484, 803, 1126
HpyCH4IV	ACGT	3 cut(s)	530, 651, 713
HpyCH4V	TGCA	2 cut(s)	262, 495
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 120, 247, 259, 274, 440, 506, 994
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	3 cut(s)	530, 651, 713
Hsp92I	GRCGYC	2 cut(s)	432, 762
Hsp92II	CATG	5 cut(s)	91, 495, 517, 1055, 1074
HspAI	GCGC	3 cut(s)	266, 449, 475
KroI	GCCGGC	1 cut(s)	717
KroNI	GCCGGC	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	831
KspAI	GTTAAC	1 cut(s)	1129
KspI	CCGCGG	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	105, 831, 1008
LmnI	GCTCC	2 cut(s)	226, 304
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	2 cut(s)	249, 733
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	3 cut(s)	530, 651, 713
MaeIII	GTNAC	4 cut(s)	90, 452, 709, 758
MalI	GATC	3 cut(s)	107, 833, 1010
MbiI	CCGCTC	3 cut(s)	114, 221, 299
MboI	GATC	3 cut(s)	105, 831, 1008
MboII	GAAGA	6 cut(s)	256, 454, 478, 544, 931, 1072
MhlI	GDGCHC	1 cut(s)	801
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	4 cut(s)	604, 847, 856, 1037
MluNI	TGGCCA	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	3 cut(s)	152, 492, 600
Mox20I	TGGCCA	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	5 cut(s)	621, 1047, 1128, 1143, 1167
MslI	CAYNNNNRTG	1 cut(s)	633
Msp20I	TGGCCA	1 cut(s)	30
MspA1I	CMGCKG	2 cut(s)	241, 522
MspCI	CTTAAG	1 cut(s)	1046
MspI	CCGG	3 cut(s)	707, 718, 747
MvnI	CGCG	3 cut(s)	399, 451, 522
MwoI	GCNNNNNNNGC	8 cut(s)	27, 120, 247, 259, 274, 440, 506, 994
NaeI	GCCGGC	1 cut(s)	719
NdeII	GATC	3 cut(s)	105, 831, 1008
NgoMIV	GCCGGC	1 cut(s)	717
NlaIII	CATG	5 cut(s)	91, 495, 517, 1055, 1074
NmuCI	GTSAC	4 cut(s)	90, 452, 709, 758
NspI	RCATGY	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	1083
PaqCI	CACCTGC	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PdiI	GCCGGC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	809, 971
PkrI	GCNGC	6 cut(s)	23, 252, 255, 436, 511, 524
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PsiI	TTATAA	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	1012
PspPI	GGNCC	4 cut(s)	312, 374, 417, 640
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	4 cut(s)	13, 98, 518, 533
RsaNI	GTAC	4 cut(s)	12, 97, 517, 532
RseI	CAYNNNNRTG	1 cut(s)	633
SacII	CCGCGG	1 cut(s)	523
SalI	GTCGAC	1 cut(s)	647
SaqAI	TTAA	5 cut(s)	621, 1047, 1128, 1143, 1167
SatI	GCNGC	6 cut(s)	22, 251, 254, 435, 510, 523
Sau3AI	GATC	3 cut(s)	105, 831, 1008
Sau96I	GGNCC	4 cut(s)	312, 374, 417, 640
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	2 cut(s)	249, 733
Sfr303I	CCGCGG	1 cut(s)	523
SfuI	TTCGAA	1 cut(s)	1083
SgrAI	CRCCGGYG	1 cut(s)	706
SgrBI	CCGCGG	1 cut(s)	523
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	659, 1046
SmoI	CTYRAG	2 cut(s)	659, 1046
Sse9I	AATT	4 cut(s)	604, 847, 856, 1037
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	96, 205, 484, 803, 1126
TaiI	ACGT	3 cut(s)	533, 654, 716
TaqI	TCGA	6 cut(s)	179, 328, 356, 429, 648, 1083
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	4 cut(s)	604, 847, 856, 1037
TauI	GCSGC	5 cut(s)	253, 256, 437, 512, 525
TfiI	GAWTC	2 cut(s)	809, 971
Tru1I	TTAA	5 cut(s)	621, 1047, 1128, 1143, 1167
Tru9I	TTAA	5 cut(s)	621, 1047, 1128, 1143, 1167
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	4 cut(s)	90, 452, 709, 758
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	4 cut(s)	90, 452, 709, 758
TspDTI	ATGAA	1 cut(s)	963
TspGWI	ACGGA	2 cut(s)	291, 944
TspRI	CASTG	1 cut(s)	99
Vha464I	CTTAAG	1 cut(s)	1046
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	2 cut(s)	847, 856
XceI	RCATGY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	2 cut(s)	23, 1030
XmiI	GTMKAC	1 cut(s)	648
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.