Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003652.1

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3113

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 769 bp

gctgggttttctggtcatggccttctctacttcttgcctcttcctctctccaatctcagctctcaagattgactatgctaagaagactataagccgttggaagaatgatggaagggaacaaaggttcagtttttcacttcgaagtaataatactgcacttttaggtcaacagattgtgacggcaggagctcatctacacaaggactggagttttgttggtggttcaagagttactgtaacaccaaaacttgagatagccagtctgcatccaaaaagccccggagtatatgcatcatggttggcaagttctcaaatagctagcactgcttttactttgggaacagcagcggtactcccattttatggcgtcatggttcttgcacctaaagctgaactaactaaagcatctattgaaagcagtataccgtatatagtgcttggacttctctatgcttatctactattcctctcttggactccagaaacaattcgattgatttttgcaagtcaatactggctgcctgagctgcctgggattgcaaagatgttctcgaatgagatgacattagcttctgcgtggattcacttgttggttgttgatctctttgcagcaaggcaggtttatcatgatggaatggaaaacaaaatcgagacgcgacattcaatttccctttgtctgtttttctgccctattggaattcttactcatgtcattaccaaagcactgactaaaagtgctgaaaagtccagcacacacaaaatccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

255

Amino Acids

28.2

Weight (kDa)

9.42

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	108 - 236	3.5e-35	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	422
AccII	CGCG	1 cut(s)	656
AciI	CCGC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	697
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	3 cut(s)	226, 414, 664
AjnI	CCWGG	1 cut(s)	530
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	6 cut(s)	60, 189, 318, 390, 527, 570
AluI	AGCT	6 cut(s)	60, 189, 318, 390, 527, 570
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	645
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	4 cut(s)	345, 518, 527, 609
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
Asp700I	GAANNNNTTC	1 cut(s)	487
AsuC2I	CCSGG	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	140
AsuNHI	GCTAGC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	4 cut(s)	357, 505, 514, 621
BccI	CCATC	2 cut(s)	102, 624
BceAI	ACGGC	2 cut(s)	79, 196
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	1 cut(s)	319
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	4 cut(s)	346, 519, 528, 610
BlsI	GCNGC	4 cut(s)	347, 520, 529, 611
Bme1390I	CCNGG	2 cut(s)	280, 532
BmrFI	CCNGG	2 cut(s)	280, 532
BmsI	GCATC	3 cut(s)	275, 300, 414
BmtI	GCTAGC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	2 cut(s)	227, 463
Bpu10I	CCTNAGC	1 cut(s)	523
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	48, 270
BpuMI	CCSGG	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	278, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	3 cut(s)	210, 259, 519
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	278, 531
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	70, 514
BseNI	ACTGG	3 cut(s)	210, 259, 519
BseXI	GCAGC	4 cut(s)	357, 505, 514, 621
BseYI	CCCAGC	1 cut(s)	2
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	645
BsmBI	CGTCTC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	599
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	69, 515
BspFNI	CGCG	1 cut(s)	656
BspHI	TCATGA	1 cut(s)	626
BspMI	ACCTGC	1 cut(s)	608
BspOI	GCTAGC	1 cut(s)	322
BspT104I	TTCGAA	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	210, 259, 519
BssECI	CCNNGG	2 cut(s)	278, 531
BssMI	GATC	1 cut(s)	599
BssNAI	GTATAC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	367
Bst1107I	GTATAC	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	236, 427
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	367
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	56, 79, 523
BstF5I	GGATG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	1 cut(s)	602
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	1 cut(s)	599
BstMWI	GCNNNNNNNGC	4 cut(s)	324, 387, 524, 527
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	278, 530
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	4 cut(s)	357, 505, 514, 621
BstV2I	GAAGAC	1 cut(s)	90
BstZ17I	GTATAC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	322, 723
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	320
CciI	TCATGA	1 cut(s)	626
CseI	GACGC	2 cut(s)	356, 662
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	5 cut(s)	17, 295, 371, 627, 708
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	3 cut(s)	56, 79, 523
DpnI	GATC	1 cut(s)	601
DpnII	GATC	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	530
EcoT22I	ATGCAT	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	191
Esp3I	CGTCTC	1 cut(s)	645
FaeI	CATG	5 cut(s)	20, 298, 374, 630, 711
FatI	CATG	5 cut(s)	16, 294, 370, 626, 707
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	4 cut(s)	346, 519, 528, 610
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	4 cut(s)	346, 519, 528, 610
FspBI	CTAG	1 cut(s)	319
GluI	GCNGC	4 cut(s)	346, 519, 528, 610
GsaI	CCCAGC	1 cut(s)	6
GsuI	CTGGAG	2 cut(s)	227, 463
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	2 cut(s)	356, 662
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	5 cut(s)	20, 298, 374, 630, 711
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	476, 581
HpaII	CCGG	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	168, 423
Hpy188III	TCNNGA	6 cut(s)	65, 226, 480, 551, 627, 650
Hpy8I	GTNNAC	2 cut(s)	168, 423
HpyAV	CCTTC	2 cut(s)	32, 106
HpyCH4III	ACNGT	2 cut(s)	236, 427
HpyCH4V	TGCA	7 cut(s)	156, 266, 291, 381, 504, 540, 609
HpyF10VI	GCNNNNNNNGC	4 cut(s)	324, 387, 524, 527
HpyF3I	CTNAG	3 cut(s)	56, 79, 523
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	20, 298, 374, 630, 711
Kzo9I	GATC	1 cut(s)	599
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	4 cut(s)	357, 505, 514, 621
LweI	GCATC	3 cut(s)	275, 300, 414
MaeI	CTAG	1 cut(s)	319
MaeIII	GTNAC	3 cut(s)	176, 230, 236
MalI	GATC	1 cut(s)	601
MboI	GATC	1 cut(s)	599
MboII	GAAGA	3 cut(s)	32, 95, 113
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	487, 664, 697
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	3 cut(s)	48, 54, 477
Mph1103I	ATGCAT	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	2 cut(s)	280, 532
MvaI	CCWGG	1 cut(s)	532
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	4 cut(s)	324, 387, 524, 527
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	1 cut(s)	599
NheI	GCTAGC	1 cut(s)	318
NlaIII	CATG	5 cut(s)	20, 298, 374, 630, 711
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	140
PagI	TCATGA	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	4 cut(s)	347, 520, 529, 611
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	2
PspGI	CCWGG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	4 cut(s)	346, 519, 528, 610
Sau3AI	GATC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	2 cut(s)	280, 532
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	3 cut(s)	275, 300, 414
SfuI	TTCGAA	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	63, 249
SmoI	CTYRAG	2 cut(s)	63, 249
Sse9I	AATT	3 cut(s)	487, 664, 697
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	1 cut(s)	319
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	278, 530
TaaI	ACNGT	2 cut(s)	236, 427
TaqI	TCGA	4 cut(s)	140, 491, 552, 649
TasI	AATT	3 cut(s)	487, 664, 697
TfiI	GAWTC	1 cut(s)	581
TscAI	CASTG	2 cut(s)	329, 730
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	4 cut(s)	345, 518, 527, 609
Tsp45I	GTSAC	1 cut(s)	176
TspRI	CASTG	2 cut(s)	329, 730
Van91I	CCANNNNNTGG	1 cut(s)	363
XapI	RAATTY	1 cut(s)	697
XmiI	GTMKAC	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.