Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003711.1

Orthogroup ID

OG0006688

Physical Location & Seq

Genomic Coordinates Reverse (-)

102083 .. 110376

Gene Structure 8294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

atgaggcggagagcggcggacttccggcggccattgagggccagaaggtttcccaatgcgttttggtgggttctgtgtggggttgcagtgttgctgtttatctatactttgagcagaggcactcagattgaatccagacctgtaatagccacaagatataggcatgatagagttatggaaggcctgaacattactgaagaaatgttgagccccaactcagtcaccaggcagatcagtgaccaaatagctctggcaaaagcttttgttgtgattgccaaagagagcaacaaccttcagtttgcttgggaattaagtgcccagatccgcaactcacagattctgctgtcaaatgctgcgacaaggaggcctttgacagccagagaatcagaaactgcaatccgtgatatggcacttgtactgtaccaagcacagctgctccattacgatagtgcaaccatgattatgagacttaaagccaaaatacaatctctggaagaacagatgagttctgtgagtgagaaaagttccaagtatggacagatagctgccgaggaagtcccgaaaagtctttactgccttgggggccgctttaaggatctcattgttgccggtcatccatcattgggtgcattgaccatgatcgctttgaagaaggtcggctttttctggcagcaccactgctccactaaggctcagtctgaatctgaaatagcagttgctgctagcccagtggagccattgaggaggaacccaccaagaactgcacgtcgtgacgtgaagctgcacaatggtcttgagggtcatttagtggagcatcgacaattgggggctcacatacgtcctgtccttgtgcaagagcagcgggtgaaggaatcaaaacctattaaagtgcatttgaagaagttccccactggtcgagttttatgcttcaggtctgaacgtactctgcaggaagcgttatcagcagaacgcactactttgcttccattagctgatgcgctttcagcagggggccgctttaaggatctcattgttgccggtcatccatcattgggtgcattgaccatgatcgctttgaagaaggtcggctttttctggcagcaccactgctccactaaggctcagtctgaatctgaaatagcagttgctgctagcccagctcacatacgtcctgtccttgtgcaagagcagcgggtgaaggaatcaaaacctattaaagtgcatttgaagaagttccccactggtcgagttttatgcttcaggtctgaacgtactctgcaggaagcgttatcagcagaacgcactactttggcttctttttttcctttttttttcttttcattaactaacggttgttttggtcagcttccattagctgatgcgctttcagcagggggccgctttaaggatctcattgttgccggtcatccatcattgggtgcattgaccatgatcgctttgaagaaggtcgtctttttctggcagcaccactgctccactaaggctcagtctgaatctgaaatagcagttgctgctagcccagtggagccattgaggaggaacccaccaagaactgcacgtcgtgacgtgaagctgcacaatggtcttgagggtcatttagtggagcatcgacaattggaggctcacatacgtcctgtccttgtgcaagagcagcgggtgaaggaatcaaaaccaattaaagtgcatttgaagaagttccccactggtcgagttttatgcttcaggtctgaacgtactctgcaggaagcgttatcagcagaacgcactactttgcttccattagctgatgcgctttcagcagggggacgctttaaggatctcattgttgccggtcatccatcattgggtgcattgaccatgatcgctttgaagaaggtcgtctttttctggcagcaccactactccactaagacgccagttgctgctgctattctggctgcaagggatcgttgtcagttcgctaatccaaaggatcccaatccagcggaatatgcaccggttttgggttctttgttgaatgcggtgggtcatctttgggctctacttgctgtcgagaattccctaagtttggatgacatcctcaagctgtcaaagatagggatctcggagtgggcagcctcaagaagtggtgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

718

Amino Acids

79.95

Weight (kDa)

10.03

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAUT_1	PF25557	72 - 145	3.7e-09	Galacturonosyltransferase domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20810
fragaria_vesca	FvH4_6g44800
malus_domestica	MD09G1093100.v1.1 MD17G1083200.v1.1
prunus_persica	Prupe.3G232100_v2.0.a1
pyrus_communis	pycom09g01830 pycom17g08100
rosa_chinensis	RchiOBHm_Chr2g0161971 RchiOBHm_Chr6g0254251
rosa_laevigata	RLG00000014931 RLG00000021312
rosa_multiflora	Rmu_sc0003711.1_g000023 Rmu_sc0008428.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088430 Rroxscaffold_7G00211000 Rroxscaffold_7G00211020
rosa_rugosa	Rorug02G0493700
rosa_samantha	Rh2AG559600 Rh2BG573000 Rh2CG543100 Rh2DG582800 Rh6AG067500 Rh6BG060600 Rh6DG057600
rosa_wichuraiana	Rw2G046310 Rw6G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	14
AclWI	GGATC	9 cut(s)	316, 603, 1032, 1416, 1845, 1974, 1988, 2001, 2129
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	2077
AcuI	CTGAAG	5 cut(s)	216, 278, 913, 1243, 1726
AcyI	GRCGYC	1 cut(s)	1934
AdeI	CACNNNGTG	2 cut(s)	770, 1583
AfaI	GTAC	5 cut(s)	417, 422, 943, 1273, 1756
AgeI	ACCGGT	1 cut(s)	2017
AgsI	TTSAA	9 cut(s)	131, 649, 898, 1078, 1228, 1462, 1711, 1891, 2038
AjiI	CACGTC	4 cut(s)	767, 775, 1580, 1588
AjnI	CCWGG	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	9 cut(s)	316, 603, 1032, 1416, 1845, 1974, 1988, 2001, 2129
AlwNI	CAGNNNCTG	6 cut(s)	340, 392, 719, 1148, 1532, 1943
AoxI	GGCC	7 cut(s)	29, 39, 181, 365, 583, 1012, 1396
ApoI	RAATTY	1 cut(s)	2077
AsiGI	ACCGGT	1 cut(s)	2017
Asp700I	GAANNNNTTC	3 cut(s)	902, 1232, 1715
AspLEI	GCGC	3 cut(s)	1000, 1384, 1813
AspS9I	GGNCC	4 cut(s)	39, 583, 1012, 1396
AsuHPI	GGTGA	4 cut(s)	214, 877, 1207, 1690
AsuNHI	GCTAGC	3 cut(s)	722, 1151, 1535
BaeGI	GKGCMC	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	1993
BanII	GRGCYC	3 cut(s)	212, 832, 2062
BccI	CCATC	4 cut(s)	625, 1054, 1438, 1867
BcgI	CGANNNNNNTGC	6 cut(s)	906, 940, 1236, 1270, 1719, 1753
BciT130I	CCWGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	3 cut(s)	723, 1152, 1536
BfmI	CTRYAG	3 cut(s)	947, 1277, 1760
BglI	GCCNNNNNGGC	1 cut(s)	582
Bme1390I	CCNGG	1 cut(s)	226
BmgBI	CACGTC	4 cut(s)	767, 775, 1580, 1588
BmgT120I	GGNCC	4 cut(s)	39, 583, 1012, 1396
BmiI	GGNNCC	8 cut(s)	584, 735, 749, 1013, 1397, 1548, 1562, 1995
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	2 cut(s)	722, 1535
BmsI	GCATC	5 cut(s)	823, 985, 1369, 1636, 1798
BmtI	GCTAGC	3 cut(s)	726, 1155, 1539
BmuI	ACTGGG	2 cut(s)	722, 1535
BpuEI	CTTGAG	4 cut(s)	815, 1628, 2087, 2125
BsaBI	GATNNNNATC	2 cut(s)	1998, 2120
BsaHI	GRCGYC	1 cut(s)	1934
BsaJI	CCNNGG	2 cut(s)	549, 577
BsaWI	WCCGGW	1 cut(s)	2017
Bse118I	RCCGGY	5 cut(s)	608, 1037, 1421, 1850, 2017
Bse1I	ACTGG	6 cut(s)	728, 916, 1246, 1541, 1729, 1937
Bse8I	GATNNNNATC	2 cut(s)	1998, 2120
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	549, 577
BseGI	GGATG	6 cut(s)	613, 1042, 1426, 1855, 2097, 2098
BseJI	GATNNNNATC	2 cut(s)	1998, 2120
BseMII	CTCAG	5 cut(s)	137, 231, 707, 1136, 1520
BseNI	ACTGG	6 cut(s)	728, 916, 1246, 1541, 1729, 1937
BseRI	GAGGAG	2 cut(s)	757, 1570
BseSI	GKGCMC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	1156
BsgI	GTGCAG	4 cut(s)	747, 767, 1560, 1580
BshFI	GGCC	7 cut(s)	31, 41, 183, 367, 585, 1014, 1398
BshTI	ACCGGT	1 cut(s)	2017
BsiSI	CCGG	6 cut(s)	25, 609, 1038, 1422, 1851, 2018
BslFI	GGGAC	2 cut(s)	542, 1839
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	2 cut(s)	542, 1839
BsmI	GAATGC	1 cut(s)	2044
BsnI	GGCC	7 cut(s)	31, 41, 183, 367, 585, 1014, 1398
Bsp1286I	GDGCHC	4 cut(s)	212, 319, 832, 2062
BspANI	GGCC	7 cut(s)	31, 41, 183, 367, 585, 1014, 1398
BspCNI	CTCAG	5 cut(s)	136, 230, 706, 1135, 1519
BspLI	GGNNCC	8 cut(s)	584, 735, 749, 1013, 1397, 1548, 1562, 1995
BspMAI	CTGCAG	3 cut(s)	951, 1281, 1764
BspOI	GCTAGC	3 cut(s)	726, 1155, 1539
BspPI	GGATC	9 cut(s)	316, 603, 1032, 1416, 1845, 1974, 1988, 2001, 2129
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	5 cut(s)	608, 1037, 1421, 1850, 2017
BsrI	ACTGG	6 cut(s)	728, 916, 1246, 1541, 1729, 1937
BssAI	RCCGGY	5 cut(s)	608, 1037, 1421, 1850, 2017
BssECI	CCNNGG	2 cut(s)	549, 577
BssNI	GRCGYC	1 cut(s)	1934
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	420, 1352
BstACI	GRCGYC	1 cut(s)	1934
BstAPI	GCANNNNNTGC	3 cut(s)	719, 1148, 1532
BstC8I	GCNNGC	3 cut(s)	724, 1153, 1537
BstF5I	GGATG	6 cut(s)	613, 1042, 1426, 1855, 2097, 2098
BstHHI	GCGC	3 cut(s)	1000, 1384, 1813
BstMAI	GTCTC	1 cut(s)	460
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	3 cut(s)	947, 1277, 1760
BstSLI	GKGCMC	1 cut(s)	319
BstX2I	RGATCY	7 cut(s)	321, 595, 1024, 1408, 1837, 1993, 2121
BstYI	RGATCY	7 cut(s)	321, 595, 1024, 1408, 1837, 1993, 2121
BsuRI	GGCC	7 cut(s)	31, 41, 183, 367, 585, 1014, 1398
BtrI	CACGTC	4 cut(s)	767, 775, 1580, 1588
BtsCI	GGATG	6 cut(s)	613, 1042, 1426, 1855, 2097, 2098
BtsI	GCAGTG	4 cut(s)	93, 676, 1105, 1489
Cac8I	GCNNGC	3 cut(s)	724, 1153, 1537
CaiI	CAGNNNCTG	6 cut(s)	340, 392, 719, 1148, 1532, 1943
CfoI	GCGC	3 cut(s)	1000, 1384, 1813
Cfr10I	RCCGGY	5 cut(s)	608, 1037, 1421, 1850, 2017
Cfr13I	GGNCC	4 cut(s)	39, 583, 1012, 1396
CseI	GACGC	2 cut(s)	1836, 1942
Csp6I	GTAC	5 cut(s)	416, 421, 942, 1272, 1755
CspAI	ACCGGT	1 cut(s)	2017
CviAII	CATG	6 cut(s)	164, 457, 637, 1066, 1450, 1879
CviQI	GTAC	5 cut(s)	416, 421, 942, 1272, 1755
DraIII	CACNNNGTG	2 cut(s)	770, 1583
EaeI	YGGCCR	1 cut(s)	29
EciI	GGCGGA	2 cut(s)	22, 32
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	2 cut(s)	183, 367
Eco24I	GRGCYC	3 cut(s)	212, 832, 2062
Eco57I	CTGAAG	5 cut(s)	216, 278, 913, 1243, 1726
EcoRI	GAATTC	1 cut(s)	2077
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	3 cut(s)	212, 832, 2062
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	6 cut(s)	167, 460, 640, 1069, 1453, 1882
FaqI	GGGAC	2 cut(s)	542, 1839
FatI	CATG	6 cut(s)	163, 456, 636, 1065, 1449, 1878
FauI	CCCGC	3 cut(s)	855, 1185, 1668
FokI	GGATG	6 cut(s)	600, 1029, 1413, 1842, 2084, 2105
FriOI	GRGCYC	3 cut(s)	212, 832, 2062
FspBI	CTAG	3 cut(s)	723, 1152, 1536
GlaI	GCGC	3 cut(s)	999, 1383, 1812
GsaI	CCCAGC	1 cut(s)	1160
HaeIII	GGCC	7 cut(s)	31, 41, 183, 367, 585, 1014, 1398
HapII	CCGG	6 cut(s)	25, 609, 1038, 1422, 1851, 2018
HgaI	GACGC	2 cut(s)	1836, 1942
HhaI	GCGC	3 cut(s)	1000, 1384, 1813
Hin1I	GRCGYC	1 cut(s)	1934
Hin1II	CATG	6 cut(s)	167, 460, 640, 1069, 1453, 1882
Hin6I	GCGC	3 cut(s)	998, 1382, 1811
HinP1I	GCGC	3 cut(s)	998, 1382, 1811
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	9 cut(s)	131, 337, 383, 701, 872, 1130, 1202, 1514, 1685
HpaII	CCGG	6 cut(s)	25, 609, 1038, 1422, 1851, 2018
HphI	GGTGA	4 cut(s)	214, 877, 1207, 1690
Hpy188III	TCNNGA	9 cut(s)	135, 491, 559, 770, 794, 1583, 1607, 2074, 2142
Hpy99I	CGWCG	2 cut(s)	771, 1584
HpyCH4III	ACNGT	2 cut(s)	420, 1352
Hsp92I	GRCGYC	1 cut(s)	1934
Hsp92II	CATG	6 cut(s)	167, 460, 640, 1069, 1453, 1882
HspAI	GCGC	3 cut(s)	998, 1382, 1811
LmnI	GCTCC	8 cut(s)	441, 686, 733, 811, 1115, 1499, 1546, 1624
LweI	GCATC	5 cut(s)	823, 985, 1369, 1636, 1798
MaeI	CTAG	3 cut(s)	723, 1152, 1536
MaeIII	GTNAC	4 cut(s)	220, 236, 770, 1583
MbiI	CCGCTC	1 cut(s)	14
MboII	GAAGA	9 cut(s)	209, 506, 661, 910, 1090, 1240, 1474, 1723, 1903
MfeI	CAATTG	2 cut(s)	821, 1634
MflI	RGATCY	7 cut(s)	321, 595, 1024, 1408, 1837, 1993, 2121
MhlI	GDGCHC	4 cut(s)	212, 319, 832, 2062
MluCI	AATT	5 cut(s)	308, 821, 1634, 1695, 2077
MroXI	GAANNNNTTC	3 cut(s)	902, 1232, 1715
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	5 cut(s)	433, 862, 1192, 1675, 2006
MspI	CCGG	6 cut(s)	25, 609, 1038, 1422, 1851, 2018
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	2 cut(s)	821, 1634
Mva1269I	GAATGC	1 cut(s)	2044
MvaI	CCWGG	1 cut(s)	226
NheI	GCTAGC	3 cut(s)	722, 1151, 1535
NlaIII	CATG	6 cut(s)	167, 460, 640, 1069, 1453, 1882
NlaIV	GGNNCC	8 cut(s)	584, 735, 749, 1013, 1397, 1548, 1562, 1995
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	4 cut(s)	220, 236, 770, 1583
PceI	AGGCCT	2 cut(s)	183, 367
PctI	GAATGC	1 cut(s)	2044
PdmI	GAANNNNTTC	3 cut(s)	902, 1232, 1715
PfeI	GAWTC	9 cut(s)	131, 337, 383, 701, 872, 1130, 1202, 1514, 1685
PinAI	ACCGGT	1 cut(s)	2017
Psp6I	CCWGG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	1156
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	8 cut(s)	584, 735, 749, 1013, 1397, 1548, 1562, 1995
PspPI	GGNCC	4 cut(s)	39, 583, 1012, 1396
PstI	CTGCAG	3 cut(s)	951, 1281, 1764
PstNI	CAGNNNCTG	6 cut(s)	340, 392, 719, 1148, 1532, 1943
PsuI	RGATCY	7 cut(s)	321, 595, 1024, 1408, 1837, 1993, 2121
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	5 cut(s)	417, 422, 943, 1273, 1756
RsaNI	GTAC	5 cut(s)	416, 421, 942, 1272, 1755
RseI	CAYNNNNRTG	1 cut(s)	461
Sau96I	GGNCC	4 cut(s)	39, 583, 1012, 1396
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	4 cut(s)	212, 319, 832, 2062
SfaNI	GCATC	5 cut(s)	823, 985, 1369, 1636, 1798
SfcI	CTRYAG	3 cut(s)	947, 1277, 1760
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	4 cut(s)	794, 1607, 2102, 2140
SmoI	CTYRAG	4 cut(s)	794, 1607, 2102, 2140
Sse9I	AATT	5 cut(s)	308, 821, 1634, 1695, 2077
SseBI	AGGCCT	2 cut(s)	183, 367
SspMI	CTAG	3 cut(s)	723, 1152, 1536
StuI	AGGCCT	2 cut(s)	183, 367
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	420, 1352
TaqI	TCGA	6 cut(s)	817, 916, 1246, 1630, 1729, 2073
TasI	AATT	5 cut(s)	308, 821, 1634, 1695, 2077
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	5 cut(s)	17, 31, 588, 1017, 1401
TfiI	GAWTC	9 cut(s)	131, 337, 383, 701, 872, 1130, 1202, 1514, 1685
TseFI	GTSAC	4 cut(s)	220, 236, 770, 1583
Tsp45I	GTSAC	4 cut(s)	220, 236, 770, 1583
TspDTI	ATGAA	1 cut(s)	1329
TspGWI	ACGGA	1 cut(s)	389
XapI	RAATTY	1 cut(s)	2077
XmnI	GAANNNNTTC	3 cut(s)	902, 1232, 1715
XspI	CTAG	3 cut(s)	723, 1152, 1536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.