Rmu_sc0004020.1_g000037

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004020.1
OG0012463
Physical Location & Seq
Forward (+)
179041 .. 181943
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2178 bp
atggtagggttcacccctgaagtagacctcgatcaagcttcaaagctcaagctttcaaaggacccacctgacgccgttgatcccagacccatcgacttgtcctttgtagattccttgttggattttgactccattgagacttggttcagggattttccaaacccagatatggccgaggccgggacgacgactgtggtgaaatccgagccaattgactctgagcctggttctgtggtgaaggtgaagtctgaggtaggtggtggaggccaaatcgttaatgggtccgaacccattgattgtgggcttgctggtgtggtgaacgtgaagtctgaagtttcagaaaatttgaggagttctattgaggaagagttggggaaggttagtttggttggagggaatgaagagagtttggttcttggtagtgggaatggagtgggtgaggatttggagaccaaaatcgaaggtgtggagggcaaaatggagagtgggattgagagcgaaagttcggagtcggagagtgagagtgagagttcatcagcagcatcatcttcttcgagtagtagctctagtgacgaggaggaggagagagtgagtgatgatatggatgaggagaaggatggagaagggaatgtgaaggcggaagcggagaaggagggcaatgaggaggcttgtgaacttgaagaaggtgagataagtggtgcagagcagataggtaatggaagtggtgatgaggacgatgaggagggcgccgaggttgcgtggagtgatgttgatattttcgatgagggagacgaggaagaggaagctataaaaggtcccattcgttccaaaaatgagctcgaggaacttccaccagttcctccagttaatgtgaccttggaaccacatcatcaaatgcttcctgtcggggttgttttatcggttgttggtaccaaagtcattgtagaaggggttgagaagcacaaccctctgaatgagggttctattctgtggataactgaaagcaggtctccattgggactggtagatgaaatttttggacctgtcataaacccttactatatggtgagatacaatacagaaagtgaaatccctgccggtatagaagttggaacaccaatctcttttgttcaggagtttgcagatcatgtgctcaataacaaagatctttacagaaagggttatgatgcatctggtgcgaatgatgaagaggtatcagatgaagcagaattttcagatgatgaaaaagaagctgaatacaagagactgcaaaaaatgacaaagaggggaatgaatgaccagaatgccggcagtaagaaaaacaacagaaaaagaggtaaaaataagatgggtccctggaaaaatggtcaatcttcaccccagcaaacacctcccaatcaacaccacgagcatctctcttcagctgcacttgctcgtcgttatggcccatcttcttctgcagtctcacaaggtttggttagtgggcgtggatcagttcgaccatttccaggtgctgcacaggccactggtatgaacacaaatggggtttggtcaaatggaatgccgtgtcagccacagcaaacacccttccctaatgcatttccaaataataatatgccattttttccacagtaccctcatcagatgtctgtgccgggcggaattccattccatcagcagacaaatgtattttctggacccatgggttcacaagggatgatgggtcaacttggcttccaccaaccagcatttggagtaggtttccagggacaacctacaccaggtcaacagttgaattcctttccaggacccatgaatgcatttgggatgagtcaacagggtcaacatgggttcaaccaaaatgcatttgggatgggtcaacagggattcaacccaaatgtttttggggtaggtcaacagggtcaacatggcttcaacccaaatgcgtttgcgatagttcaacagggtcagcatggcttcaaccaaaatacattcgggataggctcacagggtcaacctacaaacctaagcttagaacagaatatgccacaacctgggaacccggttgtaggtgatactgacgctccccaacaatttagtcgaagtacatctgctaatcgtggaagaagaccatttcgtcgagggggtcgtcagggaagaggaagaggttctaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

725

Amino Acids

77.79

Weight (kDa)

4.53

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 300 - 381 6e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2136
Acc36I ACCTGC 1 cut(s) 996
Acc65I GGTACC 1 cut(s) 929
AccB1I GGYRCC 2 cut(s) 746, 929
AccB7I CCANNNNNTGG 2 cut(s) 1751, 2054
AccI GTMKAC 1 cut(s) 24
AciI CCGC 3 cut(s) 638, 644, 1659
AclWI GGATC 2 cut(s) 74, 1498
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 5 cut(s) 343, 1032, 1229, 1662, 1795
AcuI CTGAAG 3 cut(s) 39, 351, 1404
AcyI GRCGYC 2 cut(s) 72, 747
AfaI GTAC 3 cut(s) 931, 1634, 2107
AfiI CCNNNNNNNGG 7 cut(s) 169, 180, 1508, 1751, 1781, 2054, 2069
AgsI TTSAA 9 cut(s) 42, 57, 680, 1795, 1855, 1891, 1936, 1961, 1981
AjnI CCWGG 7 cut(s) 223, 1355, 1507, 1764, 1780, 1804, 2053
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 9 cut(s) 38, 46, 52, 564, 806, 838, 1253, 1424, 2031
AluI AGCT 9 cut(s) 38, 46, 52, 564, 806, 838, 1253, 1424, 2031
Alw21I GWGCWC 2 cut(s) 840, 1155
Alw26I GTCTC 6 cut(s) 131, 443, 783, 1014, 1258, 1468
AlwI GGATC 2 cut(s) 74, 1498
AlwNI CAGNNNCTG 1 cut(s) 1514
Ama87I CYCGRG 1 cut(s) 839
AoxI GGCC 5 cut(s) 171, 177, 265, 1444, 1521
ApeKI GCWGC 3 cut(s) 539, 1424, 1514
ApoI RAATTY 5 cut(s) 343, 1032, 1229, 1662, 1795
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 2167
Asp718I GGTACC 1 cut(s) 929
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 8 cut(s) 61, 282, 815, 1040, 1352, 1445, 1697, 1808
AsuC2I CCSGG 3 cut(s) 181, 1656, 2063
AvaI CYCGRG 1 cut(s) 839
AvaII GGWCC 7 cut(s) 61, 282, 815, 1040, 1352, 1697, 1808
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BanI GGYRCC 2 cut(s) 746, 929
BanII GRGCYC 1 cut(s) 840
BauI CACGAG 1 cut(s) 1406
BbsI GAAGAC 1 cut(s) 2134
Bbv12I GWGCWC 2 cut(s) 840, 1155
BbvI GCAGC 3 cut(s) 551, 1411, 1501
BccI CCATC 7 cut(s) 98, 611, 1342, 1456, 1680, 1714, 1867
BceAI ACGGC 2 cut(s) 59, 1549
BciT130I CCWGG 7 cut(s) 225, 1357, 1509, 1766, 1782, 1806, 2055
BcnI CCSGG 3 cut(s) 181, 1656, 2063
BcoDI GTCTC 6 cut(s) 131, 443, 783, 1014, 1258, 1468
BfaI CTAG 2 cut(s) 567, 2172
BfmI CTRYAG 1 cut(s) 1458
BfoI RGCGCY 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 996
BglII AGATCT 1 cut(s) 1165
BisI GCNGC 3 cut(s) 540, 1425, 1515
BlsI GCNGC 3 cut(s) 541, 1426, 1516
Bme18I GGWCC 7 cut(s) 61, 282, 815, 1040, 1352, 1697, 1808
BmeT110I CYCGRG 1 cut(s) 839
BmgT120I GGNCC 8 cut(s) 61, 282, 815, 1040, 1352, 1445, 1697, 1808
BmsI GCATC 4 cut(s) 551, 1177, 1199, 1420
BpiI GAAGAC 1 cut(s) 2134
BplI GAGNNNNNCTC 2 cut(s) 1400, 1432
BpmI CTGGAG 1 cut(s) 846
Bpu10I CCTNAGC 1 cut(s) 2027
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 181, 1656, 2063
BsaHI GRCGYC 2 cut(s) 72, 747
BsaI GGTCTC 2 cut(s) 443, 1014
BsaJI CCNNGG 7 cut(s) 174, 750, 876, 1355, 1701, 1765, 2054
BsaXI ACNNNNNCTCC 2 cut(s) 2068, 2098
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 180, 1508, 1751, 1781, 2054, 2069
Bse118I RCCGGY 2 cut(s) 1097, 1307
Bse1I ACTGG 4 cut(s) 854, 863, 1026, 1531
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 7 cut(s) 225, 1357, 1509, 1766, 1782, 1806, 2055
BseDI CCNNGG 7 cut(s) 174, 750, 876, 1355, 1701, 1765, 2054
BseGI GGATG 5 cut(s) 610, 622, 1722, 1833, 1878
BseLI CCNNNNNNNGG 7 cut(s) 169, 180, 1508, 1751, 1781, 2054, 2069
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 2 cut(s) 210, 240
BseNI ACTGG 4 cut(s) 854, 863, 1026, 1531
BseRI GAGGAG 7 cut(s) 364, 590, 593, 596, 623, 677, 755
BseXI GCAGC 3 cut(s) 551, 1411, 1501
BseYI CCCAGC 1 cut(s) 1380
BsgI GTGCAG 3 cut(s) 720, 1410, 1500
BshFI GGCC 5 cut(s) 173, 179, 267, 1446, 1523
BshNI GGYRCC 2 cut(s) 746, 929
BsiHKAI GWGCWC 2 cut(s) 840, 1155
BsiHKCI CYCGRG 1 cut(s) 839
BsiSI CCGG 5 cut(s) 180, 1098, 1308, 1655, 2063
BslFI GGGAC 5 cut(s) 196, 801, 1032, 1338, 1782
BslI CCNNNNNNNGG 7 cut(s) 169, 180, 1508, 1751, 1781, 2054, 2069
BsmAI GTCTC 6 cut(s) 131, 443, 783, 1014, 1258, 1468
BsmBI CGTCTC 1 cut(s) 783
BsmFI GGGAC 5 cut(s) 196, 801, 1032, 1338, 1782
BsmI GAATGC 3 cut(s) 1309, 1566, 1822
BsnI GGCC 5 cut(s) 173, 179, 267, 1446, 1523
Bso31I GGTCTC 2 cut(s) 443, 1014
BsoBI CYCGRG 1 cut(s) 839
Bsp1286I GDGCHC 2 cut(s) 840, 1155
Bsp143I GATC 5 cut(s) 31, 79, 1144, 1165, 1490
Bsp19I CCATGG 1 cut(s) 1701
BspACI CCGC 3 cut(s) 638, 644, 1659
BspANI GGCC 5 cut(s) 173, 179, 267, 1446, 1523
BspCNI CTCAG 2 cut(s) 211, 241
BspMAI CTGCAG 1 cut(s) 1462
BspMI ACCTGC 1 cut(s) 996
BspPI GGATC 2 cut(s) 74, 1498
BspT107I GGYRCC 2 cut(s) 746, 929
BspTNI GGTCTC 2 cut(s) 443, 1014
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 2 cut(s) 1097, 1307
BsrI ACTGG 4 cut(s) 854, 863, 1026, 1531
BssAI RCCGGY 2 cut(s) 1097, 1307
BssECI CCNNGG 7 cut(s) 174, 750, 876, 1355, 1701, 1765, 2054
BssMI GATC 5 cut(s) 31, 79, 1144, 1165, 1490
BssNI GRCGYC 2 cut(s) 72, 747
BssSI CACGAG 1 cut(s) 1406
BssT1I CCWWGG 2 cut(s) 876, 1701
Bst2BI CACGAG 1 cut(s) 1406
Bst2UI CCWGG 7 cut(s) 225, 1357, 1509, 1766, 1782, 1806, 2055
Bst4CI ACNGT 3 cut(s) 193, 1632, 1791
Bst6I CTCTTC 7 cut(s) 360, 396, 792, 1203, 1423, 2152, 2158
BstACI GRCGYC 2 cut(s) 72, 747
BstAPI GCANNNNNTGC 1 cut(s) 1196
BstC8I GCNNGC 2 cut(s) 306, 1309
BstDEI CTNAG 4 cut(s) 219, 249, 2027, 2032
BstDSI CCRYGG 1 cut(s) 1701
BstENI CCTNNNNNAGG 1 cut(s) 1779
BstF5I GGATG 5 cut(s) 610, 622, 1722, 1833, 1878
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 5 cut(s) 34, 82, 1147, 1168, 1493
BstMAI GTCTC 6 cut(s) 131, 443, 783, 1014, 1258, 1468
BstMBI GATC 5 cut(s) 31, 79, 1144, 1165, 1490
BstMWI GCNNNNNNNGC 5 cut(s) 755, 1196, 1430, 1520, 1570
BstNI CCWGG 7 cut(s) 225, 1357, 1509, 1766, 1782, 1806, 2055
BstSFI CTRYAG 1 cut(s) 1458
BstV1I GCAGC 3 cut(s) 551, 1411, 1501
BstV2I GAAGAC 1 cut(s) 2134
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
BsuRI GGCC 5 cut(s) 173, 179, 267, 1446, 1523
BtgI CCRYGG 1 cut(s) 1701
BtsCI GGATG 5 cut(s) 610, 622, 1722, 1833, 1878
BtsIMutI CAGTG 1 cut(s) 1524
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 2 cut(s) 306, 1309
CaiI CAGNNNCTG 1 cut(s) 1514
CfoI GCGC 1 cut(s) 749
Cfr10I RCCGGY 2 cut(s) 1097, 1307
Cfr13I GGNCC 8 cut(s) 61, 282, 815, 1040, 1352, 1445, 1697, 1808
CseI GACGC 2 cut(s) 80, 2090
CsiI ACCWGGT 1 cut(s) 1780
Csp6I GTAC 3 cut(s) 930, 1633, 2106
CviAII CATG 6 cut(s) 1148, 1702, 1813, 1847, 1928, 1973
CviQI GTAC 3 cut(s) 930, 1633, 2106
DdeI CTNAG 4 cut(s) 219, 249, 2027, 2032
DinI GGCGCC 1 cut(s) 748
DpnI GATC 5 cut(s) 33, 81, 1146, 1167, 1492
DpnII GATC 5 cut(s) 31, 79, 1144, 1165, 1490
DrdI GACNNNNNNGTC 1 cut(s) 2136
DseDI GACNNNNNNGTC 1 cut(s) 2136
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 7 cut(s) 360, 396, 792, 1203, 1423, 2152, 2158
EarI CTCTTC 7 cut(s) 360, 396, 792, 1203, 1423, 2152, 2158
EciI GGCGGA 2 cut(s) 653, 1674
Ecl136II GAGCTC 1 cut(s) 838
Eco130I CCWWGG 2 cut(s) 876, 1701
Eco24I GRGCYC 1 cut(s) 840
Eco31I GGTCTC 2 cut(s) 443, 1014
Eco47I GGWCC 7 cut(s) 61, 282, 815, 1040, 1352, 1697, 1808
Eco53kI GAGCTC 1 cut(s) 838
Eco57I CTGAAG 3 cut(s) 39, 351, 1404
Eco88I CYCGRG 1 cut(s) 839
EcoICRI GAGCTC 1 cut(s) 838
EcoNI CCTNNNNNAGG 1 cut(s) 1779
EcoO109I RGGNCCY 4 cut(s) 61, 815, 1352, 1808
EcoRI GAATTC 2 cut(s) 1662, 1795
EcoRII CCWGG 7 cut(s) 223, 1355, 1507, 1764, 1780, 1804, 2053
EcoT14I CCWWGG 2 cut(s) 876, 1701
EcoT22I ATGCAT 4 cut(s) 1192, 1600, 1822, 1867
EcoT38I GRGCYC 1 cut(s) 840
EgeI GGCGCC 1 cut(s) 748
EheI GGCGCC 1 cut(s) 748
ErhI CCWWGG 2 cut(s) 876, 1701
Esp3I CGTCTC 1 cut(s) 783
FaeI CATG 6 cut(s) 1151, 1705, 1816, 1850, 1931, 1976
FaqI GGGAC 5 cut(s) 196, 801, 1032, 1338, 1782
FatI CATG 6 cut(s) 1147, 1701, 1812, 1846, 1927, 1972
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 540, 1425, 1515
FokI GGATG 5 cut(s) 617, 629, 1729, 1840, 1885
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 3 cut(s) 540, 1425, 1515
FspBI CTAG 2 cut(s) 567, 2172
GlaI GCGC 1 cut(s) 748
GluI GCNGC 3 cut(s) 540, 1425, 1515
GsaI CCCAGC 1 cut(s) 1384
GsuI CTGGAG 1 cut(s) 846
HaeII RGCGCY 1 cut(s) 750
HaeIII GGCC 5 cut(s) 173, 179, 267, 1446, 1523
HapII CCGG 5 cut(s) 180, 1098, 1308, 1655, 2063
HgaI GACGC 2 cut(s) 80, 2090
HhaI GCGC 1 cut(s) 749
Hin1I GRCGYC 2 cut(s) 72, 747
Hin1II CATG 6 cut(s) 1151, 1705, 1816, 1850, 1931, 1976
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HincII GTYRAC 8 cut(s) 1727, 1787, 1835, 1844, 1880, 1916, 1925, 2015
HindII GTYRAC 8 cut(s) 1727, 1787, 1835, 1844, 1880, 1916, 1925, 2015
HindIII AAGCTT 3 cut(s) 36, 50, 2029
HinfI GANTC 6 cut(s) 110, 128, 215, 509, 1831, 1887
HpaII CCGG 5 cut(s) 180, 1098, 1308, 1655, 2063
Hpy188III TCNNGA 3 cut(s) 1133, 1695, 1996
Hpy99I CGWCG 3 cut(s) 190, 1440, 2142
HpyCH4III ACNGT 3 cut(s) 193, 1632, 1791
HpyCH4IV ACGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 5 cut(s) 755, 1196, 1430, 1520, 1570
HpyF3I CTNAG 4 cut(s) 219, 249, 2027, 2032
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 2 cut(s) 72, 747
Hsp92II CATG 6 cut(s) 1151, 1705, 1816, 1850, 1931, 1976
HspAI GCGC 1 cut(s) 747
KasI GGCGCC 1 cut(s) 746
KflI GGGWCCC 1 cut(s) 1352
KpnI GGTACC 1 cut(s) 933
KroI GCCGGC 1 cut(s) 1307
KroNI GCCGGC 1 cut(s) 1309
Kzo9I GATC 5 cut(s) 31, 79, 1144, 1165, 1490
LmnI GCTCC 1 cut(s) 2089
Lsp1109I GCAGC 3 cut(s) 551, 1411, 1501
LweI GCATC 4 cut(s) 551, 1177, 1199, 1420
MabI ACCWGGT 1 cut(s) 1780
MaeI CTAG 2 cut(s) 567, 2172
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 569, 871
MalI GATC 5 cut(s) 33, 81, 1146, 1167, 1492
MboI GATC 5 cut(s) 31, 79, 1144, 1165, 1490
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 2 cut(s) 840, 1155
MluCI AATT 7 cut(s) 210, 343, 1032, 1229, 1662, 1795, 2093
Mly113I GGCGCC 1 cut(s) 747
MlyI GAGTC 4 cut(s) 122, 209, 518, 1840
MmeI TCCRAC 4 cut(s) 99, 370, 492, 1090
Mph1103I ATGCAT 4 cut(s) 1192, 1600, 1822, 1867
MroNI GCCGGC 1 cut(s) 1307
MroXI GAANNNNTTC 1 cut(s) 2167
MseI TTAA 2 cut(s) 276, 867
MslI CAYNNNNRTG 1 cut(s) 1529
MspA1I CMGCKG 1 cut(s) 1424
MspI CCGG 5 cut(s) 180, 1098, 1308, 1655, 2063
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 3 cut(s) 1309, 1566, 1822
MvaI CCWGG 7 cut(s) 225, 1357, 1509, 1766, 1782, 1806, 2055
MwoI GCNNNNNNNGC 5 cut(s) 755, 1196, 1430, 1520, 1570
NaeI GCCGGC 1 cut(s) 1309
NarI GGCGCC 1 cut(s) 747
NciI CCSGG 3 cut(s) 181, 1656, 2063
NcoI CCATGG 1 cut(s) 1701
NdeII GATC 5 cut(s) 31, 79, 1144, 1165, 1490
NgoMIV GCCGGC 1 cut(s) 1307
NlaIII CATG 6 cut(s) 1151, 1705, 1816, 1850, 1931, 1976
NmeAIII GCCGAG 2 cut(s) 199, 775
NmuCI GTSAC 2 cut(s) 569, 871
NsiI ATGCAT 4 cut(s) 1192, 1600, 1822, 1867
PaeR7I CTCGAG 1 cut(s) 839
PcsI WCGNNNNNNNCGW 1 cut(s) 2146
PctI GAATGC 3 cut(s) 1309, 1566, 1822
PdiI GCCGGC 1 cut(s) 1309
PdmI GAANNNNTTC 1 cut(s) 2167
PfeI GAWTC 2 cut(s) 110, 1887
PflMI CCANNNNNTGG 2 cut(s) 1751, 2054
PfoI TCCNGGA 1 cut(s) 1804
PkrI GCNGC 3 cut(s) 541, 1426, 1516
PleI GAGTC 4 cut(s) 122, 209, 517, 1839
PluTI GGCGCC 1 cut(s) 750
PpsI GAGTC 4 cut(s) 122, 209, 517, 1839
PpuMI RGGWCCY 4 cut(s) 61, 815, 1352, 1808
Psp124BI GAGCTC 1 cut(s) 840
Psp5II RGGWCCY 4 cut(s) 61, 815, 1352, 1808
Psp6I CCWGG 7 cut(s) 223, 1355, 1507, 1764, 1780, 1804, 2053
PspFI CCCAGC 1 cut(s) 1380
PspGI CCWGG 7 cut(s) 223, 1355, 1507, 1764, 1780, 1804, 2053
PspPI GGNCC 8 cut(s) 61, 282, 815, 1040, 1352, 1445, 1697, 1808
PspPPI RGGWCCY 4 cut(s) 61, 815, 1352, 1808
PspXI VCTCGAGB 1 cut(s) 839
PstI CTGCAG 1 cut(s) 1462
PstNI CAGNNNCTG 1 cut(s) 1514
PsuI RGATCY 1 cut(s) 1165
PvuII CAGCTG 1 cut(s) 1424
RsaI GTAC 3 cut(s) 931, 1634, 2107
RsaNI GTAC 3 cut(s) 930, 1633, 2106
RseI CAYNNNNRTG 1 cut(s) 1529
SacI GAGCTC 1 cut(s) 840
SaqAI TTAA 2 cut(s) 276, 867
SatI GCNGC 3 cut(s) 540, 1425, 1515
Sau3AI GATC 5 cut(s) 31, 79, 1144, 1165, 1490
Sau96I GGNCC 8 cut(s) 61, 282, 815, 1040, 1352, 1445, 1697, 1808
SchI GAGTC 4 cut(s) 122, 209, 518, 1840
SduI GDGCHC 2 cut(s) 840, 1155
SexAI ACCWGGT 1 cut(s) 1780
SfaNI GCATC 4 cut(s) 551, 1177, 1199, 1420
SfcI CTRYAG 1 cut(s) 1458
SfoI GGCGCC 1 cut(s) 748
Sfr274I CTCGAG 1 cut(s) 839
SinI GGWCC 7 cut(s) 61, 282, 815, 1040, 1352, 1697, 1808
SlaI CTCGAG 1 cut(s) 839
SmiMI CAYNNNNRTG 1 cut(s) 1529
SmlI CTYRAG 2 cut(s) 47, 839
SmoI CTYRAG 2 cut(s) 47, 839
Sse9I AATT 7 cut(s) 210, 343, 1032, 1229, 1662, 1795, 2093
SsiI CCGC 3 cut(s) 638, 644, 1659
SspDI GGCGCC 1 cut(s) 746
SspMI CTAG 2 cut(s) 567, 2172
SstI GAGCTC 1 cut(s) 840
StyI CCWWGG 2 cut(s) 876, 1701
TaaI ACNGT 3 cut(s) 193, 1632, 1791
TaiI ACGT 1 cut(s) 324
TaqI TCGA 9 cut(s) 30, 93, 459, 554, 780, 840, 1498, 2101, 2140
TasI AATT 7 cut(s) 210, 343, 1032, 1229, 1662, 1795, 2093
TatI WGTACW 1 cut(s) 2105
TfiI GAWTC 2 cut(s) 110, 1887
Tru1I TTAA 2 cut(s) 276, 867
Tru9I TTAA 2 cut(s) 276, 867
TscAI CASTG 1 cut(s) 1531
TseFI GTSAC 2 cut(s) 569, 871
TseI GCWGC 3 cut(s) 539, 1424, 1514
Tsp45I GTSAC 2 cut(s) 569, 871
TspDTI ATGAA 9 cut(s) 414, 522, 1044, 1221, 1236, 1257, 1307, 1547, 1829
TspRI CASTG 1 cut(s) 1531
Van91I CCANNNNNTGG 2 cut(s) 1751, 2054
VpaK11BI GGWCC 7 cut(s) 61, 282, 815, 1040, 1352, 1697, 1808
XagI CCTNNNNNAGG 1 cut(s) 1779
XapI RAATTY 5 cut(s) 343, 1032, 1229, 1662, 1795
XcmI CCANNNNNNNNNTGG 3 cut(s) 275, 1748, 1865
XhoI CTCGAG 1 cut(s) 839
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 2167
XspI CTAG 2 cut(s) 567, 2172
Zsp2I ATGCAT 4 cut(s) 1192, 1600, 1822, 1867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.