Rmu_sc0004086.1_g000003

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004086.1
OG0011216
Physical Location & Seq
Forward (+)
18800 .. 20943
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
atggatagggagagttcaccatcacctctaaatcaagcttgtgcttcttgcaagcaccagagaaagaaatgtgactccaactgtgaattggctccatactttccggcgaacaagtaccatgagtttcagaacgctcacaaactttttggcgtgagcaacatactgaagatcatagcctcgattgaaccacataaaagaaaagctgctgctgaatccatactctttgaagggaacgcttggaagagtgatcctgtgcatggttgcctcggtgtgatcaaagatctgacagcccagatgtcgtttcatgaaaaacaactcagtgttgtgaatcaacacctagcatttcataaggagcagcaaaagaaagagcaagaacaagatcaatctgattttctcaatgatgagcttcctgatctacccgatgaactaatggaagacatgaaaatttttgaacatggacacaattactggtcaaatttggtcggagcagatgaggagaagccctttgacatggaacacacagaagcatttgatgagcaagtaaatccccttacatatttcaatggacaagctggagaatgcagggcagaacgtgatgtggataattattcaaagcaaaagaaaacaaactgggctttgccaccccccaaaaaccaccacaggcccgatccaaaagaaaatgaaggaaatggaaggcccactgttacagacccagcccaaaaccctagtttgaaactagggtttcccttcaagaaacccggagacagatcggccgactccgacacctccaccaaagcttggccagtatcaatcgccattaccaacccagttcaccaagttgtcgtcatcctcccctctccccgagatcggcttgtagtaaatcgtcggaagagcagtgaccagtcactaatccgatggcaggccattgtcccccactcccccaccatcaccttgctctcaatggaaagaagctctgcccccaacctggattcactcacacgcgatcaacaacaaaagtcagaagccgccttccttgggacaacaccaatctctgacgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

353

Amino Acids

39.83

Weight (kDa)

6.02

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 13 - 110 2.4e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 798
AccII CGCG 1 cut(s) 1002
AciI CCGC 1 cut(s) 1026
AclWI GGATC 2 cut(s) 242, 662
AcoI YGGCCR 2 cut(s) 771, 800
AcsI RAATTY 2 cut(s) 444, 475
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 6 cut(s) 257, 798, 867, 919, 985, 1035
AgsI TTSAA 7 cut(s) 185, 227, 452, 562, 612, 733, 751
AjnI CCWGG 1 cut(s) 984
AluBI AGCT 6 cut(s) 38, 203, 406, 572, 797, 972
AluI AGCT 6 cut(s) 38, 203, 406, 572, 797, 972
Alw26I GTCTC 1 cut(s) 756
AlwI GGATC 2 cut(s) 242, 662
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 5 cut(s) 662, 695, 771, 800, 921
ApeKI GCWGC 3 cut(s) 203, 206, 355
ApoI RAATTY 2 cut(s) 444, 475
AspS9I GGNCC 2 cut(s) 663, 696
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 4 cut(s) 9, 15, 824, 940
AvaI CYCGRG 1 cut(s) 861
BalI TGGCCA 1 cut(s) 802
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 190, 193, 367
BccI CCATC 3 cut(s) 28, 909, 953
BciT130I CCWGG 1 cut(s) 986
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 1 cut(s) 756
BfaI CTAG 3 cut(s) 338, 726, 737
BglII AGATCT 1 cut(s) 280
BisI GCNGC 4 cut(s) 204, 207, 356, 1026
BlsI GCNGC 4 cut(s) 205, 208, 357, 1027
Bme1390I CCNGG 2 cut(s) 759, 986
BmeT110I CYCGRG 1 cut(s) 861
BmgT120I GGNCC 2 cut(s) 663, 696
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 759, 986
BmrI ACTGGG 2 cut(s) 640, 821
BmuI ACTGGG 2 cut(s) 640, 821
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 594
BpuMI CCSGG 1 cut(s) 759
BsaJI CCNNGG 2 cut(s) 265, 1033
Bsc4I CCNNNNNNNGG 6 cut(s) 257, 798, 867, 919, 985, 1035
Bse1I ACTGG 5 cut(s) 473, 635, 803, 827, 901
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 2 cut(s) 265, 1033
BseGI GGATG 1 cut(s) 846
BseLI CCNNNNNNNGG 6 cut(s) 257, 798, 867, 919, 985, 1035
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 5 cut(s) 473, 635, 803, 827, 901
BseRI GAGGAG 1 cut(s) 509
BseX3I CGGCCG 1 cut(s) 771
BseXI GCAGC 3 cut(s) 190, 193, 367
BseYI CCCAGC 1 cut(s) 712
Bsh1236I CGCG 1 cut(s) 1002
Bsh1285I CGRYCG 1 cut(s) 774
BshFI GGCC 5 cut(s) 664, 697, 773, 802, 923
BsiEI CGRYCG 1 cut(s) 774
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 2 cut(s) 104, 759
BslFI GGGAC 2 cut(s) 914, 1051
BslI CCNNNNNNNGG 6 cut(s) 257, 798, 867, 919, 985, 1035
BsmAI GTCTC 1 cut(s) 756
BsmFI GGGAC 2 cut(s) 914, 1051
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 5 cut(s) 664, 697, 773, 802, 923
BsoBI CYCGRG 1 cut(s) 861
BspACI CCGC 1 cut(s) 1026
BspANI GGCC 5 cut(s) 664, 697, 773, 802, 923
BspCNI CTCAG 1 cut(s) 330
BspFNI CGCG 1 cut(s) 1002
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 242, 662
BspQI GCTCTTC 1 cut(s) 884
BsrI ACTGG 5 cut(s) 473, 635, 803, 827, 901
BssECI CCNNGG 2 cut(s) 265, 1033
BssT1I CCWWGG 1 cut(s) 1033
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 2 cut(s) 83, 703
Bst6I CTCTTC 2 cut(s) 236, 884
BstC8I GCNNGC 2 cut(s) 53, 921
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 846
BstFNI CGCG 1 cut(s) 1002
BstMAI GTCTC 1 cut(s) 756
BstMCI CGRYCG 1 cut(s) 774
BstNI CCWGG 1 cut(s) 986
BstSCI CCNGG 2 cut(s) 757, 984
BstUI CGCG 1 cut(s) 1002
BstV1I GCAGC 3 cut(s) 190, 193, 367
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BstZI CGGCCG 1 cut(s) 771
BsuRI GGCC 5 cut(s) 664, 697, 773, 802, 923
BtsCI GGATG 1 cut(s) 846
BtsI GCAGTG 1 cut(s) 901
BtsIMutI CAGTG 3 cut(s) 325, 699, 901
Cac8I GCNNGC 2 cut(s) 53, 921
CciI TCATGA 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 663, 696
Csp6I GTAC 1 cut(s) 115
CviAII CATG 6 cut(s) 119, 257, 305, 439, 455, 511
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 317
EaeI YGGCCR 2 cut(s) 771, 800
EagI CGGCCG 1 cut(s) 771
Eam1104I CTCTTC 2 cut(s) 236, 884
EarI CTCTTC 2 cut(s) 236, 884
EclXI CGGCCG 1 cut(s) 771
Eco130I CCWWGG 1 cut(s) 1033
Eco52I CGGCCG 1 cut(s) 771
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 861
EcoRII CCWGG 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 1033
ErhI CCWWGG 1 cut(s) 1033
FaeI CATG 6 cut(s) 122, 260, 308, 442, 458, 514
FaqI GGGAC 2 cut(s) 914, 1051
FatI CATG 6 cut(s) 118, 256, 304, 438, 454, 510
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 4 cut(s) 204, 207, 356, 1026
FokI GGATG 1 cut(s) 833
Fsp4HI GCNGC 4 cut(s) 204, 207, 356, 1026
FspBI CTAG 3 cut(s) 338, 726, 737
GluI GCNGC 4 cut(s) 204, 207, 356, 1026
GsaI CCCAGC 1 cut(s) 716
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 5 cut(s) 664, 697, 773, 802, 923
HapII CCGG 2 cut(s) 104, 759
Hin1II CATG 6 cut(s) 122, 260, 308, 442, 458, 514
HindIII AAGCTT 2 cut(s) 36, 795
HinfI GANTC 5 cut(s) 74, 212, 328, 776, 989
HpaII CCGG 2 cut(s) 104, 759
HphI GGTGA 4 cut(s) 9, 15, 824, 940
Hpy166II GTNNAC 2 cut(s) 17, 832
Hpy188I TCNGA 9 cut(s) 129, 285, 388, 485, 781, 888, 914, 1021, 1054
Hpy188III TCNNGA 3 cut(s) 305, 410, 751
Hpy8I GTNNAC 2 cut(s) 17, 832
Hpy99I CGWCG 1 cut(s) 888
HpyAV CCTTC 5 cut(s) 221, 677, 687, 757, 1039
HpyCH4III ACNGT 2 cut(s) 83, 703
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 3 cut(s) 51, 256, 582
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 6 cut(s) 122, 260, 308, 442, 458, 514
Ksp22I TGATCA 1 cut(s) 273
LguI GCTCTTC 1 cut(s) 884
LmnI GCTCC 3 cut(s) 97, 352, 485
Lsp1109I GCAGC 3 cut(s) 190, 193, 367
MaeI CTAG 3 cut(s) 338, 726, 737
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 4 cut(s) 71, 703, 896, 903
MboII GAAGA 4 cut(s) 178, 253, 446, 901
MflI RGATCY 1 cut(s) 280
MlsI TGGCCA 1 cut(s) 802
MluCI AATT 5 cut(s) 86, 444, 463, 475, 604
MluNI TGGCCA 1 cut(s) 802
MlyI GAGTC 2 cut(s) 68, 770
MmeI TCCRAC 4 cut(s) 102, 463, 804, 866
MnlI CCTC 7 cut(s) 36, 187, 275, 487, 796, 860, 865
Mox20I TGGCCA 1 cut(s) 802
MscI TGGCCA 1 cut(s) 802
Msp20I TGGCCA 1 cut(s) 802
MspI CCGG 2 cut(s) 104, 759
MspR9I CCNGG 2 cut(s) 759, 986
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 1 cut(s) 986
MvnI CGCG 1 cut(s) 1002
NciI CCSGG 1 cut(s) 759
NlaIII CATG 6 cut(s) 122, 260, 308, 442, 458, 514
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 3 cut(s) 71, 896, 903
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 884
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 3 cut(s) 212, 328, 989
PflMI CCANNNNNTGG 1 cut(s) 798
PkrI GCNGC 4 cut(s) 205, 208, 357, 1027
PleI GAGTC 2 cut(s) 68, 770
PpsI GAGTC 2 cut(s) 68, 770
Psp6I CCWGG 1 cut(s) 984
PspFI CCCAGC 1 cut(s) 712
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 663, 696
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 884
SatI GCNGC 4 cut(s) 204, 207, 356, 1026
Sau96I GGNCC 2 cut(s) 663, 696
SchI GAGTC 2 cut(s) 68, 770
ScrFI CCNGG 2 cut(s) 759, 986
Sse9I AATT 5 cut(s) 86, 444, 463, 475, 604
SsiI CCGC 1 cut(s) 1026
SspMI CTAG 3 cut(s) 338, 726, 737
StyD4I CCNGG 2 cut(s) 757, 984
StyI CCWWGG 1 cut(s) 1033
TaaI ACNGT 2 cut(s) 83, 703
TaiI ACGT 1 cut(s) 595
TaqI TCGA 1 cut(s) 179
TasI AATT 5 cut(s) 86, 444, 463, 475, 604
TauI GCSGC 1 cut(s) 1028
TfiI GAWTC 3 cut(s) 212, 328, 989
TscAI CASTG 3 cut(s) 325, 706, 901
TseFI GTSAC 3 cut(s) 71, 896, 903
TseI GCWGC 3 cut(s) 203, 206, 355
Tsp45I GTSAC 3 cut(s) 71, 896, 903
TspDTI ATGAA 6 cut(s) 293, 321, 335, 438, 455, 696
TspRI CASTG 3 cut(s) 325, 706, 901
Van91I CCANNNNNTGG 1 cut(s) 798
XapI RAATTY 2 cut(s) 444, 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 3 cut(s) 338, 726, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.