Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004521.1

Orthogroup ID

OG0008065

Physical Location & Seq

Genomic Coordinates Reverse (-)

88849 .. 92108

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

atggaacacttgcagattggacgtcagacgcaagccatcactgcaattggtctggcggcctgtgacccctcgacaaatcaagtcatttcaatttctctggcagaaaagcagctcacaggcgtgatctcacccttcctcggaaacatttcgggcctccaggttcttgatctaacttcaaactcattcactggacatattccagctgagctgggactttgctcccaactttctctacttgctctgtatcaaaattctctttcgggttcaattccaccagaactaggaaaccttagtaatctgcagttattagatttgggtgataaccttttgagtggaagaatgccggagagcatttgcaactgtagcaacttgtctttgtttggtgcggaatttaataacctcactggcaaactcccatcaaacataggaaatcttgttaatcttgagcttcttatagcaagtggcaacaactttgtaggctcattacctgcttccatgggtaagttggcagctttcaaagaggttgatttaagtaaaaaccagttgtccggtgcaatacctagggagctagggaatctgtcaaatttagaacaactggtagtgtttgataattcctttgttggggaaatcccttctgaactaagtcggtgtaagaagcttgttaaccttgaactttacgagaatcatttcaccggaagcattccctctgagcttggaagtttggttcatttagaaacattgagattgtacaagaataggctaaactctacaattccactctccatttttcagctgaaatcattaacccatttaggactttcagaaaatgagttaactgggacaataccatccgagcttggatctttaagatcattgcaagtattgaccctgcactccaataagtttaccggagagatcccctcatccttgacaagcttgacaaatctaacatatctgtcaatgagcttaaattctctaacaggggaacttccatcaaacatagggttgctttataatcttaaaaacctctccatgaatggcaaccttcttgagggatccataccatctagtatcaccaactgtaccaatcttcaagttataagcttggcttataatagaataactggaaaaatacctcagggtctggggcagttgccgaagcttaatttcctttctgttggatccaataaattgttcggagaaatcccagatgacctcttcaattgcactagtcttctcactctagatttgggcctgaacaactttagtggttatctgaaacccggatttggaaaactttccaatctcagggttttgagagccacctccaattcatttgtcggacaaattccaccagagattggccaactaaaccaacttatcatcctcacacttgctgagaatagattctcaggtccagttccaccacagctgtctaatctctctcacctacaagggctatccctacacgataatgctttagaaggagccatccctgagaaactttttgagctaaaagagttaactgttctagagttgctgcaaaacaaactgaccggtccaattccagatactggcacaaaacttgagttgctttcatatttaaacctccaaggtaatatgctcaatggttccattccgaaaagcatggctcaccttaatcggctaacgactctggatctctctcacaatcatctctcaggacccattccagggtctgtgatctcagggatgaaaagcatgcagatatatttgaatttctcatacaatttcttggatggcagcattccagacgagcttggcatgttggaaatggtgcaggccattgacatttccaacaataatctttcagggatgattcctgtagcagtagaaggctgcaggaatttgtactctcttgatctgtcaggtaacaaactttcagggccaattcaagctgaagtttttgctaagatggacaccttcacaagcttgaacctttcaaggaatcacttagatggtgaactcccagaaaagttgacaaatctgaagcatcttagctcccttgatctttcccagaattttctgacgggagttatccgtgagagctttaccaattttaccagcttgaaacacttgaacctctctttcaatcaacttgaaggccctgttccagacaccggactattcagaagtataaatgcatccagcttggtaggaaacccggatctctgtggaaacaaactgctcaagacatgcaagaaaagttcacaccggatatccaagacaaccatgtatgttctcgtggcgcttggaataatttctctactgcttattttagtgatcattttcctaatccgcagccggttcaccaaaatgtgtaagccagaaaagattgaaaatccagaaccagagtgtgctgcagctttggcactcaagaggtttgatcaaaaggatttagaaaatgccactagtttctttagcaaagagaacattttaggcacaagcaggttgagtactgtgtacaagggtcaactggaagatgagcagatagtagccataaagagattgaatctccaggaattctcagttgagtcagataaatgcttcaatagagaaatcaagacactgagtcaactaaggcacaggaatttggtgaaggtacttggctatgcatgggagagtgggaaattaaaggccttggttctggaatacatggagaatggaaacctggagaacattatacatgaagatgggatgaatcagtggagattgacattctctcagagaatcaatattttaatctctatagcaaagtttgcatacatgaggaaaatcacaaccaaggtagacgtcttcagctttggtgtaatagtgatggagttactgacaagacaaaggccaacaggactcatggaaggaaatgggctgccaatgagcttgcaccaagtagtggagaaagcccttgcagatggatcagattcgcttcttgaagttctggacccgatgctaactttaaatatctccgaggaacaggtggcaaatgcagaagagctgctcaagctagccttgttttgcaccaaccaaaatcccgagcagcgacctatcatgaatgaggtgttgtctgctcttttgaagctgaaaaaggcaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1044

Amino Acids

114.28

Weight (kDa)

5.99

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	136 - 226	9.7e-07	Leucine-rich repeat region
LRR_14	PF23598	221 - 325	6.2e-11	Leucine-rich repeat region
LRR_8	PF13855	243 - 302	5.6e-07	Leucine rich repeat
LRR_14	PF23598	332 - 442	1.2e-07	Leucine-rich repeat region
LRR_8	PF13855	339 - 398	2.8e-07	Leucine rich repeat
LRR_14	PF23598	426 - 514	4.3e-07	Leucine-rich repeat region
LRR_8	PF13855	507 - 566	2.4e-07	Leucine rich repeat
LRR_8	PF13855	607 - 665	8e-08	Leucine rich repeat
LRR_8	PF13855	656 - 713	3.2e-08	Leucine rich repeat
Pkinase	PF00069	821 - 913	2.9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	823 - 932	3.1e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46330 AT5G46330
fragaria_vesca	FvH4_3g06100
malus_domestica	MD05G1289000.v1.1
prunus_persica	Prupe.4G076500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013311
rosa_laevigata	RLG00000032007 RLG00000032011
rosa_multiflora	Rmu_co8051088.1_g000001 Rmu_sc0003458.1_g000007 Rmu_sc0003458.1_g000011 Rmu_sc0004521.1_g000021 Rmu_sc0007948.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063230
rosa_rugosa	Rorug05G0008800
rosa_samantha	Rh5AG103400 Rh5AG103500 Rh5AG104200 Rh5BG100200 Rh5CG111400 Rh5CG111800 Rh5DG099000
rosa_wichuraiana	Rw5G009030 Rw5G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1014, 1100, 1113
AatII	GACGTC	2 cut(s)	25, 2835
Acc36I	ACCTGC	2 cut(s)	496, 2478
AccB7I	CCANNNNNTGG	3 cut(s)	1361, 1574, 2932
AccI	GTMKAC	1 cut(s)	2829
AciI	CCGC	3 cut(s)	56, 386, 2338
AclWI	GGATC	9 cut(s)	868, 910, 1050, 1063, 1176, 1189, 1686, 2214, 2962
AcoI	YGGCCR	1 cut(s)	1363
AcuI	CTGAAG	3 cut(s)	1959, 2048, 2821
AcyI	GRCGYC	2 cut(s)	22, 2832
AfaI	GTAC	6 cut(s)	749, 1084, 1892, 2497, 2504, 2643
AgeI	ACCGGT	1 cut(s)	1556
AhdI	GACNNNNNGTC	1 cut(s)	2610
AhlI	ACTAGT	2 cut(s)	1229, 2450
AjnI	CCWGG	4 cut(s)	156, 1711, 2556, 2709
AjuI	GAANNNNNNNTTGG	2 cut(s)	1178, 1210
AleI	CACNNNNGTG	1 cut(s)	119
AloI	GAACNNNNNNTCC	2 cut(s)	708, 740
AlwI	GGATC	9 cut(s)	868, 910, 1050, 1063, 1176, 1189, 1686, 2214, 2962
AlwNI	CAGNNNCTG	3 cut(s)	1144, 1574, 1718
Ama87I	CYCGRG	1 cut(s)	3071
AoxI	GGCC	9 cut(s)	57, 151, 1252, 1363, 1821, 1925, 2143, 2676, 2879
AsiGI	ACCGGT	1 cut(s)	1556
Asp700I	GAANNNNTTC	5 cut(s)	145, 686, 1297, 1406, 2299
AspA2I	CCTAGG	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	2290
AspS9I	GGNCC	8 cut(s)	151, 1252, 1415, 1559, 1703, 1925, 2144, 2980
AsuC2I	CCSGG	2 cut(s)	1284, 2204
AsuHPI	GGTGA	9 cut(s)	120, 329, 682, 1066, 1439, 1646, 2012, 2341, 2647
AsuNHI	GCTAGC	1 cut(s)	3043
AvaI	CYCGRG	1 cut(s)	3071
AvaII	GGWCC	4 cut(s)	1415, 1559, 1703, 2980
AvrII	CCTAGG	1 cut(s)	560
AxyI	CCTNAGG	1 cut(s)	1137
BalI	TGGCCA	1 cut(s)	1365
BamHI	GGATCC	2 cut(s)	1055, 1181
BauI	CACGAG	1 cut(s)	2282
BbsI	GAAGAC	2 cut(s)	1226, 2827
BciT130I	CCWGG	4 cut(s)	158, 1713, 2558, 2711
BclI	TGATCA	2 cut(s)	2322, 2425
BcnI	CCSGG	2 cut(s)	1284, 2204
BcuI	ACTAGT	2 cut(s)	1229, 2450
BfaI	CTAG	9 cut(s)	281, 561, 569, 1068, 1230, 1244, 1532, 2451, 3044
BfmI	CTRYAG	6 cut(s)	299, 361, 1863, 1879, 2400, 2787
BfoI	RGCGCY	1 cut(s)	2291
BfuAI	ACCTGC	2 cut(s)	496, 2478
BlnI	CCTAGG	1 cut(s)	560
BlpI	GCTNAGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	2497
Bme1390I	CCNGG	6 cut(s)	158, 1284, 1713, 2204, 2558, 2711
Bme18I	GGWCC	4 cut(s)	1415, 1559, 1703, 2980
BmeRI	GACNNNNNGTC	1 cut(s)	2610
BmeT110I	CYCGRG	1 cut(s)	3071
BmgT120I	GGNCC	8 cut(s)	151, 1252, 1415, 1559, 1703, 1925, 2144, 2980
BmiI	GGNNCC	6 cut(s)	1057, 1183, 1489, 1633, 1705, 2982
BmrFI	CCNGG	6 cut(s)	158, 1284, 1713, 2204, 2558, 2711
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	3 cut(s)	2041, 2192, 2976
BmtI	GCTAGC	1 cut(s)	3047
BmuI	ACTGGG	1 cut(s)	846
BpiI	GAAGAC	2 cut(s)	1226, 2827
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
BpmI	CTGGAG	3 cut(s)	140, 2540, 2732
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	6 cut(s)	464, 1070, 1607, 2213, 2399, 3023
BpuMI	CCSGG	2 cut(s)	1284, 2204
BsaHI	GRCGYC	2 cut(s)	22, 2832
BsaJI	CCNNGG	8 cut(s)	136, 495, 560, 1612, 1712, 2679, 2823, 3006
BsaWI	WCCGGW	6 cut(s)	548, 692, 908, 1556, 2159, 2253
Bse118I	RCCGGY	2 cut(s)	1556, 2343
Bse1I	ACTGG	9 cut(s)	193, 409, 541, 600, 841, 1129, 1418, 1579, 2520
Bse21I	CCTNAGG	1 cut(s)	1137
Bse3DI	GCAATG	1 cut(s)	872
BseBI	CCWGG	4 cut(s)	158, 1713, 2558, 2711
BseDI	CCNNGG	8 cut(s)	136, 495, 560, 1612, 1712, 2679, 2823, 3006
BseGI	GGATG	9 cut(s)	848, 923, 1383, 1491, 1737, 1783, 1860, 2183, 2742
BseMI	GCAATG	1 cut(s)	872
BseNI	ACTGG	9 cut(s)	193, 409, 541, 600, 841, 1129, 1418, 1579, 2520
BseYI	CCCAGC	1 cut(s)	208
BsgI	GTGCAG	2 cut(s)	875, 1838
BshFI	GGCC	9 cut(s)	59, 153, 1254, 1365, 1823, 1927, 2145, 2678, 2881
BshTI	ACCGGT	1 cut(s)	1556
BsiHKCI	CYCGRG	1 cut(s)	3071
BslFI	GGGAC	2 cut(s)	225, 853
BsmFI	GGGAC	2 cut(s)	225, 853
BsmI	GAATGC	3 cut(s)	345, 699, 1785
BsnI	GGCC	9 cut(s)	59, 153, 1254, 1365, 1823, 1927, 2145, 2678, 2881
BsoBI	CYCGRG	1 cut(s)	3071
Bsp1407I	TGTACA	2 cut(s)	747, 2502
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	3 cut(s)	56, 386, 2338
BspANI	GGCC	9 cut(s)	59, 153, 1254, 1365, 1823, 1927, 2145, 2678, 2881
BspHI	TCATGA	1 cut(s)	3087
BspLI	GGNNCC	6 cut(s)	1057, 1183, 1489, 1633, 1705, 2982
BspMAI	CTGCAG	3 cut(s)	303, 1883, 2404
BspMI	ACCTGC	2 cut(s)	496, 2478
BspOI	GCTAGC	1 cut(s)	3047
BspPI	GGATC	9 cut(s)	868, 910, 1050, 1063, 1176, 1189, 1686, 2214, 2962
BspQI	GCTCTTC	1 cut(s)	3024
BsrDI	GCAATG	1 cut(s)	872
BsrFI	RCCGGY	2 cut(s)	1556, 2343
BsrGI	TGTACA	2 cut(s)	747, 2502
BsrI	ACTGG	9 cut(s)	193, 409, 541, 600, 841, 1129, 1418, 1579, 2520
BssAI	RCCGGY	2 cut(s)	1556, 2343
BssECI	CCNNGG	8 cut(s)	136, 495, 560, 1612, 1712, 2679, 2823, 3006
BssNI	GRCGYC	2 cut(s)	22, 2832
BssSI	CACGAG	1 cut(s)	2282
BssT1I	CCWWGG	5 cut(s)	495, 560, 1612, 2679, 2823
Bst2BI	CACGAG	1 cut(s)	2282
Bst2UI	CCWGG	4 cut(s)	158, 1713, 2558, 2711
Bst4CI	ACNGT	4 cut(s)	362, 1082, 1528, 2500
Bst6I	CTCTTC	2 cut(s)	1223, 3024
BstACI	GRCGYC	2 cut(s)	22, 2832
BstAPI	GCANNNNNTGC	1 cut(s)	2798
BstAUI	TGTACA	2 cut(s)	747, 2502
BstC8I	GCNNGC	5 cut(s)	33, 1742, 1821, 2921, 3045
BstDSI	CCRYGG	1 cut(s)	495
BstENI	CCTNNNNNAGG	1 cut(s)	1049
BstF5I	GGATG	9 cut(s)	848, 923, 1383, 1491, 1737, 1783, 1860, 2183, 2742
BstH2I	RGCGCY	1 cut(s)	2291
BstHHI	GCGC	1 cut(s)	2290
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 363, 2408, 2798, 3040
BstNI	CCWGG	4 cut(s)	158, 1713, 2558, 2711
BstNSI	RCATGY	3 cut(s)	1744, 1807, 2238
BstSCI	CCNGG	6 cut(s)	156, 1282, 1711, 2202, 2556, 2709
BstSFI	CTRYAG	6 cut(s)	299, 361, 1863, 1879, 2400, 2787
BstV2I	GAAGAC	2 cut(s)	1226, 2827
BstX2I	RGATCY	6 cut(s)	860, 915, 1055, 1181, 1678, 2206
BstYI	RGATCY	6 cut(s)	860, 915, 1055, 1181, 1678, 2206
Bsu36I	CCTNAGG	1 cut(s)	1137
BsuRI	GGCC	9 cut(s)	59, 153, 1254, 1365, 1823, 1927, 2145, 2678, 2881
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	9 cut(s)	848, 923, 1383, 1491, 1737, 1783, 1860, 2183, 2742
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	5 cut(s)	39, 186, 402, 2606, 2750
BveI	ACCTGC	2 cut(s)	496, 2478
Cac8I	GCNNGC	5 cut(s)	33, 1742, 1821, 2921, 3045
CaiI	CAGNNNCTG	3 cut(s)	1144, 1574, 1718
CciI	TCATGA	1 cut(s)	3087
CfoI	GCGC	1 cut(s)	2290
Cfr10I	RCCGGY	2 cut(s)	1556, 2343
Cfr13I	GGNCC	8 cut(s)	151, 1252, 1415, 1559, 1703, 1925, 2144, 2980
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	6 cut(s)	748, 1083, 1891, 2496, 2503, 2642
CspAI	ACCGGT	1 cut(s)	1556
CspCI	CAANNNNNGTGG	2 cut(s)	1249, 1284
CviQI	GTAC	6 cut(s)	748, 1083, 1891, 2496, 2503, 2642
DraI	TTTAAA	2 cut(s)	1605, 2997
DriI	GACNNNNNGTC	1 cut(s)	2610
EaeI	YGGCCR	1 cut(s)	1363
Eam1104I	CTCTTC	2 cut(s)	1223, 3024
Eam1105I	GACNNNNNGTC	1 cut(s)	2610
EarI	CTCTTC	2 cut(s)	1223, 3024
Eco130I	CCWWGG	5 cut(s)	495, 560, 1612, 2679, 2823
Eco147I	AGGCCT	1 cut(s)	2678
Eco32I	GATATC	1 cut(s)	2259
Eco47I	GGWCC	4 cut(s)	1415, 1559, 1703, 2980
Eco57I	CTGAAG	3 cut(s)	1959, 2048, 2821
Eco81I	CCTNAGG	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	3071
EcoNI	CCTNNNNNAGG	1 cut(s)	1049
EcoO109I	RGGNCCY	2 cut(s)	1703, 2144
EcoRI	GAATTC	1 cut(s)	2561
EcoRII	CCWGG	4 cut(s)	156, 1711, 2556, 2709
EcoRV	GATATC	1 cut(s)	2259
EcoT14I	CCWWGG	5 cut(s)	495, 560, 1612, 2679, 2823
EcoT22I	ATGCAT	2 cut(s)	2185, 2656
ErhI	CCWWGG	5 cut(s)	495, 560, 1612, 2679, 2823
FalI	AAGNNNNNCTT	4 cut(s)	1093, 1125, 3032, 3064
FaqI	GGGAC	2 cut(s)	225, 853
FbaI	TGATCA	2 cut(s)	2322, 2425
FblI	GTMKAC	1 cut(s)	2829
FokI	GGATG	9 cut(s)	835, 910, 1370, 1478, 1744, 1790, 1867, 2170, 2749
FspBI	CTAG	9 cut(s)	281, 561, 569, 1068, 1230, 1244, 1532, 2451, 3044
GlaI	GCGC	1 cut(s)	2289
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	3 cut(s)	140, 2540, 2732
HaeII	RGCGCY	1 cut(s)	2291
HaeIII	GGCC	9 cut(s)	59, 153, 1254, 1365, 1823, 1927, 2145, 2678, 2881
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	2290
Hin1I	GRCGYC	2 cut(s)	22, 2832
Hin6I	GCGC	1 cut(s)	2288
HinP1I	GCGC	1 cut(s)	2288
HincII	GTYRAC	6 cut(s)	664, 834, 1524, 2019, 2513, 2615
HindII	GTYRAC	6 cut(s)	664, 834, 1524, 2019, 2513, 2615
HindIII	AAGCTT	5 cut(s)	656, 934, 1102, 1160, 1969
HpaI	GTTAAC	3 cut(s)	664, 834, 1524
HphI	GGTGA	9 cut(s)	120, 329, 682, 1066, 1439, 1646, 2012, 2341, 2647
HpyAV	CCTTC	9 cut(s)	142, 642, 1055, 1478, 1868, 1972, 2135, 2632, 2891
HpyCH4III	ACNGT	4 cut(s)	362, 1082, 1528, 2500
HpyCH4IV	ACGT	2 cut(s)	22, 2832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 363, 2408, 2798, 3040
HpySE526I	ACGT	2 cut(s)	22, 2832
Hsp92I	GRCGYC	2 cut(s)	22, 2832
HspAI	GCGC	1 cut(s)	2288
Ksp22I	TGATCA	2 cut(s)	2322, 2425
KspAI	GTTAAC	3 cut(s)	664, 834, 1524
LguI	GCTCTTC	1 cut(s)	3024
LmnI	GCTCC	4 cut(s)	224, 565, 1487, 2045
LweI	GCATC	3 cut(s)	2041, 2192, 2976
MaeI	CTAG	9 cut(s)	281, 561, 569, 1068, 1230, 1244, 1532, 2451, 3044
MaeII	ACGT	2 cut(s)	22, 2832
MaeIII	GTNAC	3 cut(s)	62, 1910, 2862
MboII	GAAGA	8 cut(s)	348, 1082, 1210, 1226, 2531, 2741, 2827, 3041
MfeI	CAATTG	2 cut(s)	45, 1222
MflI	RGATCY	6 cut(s)	860, 915, 1055, 1181, 1678, 2206
MlsI	TGGCCA	1 cut(s)	1365
MluNI	TGGCCA	1 cut(s)	1365
MlyI	GAGTC	4 cut(s)	1666, 2582, 2620, 2883
MmeI	TCCRAC	4 cut(s)	1159, 1321, 1788, 1860
Mox20I	TGGCCA	1 cut(s)	1365
Mph1103I	ATGCAT	2 cut(s)	2185, 2656
MroXI	GAANNNNTTC	5 cut(s)	145, 686, 1297, 1406, 2299
MscI	TGGCCA	1 cut(s)	1365
MslI	CAYNNNNRTG	5 cut(s)	119, 1473, 1995, 2354, 2730
Msp20I	TGGCCA	1 cut(s)	1365
MspA1I	CMGCKG	3 cut(s)	203, 793, 1432
MspR9I	CCNGG	6 cut(s)	158, 1284, 1713, 2204, 2558, 2711
MunI	CAATTG	2 cut(s)	45, 1222
Mva1269I	GAATGC	3 cut(s)	345, 699, 1785
MvaI	CCWGG	4 cut(s)	158, 1713, 2558, 2711
MwoI	GCNNNNNNNGC	5 cut(s)	41, 363, 2408, 2798, 3040
NciI	CCSGG	2 cut(s)	1284, 2204
NcoI	CCATGG	1 cut(s)	495
NheI	GCTAGC	1 cut(s)	3043
NlaIV	GGNNCC	6 cut(s)	1057, 1183, 1489, 1633, 1705, 2982
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	2 cut(s)	2185, 2656
NspI	RCATGY	3 cut(s)	1744, 1807, 2238
OliI	CACNNNNGTG	1 cut(s)	119
PaeI	GCATGC	1 cut(s)	1744
PagI	TCATGA	1 cut(s)	3087
PceI	AGGCCT	1 cut(s)	2678
PciSI	GCTCTTC	1 cut(s)	3024
PctI	GAATGC	3 cut(s)	345, 699, 1785
PdmI	GAANNNNTTC	5 cut(s)	145, 686, 1297, 1406, 2299
PfeI	GAWTC	9 cut(s)	574, 682, 1407, 1858, 1987, 2551, 2740, 2769, 2960
PflMI	CCANNNNNTGG	3 cut(s)	1361, 1574, 2932
PfoI	TCCNGGA	1 cut(s)	2556
PinAI	ACCGGT	1 cut(s)	1556
PleI	GAGTC	4 cut(s)	1666, 2581, 2619, 2883
PpsI	GAGTC	4 cut(s)	1666, 2581, 2619, 2883
PpuMI	RGGWCCY	1 cut(s)	1703
PsiI	TTATAA	3 cut(s)	1014, 1100, 1113
Psp5II	RGGWCCY	1 cut(s)	1703
Psp6I	CCWGG	4 cut(s)	156, 1711, 2556, 2709
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	4 cut(s)	156, 1711, 2556, 2709
PspN4I	GGNNCC	6 cut(s)	1057, 1183, 1489, 1633, 1705, 2982
PspPI	GGNCC	8 cut(s)	151, 1252, 1415, 1559, 1703, 1925, 2144, 2980
PspPPI	RGGWCCY	1 cut(s)	1703
PstI	CTGCAG	3 cut(s)	303, 1883, 2404
PstNI	CAGNNNCTG	3 cut(s)	1144, 1574, 1718
PsuI	RGATCY	6 cut(s)	860, 915, 1055, 1181, 1678, 2206
PvuII	CAGCTG	3 cut(s)	203, 793, 1432
RsaI	GTAC	6 cut(s)	749, 1084, 1892, 2497, 2504, 2643
RsaNI	GTAC	6 cut(s)	748, 1083, 1891, 2496, 2503, 2642
RseI	CAYNNNNRTG	5 cut(s)	119, 1473, 1995, 2354, 2730
SapI	GCTCTTC	1 cut(s)	3024
Sau96I	GGNCC	8 cut(s)	151, 1252, 1415, 1559, 1703, 1925, 2144, 2980
ScaI	AGTACT	1 cut(s)	2497
SchI	GAGTC	4 cut(s)	1666, 2582, 2620, 2883
ScrFI	CCNGG	6 cut(s)	158, 1284, 1713, 2204, 2558, 2711
SfaNI	GCATC	3 cut(s)	2041, 2192, 2976
SfcI	CTRYAG	6 cut(s)	299, 361, 1863, 1879, 2400, 2787
SinI	GGWCC	4 cut(s)	1415, 1559, 1703, 2980
SmiMI	CAYNNNNRTG	5 cut(s)	119, 1473, 1995, 2354, 2730
SmlI	CTYRAG	6 cut(s)	443, 1049, 1586, 2228, 2414, 3038
SmoI	CTYRAG	6 cut(s)	443, 1049, 1586, 2228, 2414, 3038
SpeI	ACTAGT	2 cut(s)	1229, 2450
SphI	GCATGC	1 cut(s)	1744
SseBI	AGGCCT	1 cut(s)	2678
SsiI	CCGC	3 cut(s)	56, 386, 2338
SspI	AATATT	1 cut(s)	2776
SspMI	CTAG	9 cut(s)	281, 561, 569, 1068, 1230, 1244, 1532, 2451, 3044
StuI	AGGCCT	1 cut(s)	2678
StyD4I	CCNGG	6 cut(s)	156, 1282, 1711, 2202, 2556, 2709
StyI	CCWWGG	5 cut(s)	495, 560, 1612, 2679, 2823
TaaI	ACNGT	4 cut(s)	362, 1082, 1528, 2500
TaiI	ACGT	2 cut(s)	25, 2835
TaqI	TCGA	1 cut(s)	71
TatI	WGTACW	4 cut(s)	747, 1890, 2495, 2502
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	9 cut(s)	574, 682, 1407, 1858, 1987, 2551, 2740, 2769, 2960
TscAI	CASTG	5 cut(s)	46, 193, 409, 2613, 2750
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	8 cut(s)	716, 1049, 1323, 1587, 1748, 2742, 2753, 3104
TspGWI	ACGGA	1 cut(s)	2069
TspRI	CASTG	5 cut(s)	46, 193, 409, 2613, 2750
Van91I	CCANNNNNTGG	3 cut(s)	1361, 1574, 2932
VpaK11BI	GGWCC	4 cut(s)	1415, 1559, 1703, 2980
XagI	CCTNNNNNAGG	1 cut(s)	1049
XbaI	TCTAGA	2 cut(s)	1243, 1531
XceI	RCATGY	3 cut(s)	1744, 1807, 2238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmaJI	CCTAGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	2829
XmnI	GAANNNNTTC	5 cut(s)	145, 686, 1297, 1406, 2299
XspI	CTAG	9 cut(s)	281, 561, 569, 1068, 1230, 1244, 1532, 2451, 3044
ZraI	GACGTC	2 cut(s)	23, 2833
ZrmI	AGTACT	1 cut(s)	2497
Zsp2I	ATGCAT	2 cut(s)	2185, 2656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.