Rmu_sc0004593.1_g000005

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004593.1
OG0007483
Physical Location & Seq
Forward (+)
33049 .. 36287
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
atggttcatcctcctgtcgaaaattttgttcacgcctcaccatatttgccaactggtttttctcaacatctgggtggctttaatcctgctagtttagctatgctttttaattgctctactcctgctagcacaaacacatataatatgcctacacactacagtgcatataatatgtctcatgttagcacaagtcaagtaggatatgcttcaccaccaaccactatgtcaaccaactttggatttgtgaaacctcatgtcgtacctgctacaaatgcacatcagtcaacatttccaaccagtcttgcggtccacaatcttgagtaccctcaatatcctgctcataatttcaacggatcatttataatttccccatctgtatatgttactcaaaatggaggtctacatagtaactttgctaccaacaatggaagcagtttgtctcagggatttaactcaatgcaacctggacatgaacagtttgtaatgaaagttccaaacaatatggttgctttgataattggcaagtggtttgagactatcaagagtatgcaaaccaagtcaggatctcgtattcggattgtaccattgcaccttcctcctggtgataagtcaactgagagatcagtatatataaatggagggaaagagcaaattgaggcagccaaagaattgattaacgaagtaatcagtggaaagcgtttattaaatgcatctggaaccaatagctatatgcaacagcatcctattccaatgataaagttactaaagctggatataatagtaactctcagtgtgtttactttcctggtgatatctgtcaaatatgctcacaatttggtcactttgctaagacttgtcctcaaagatctgcccctaggcaagttattgcttctggatcttatatgcagtgtcatttttgttccaagacaggtcataatgcagctgaatgccttggttcaacccttgagctcaccagtgtttgatactttctgctcaaaatcctggcttgctgtggaatttgggtctgtcttaaaactccaaggactgatgtactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

351

Amino Acids

38.6

Weight (kDa)

9.24

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 161 - 227 1.4e-13 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 400
AciI CCGC 1 cut(s) 305
AclWI GGATC 3 cut(s) 361, 571, 903
AcsI RAATTY 2 cut(s) 22, 1016
AfaI GTAC 4 cut(s) 261, 323, 582, 1052
AgsI TTSAA 2 cut(s) 349, 959
AjnI CCWGG 4 cut(s) 463, 598, 804, 1001
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AleI CACNNNNGTG 1 cut(s) 159
AluBI AGCT 5 cut(s) 98, 726, 769, 943, 969
AluI AGCT 5 cut(s) 98, 726, 769, 943, 969
Alw21I GWGCWC 1 cut(s) 971
Alw26I GTCTC 3 cut(s) 180, 444, 527
AlwI GGATC 3 cut(s) 361, 571, 903
ApeKI GCWGC 2 cut(s) 659, 940
ApoI RAATTY 2 cut(s) 22, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 382, 414
AspA2I CCTAGG 1 cut(s) 874
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 5 cut(s) 30, 201, 614, 820, 963
AsuNHI GCTAGC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 307
AvrII CCTAGG 1 cut(s) 874
BanII GRGCYC 1 cut(s) 971
Bbv12I GWGCWC 1 cut(s) 971
BbvI GCAGC 2 cut(s) 671, 952
BccI CCATC 1 cut(s) 379
BciT130I CCWGG 4 cut(s) 465, 600, 806, 1003
BcoDI GTCTC 3 cut(s) 180, 444, 527
BfaI CTAG 3 cut(s) 90, 126, 875
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 271
BglII AGATCT 1 cut(s) 865
BisI GCNGC 2 cut(s) 660, 941
BlnI CCTAGG 1 cut(s) 874
BlsI GCNGC 2 cut(s) 661, 942
Bme1390I CCNGG 4 cut(s) 465, 600, 806, 1003
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 718
BmrFI CCNGG 4 cut(s) 465, 600, 806, 1003
BmsI GCATC 2 cut(s) 719, 748
BmtI GCTAGC 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 338, 985
BsaJI CCNNGG 3 cut(s) 874, 951, 1039
Bse1I ACTGG 3 cut(s) 58, 297, 974
Bse3DI GCAATG 1 cut(s) 584
BseBI CCWGG 4 cut(s) 465, 600, 806, 1003
BseDI CCNNGG 3 cut(s) 874, 951, 1039
BseGI GGATG 2 cut(s) 7, 739
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 3 cut(s) 455, 606, 802
BseNI ACTGG 3 cut(s) 58, 297, 974
BseXI GCAGC 2 cut(s) 671, 952
BsiHKAI GWGCWC 1 cut(s) 971
BsmAI GTCTC 3 cut(s) 180, 444, 527
BsmI GAATGC 1 cut(s) 952
Bsp1286I GDGCHC 1 cut(s) 971
Bsp143I GATC 5 cut(s) 353, 563, 620, 865, 895
BspACI CCGC 1 cut(s) 305
BspCNI CTCAG 3 cut(s) 454, 607, 801
BspLI GGNNCC 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 3 cut(s) 361, 571, 903
BsrDI GCAATG 1 cut(s) 584
BsrI ACTGG 3 cut(s) 58, 297, 974
BssECI CCNNGG 3 cut(s) 874, 951, 1039
BssMI GATC 5 cut(s) 353, 563, 620, 865, 895
BssT1I CCWWGG 3 cut(s) 874, 951, 1039
Bst2UI CCWGG 4 cut(s) 465, 600, 806, 1003
Bst4CI ACNGT 2 cut(s) 161, 477
BstC8I GCNNGC 2 cut(s) 127, 1008
BstDEI CTNAG 4 cut(s) 441, 615, 788, 848
BstF5I GGATG 2 cut(s) 7, 739
BstKTI GATC 5 cut(s) 356, 566, 623, 868, 898
BstMAI GTCTC 3 cut(s) 180, 444, 527
BstMBI GATC 5 cut(s) 353, 563, 620, 865, 895
BstMWI GCNNNNNNNGC 2 cut(s) 95, 272
BstNI CCWGG 4 cut(s) 465, 600, 806, 1003
BstSCI CCNGG 4 cut(s) 463, 598, 804, 1001
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 671, 952
BstX2I RGATCY 3 cut(s) 563, 865, 895
BstYI RGATCY 3 cut(s) 563, 865, 895
BtsCI GGATG 2 cut(s) 7, 739
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 5 cut(s) 166, 694, 796, 913, 981
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 127, 1008
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 4 cut(s) 260, 322, 581, 1051
CviAII CATG 3 cut(s) 179, 254, 470
CviJI RGCY 8 cut(s) 78, 98, 662, 726, 769, 943, 969, 1006
CviKI_1 RGCY 8 cut(s) 78, 98, 662, 726, 769, 943, 969, 1006
CviQI GTAC 4 cut(s) 260, 322, 581, 1051
DdeI CTNAG 4 cut(s) 441, 615, 788, 848
DpnI GATC 5 cut(s) 355, 565, 622, 867, 897
DpnII GATC 5 cut(s) 353, 563, 620, 865, 895
Ecl136II GAGCTC 1 cut(s) 969
Eco130I CCWWGG 3 cut(s) 874, 951, 1039
Eco24I GRGCYC 1 cut(s) 971
Eco32I GATATC 1 cut(s) 813
Eco47I GGWCC 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 969
EcoICRI GAGCTC 1 cut(s) 969
EcoRII CCWGG 4 cut(s) 463, 598, 804, 1001
EcoRV GATATC 1 cut(s) 813
EcoT14I CCWWGG 3 cut(s) 874, 951, 1039
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 971
ErhI CCWWGG 3 cut(s) 874, 951, 1039
FaeI CATG 3 cut(s) 182, 257, 473
FatI CATG 3 cut(s) 178, 253, 469
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 660, 941
FokI GGATG 1 cut(s) 726
FriOI GRGCYC 1 cut(s) 971
Fsp4HI GCNGC 2 cut(s) 660, 941
FspBI CTAG 3 cut(s) 90, 126, 875
GluI GCNGC 2 cut(s) 660, 941
Hin1II CATG 3 cut(s) 182, 257, 473
HincII GTYRAC 3 cut(s) 228, 285, 612
HindII GTYRAC 3 cut(s) 228, 285, 612
HphI GGTGA 5 cut(s) 30, 201, 614, 820, 963
Hpy166II GTNNAC 7 cut(s) 31, 228, 285, 310, 401, 612, 798
Hpy188I TCNGA 1 cut(s) 576
Hpy188III TCNNGA 5 cut(s) 317, 541, 561, 714, 893
Hpy8I GTNNAC 7 cut(s) 31, 228, 285, 310, 401, 612, 798
HpyAV CCTTC 1 cut(s) 602
HpyCH4III ACNGT 2 cut(s) 161, 477
HpyCH4V TGCA 9 cut(s) 164, 275, 460, 550, 589, 710, 733, 906, 940
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 272
HpyF3I CTNAG 4 cut(s) 441, 615, 788, 848
Hsp92II CATG 3 cut(s) 182, 257, 473
Kzo9I GATC 5 cut(s) 353, 563, 620, 865, 895
Lsp1109I GCAGC 2 cut(s) 671, 952
LweI GCATC 2 cut(s) 719, 748
MaeI CTAG 3 cut(s) 90, 126, 875
MaeIII GTNAC 5 cut(s) 382, 407, 759, 781, 838
MalI GATC 5 cut(s) 355, 565, 622, 867, 897
MboI GATC 5 cut(s) 353, 563, 620, 865, 895
MflI RGATCY 3 cut(s) 563, 865, 895
MhlI GDGCHC 1 cut(s) 971
MluCI AATT 9 cut(s) 22, 109, 343, 363, 516, 651, 668, 832, 1016
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 9 cut(s) 21, 46, 261, 336, 389, 606, 632, 649, 869
Mph1103I ATGCAT 1 cut(s) 712
MseI TTAA 6 cut(s) 81, 108, 450, 675, 704, 1031
MslI CAYNNNNRTG 2 cut(s) 72, 159
MspA1I CMGCKG 1 cut(s) 943
MspR9I CCNGG 4 cut(s) 465, 600, 806, 1003
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 4 cut(s) 465, 600, 806, 1003
MwoI GCNNNNNNNGC 2 cut(s) 95, 272
NdeII GATC 5 cut(s) 353, 563, 620, 865, 895
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 182, 257, 473
NlaIV GGNNCC 1 cut(s) 718
NmuCI GTSAC 1 cut(s) 838
NsiI ATGCAT 1 cut(s) 712
OliI CACNNNNGTG 1 cut(s) 159
PctI GAATGC 1 cut(s) 952
PkrI GCNGC 2 cut(s) 661, 942
PsiI TTATAA 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 971
Psp6I CCWGG 4 cut(s) 463, 598, 804, 1001
PspGI CCWGG 4 cut(s) 463, 598, 804, 1001
PspN4I GGNNCC 1 cut(s) 718
PspPI GGNCC 1 cut(s) 307
PsrI GAACNNNNNNTAC 2 cut(s) 474, 506
PsuI RGATCY 3 cut(s) 563, 865, 895
PvuII CAGCTG 1 cut(s) 943
RsaI GTAC 4 cut(s) 261, 323, 582, 1052
RsaNI GTAC 4 cut(s) 260, 322, 581, 1051
RseI CAYNNNNRTG 2 cut(s) 72, 159
SacI GAGCTC 1 cut(s) 971
SaqAI TTAA 6 cut(s) 81, 108, 450, 675, 704, 1031
SatI GCNGC 2 cut(s) 660, 941
Sau3AI GATC 5 cut(s) 353, 563, 620, 865, 895
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 4 cut(s) 465, 600, 806, 1003
SduI GDGCHC 1 cut(s) 971
SfaNI GCATC 2 cut(s) 719, 748
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 72, 159
SmlI CTYRAG 2 cut(s) 317, 964
SmoI CTYRAG 2 cut(s) 317, 964
Sse9I AATT 9 cut(s) 22, 109, 343, 363, 516, 651, 668, 832, 1016
SsiI CCGC 1 cut(s) 305
SspMI CTAG 3 cut(s) 90, 126, 875
SstI GAGCTC 1 cut(s) 971
StyD4I CCNGG 4 cut(s) 463, 598, 804, 1001
StyI CCWWGG 3 cut(s) 874, 951, 1039
TaaI ACNGT 2 cut(s) 161, 477
TaqI TCGA 1 cut(s) 18
TasI AATT 9 cut(s) 22, 109, 343, 363, 516, 651, 668, 832, 1016
TatI WGTACW 1 cut(s) 1050
Tru1I TTAA 6 cut(s) 81, 108, 450, 675, 704, 1031
Tru9I TTAA 6 cut(s) 81, 108, 450, 675, 704, 1031
TscAI CASTG 5 cut(s) 166, 694, 796, 913, 981
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 2 cut(s) 659, 940
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 2 cut(s) 486, 500
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 5 cut(s) 166, 694, 796, 913, 981
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 2 cut(s) 22, 1016
XmaJI CCTAGG 1 cut(s) 874
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 3 cut(s) 90, 126, 875
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.