Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004608.1

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Reverse (-)

10312 .. 15838

Gene Structure 5527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2508 bp

ctgagacagtcaccgccaccgcccaaaccacagtgtttgccgccgaagctgagaacttcgccgccgccttcgattcatttttggtcgtcgaggatttgcgtcaagaatttgccgaaacacgtcgacgataagaagctccgggagcttttctccgagaaaggagaagtcacggacgccaagctcatgcgaaccaaggaaggcaagagccgccagttcgctttcatagggttccgctccgagcttcaagctcaggaggccatcaaatacttcaataaaacttttattgatacttaccggatcagttgcgagcttgctcggaaagttggggatcccgagattccgaggccgtggagtcgccatactaaggagaaagagaaggagaaggagaagagagagagtgaaggtgctgccgcggcggaggcgaaaagccggagcggagtgggagggaagaggagtgaggatgaggatgagattgatgatcctaagcttaaggagtttttgcaggtgatgcagcctagggctaagtcgaaattgtggtcgaatgacactgtgattgctaatgttgaggggaaaattgggaaaggagagaagaagagagagcagaggaagaagaaggggaatgaagagagtttggtgacgatggatgtggaggtagaggaggaagtggagaaggatgattcacacaatgtggccaaggataatgtggtttcggatatggattacttcaagagtagagtgaagaaggattggtcggattctgaaagtagtgacagtgatgatgaggaggaggaggaggaggaaggtgaagaattagatgctaaggaagaagctgaggttaatgaagaagaggcaggagaggaaaaagtacttgcacagagtaatccttcgtccagtttgaaagatgagaaagatgaaatgcttgatactagtcggctttttattcgaaatttgccatttacagcaacagaggacgagttggaagagcatttttgcaaattcggggatgcacaagttcatcttgttgttgataaagaaatgaatcggtccaagggaattgcttatgttctttactcgcatccagaatcggcacaaagggcattagaagaattagacggttcaatttttcaaggaagattgttgcatgttatgccagcaaaacaaaaaaacccgtctccaggggctgatgattcggcaaaccaagcttcaaagtctcttaagcaacaaagggaggagaagaggaaagcatccgaagctagtggagatacacgagcatggaatagtttgtttatacgcactgagacagctgttgatcacttagctcggaagtttggggtgagcaagagtgattttcttgacccgcaagctgatgatgtcgctgtacgtgttgctcaagcagagacacaagtgattgcacagacaaaaaaggctcttacaaatgctggtgtaaatgtagaatctttagagaattttgctgctgggaaaggtggtgatatgaaaagaagcaaccatgttatacttgtgaaaaacttgccatatggttcttctgatagtgaactaggaaacatgtttggaaaatttgggagttttgaaaaaatcattatgcctccgacaaagacattggcgttggttgtcttttttgaaccttctggagctcgagcagcttttaaaggtttggcgtacaagaaatacaaggatgttcctctatatttggaatgggctcctggcaatgttcttagtccaagttcaacagctgagagcaatgaaaagaagcattctgctgttgctgaacataagccactggtggaaggaactccagatgatcttgatcttgatcctgatagagttgagtcacgaactctatatgtcaagaatttgaacttcaagacatctgacgagagcttgaagaagcattttgaacaagtgaaggagggaagactattgagcgccaaggtgaagaaacacttgaaaaaagggaagaatctttcaatgggatttggttttgtagaatttgactctgtggagacagccacagaggtttgcaagagtttacagggaacaattttggatggccaccaacttattttgcaacattgtcatgccaagcaagatgacgtgccaaaaaaagttgtgaaggacaaaagttcaacaaaaatacttgtaaaaaatgtagcctttgaggctacaaagaaagagcttcgacagttgtttagtacatatggcgagattaaaagcttgcggttaccaaacagattgggacagcatagaggctttgcatttgtggagtttgccacaaagcaagaggcagaaaatgccatccaagcgcttgcaagcacacatctgtacggtcgccatctggttctggagagagcaaaggaaggtgagaccttggaagatttaagagctcgaatagctgctcagttcacagatgaccaaaatactatttccaggaaaaggaaggctgtcgcaaccttggatgaagataacatgaaatttgatatgactgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

835

Amino Acids

93.99

Weight (kDa)

6.11

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	32 - 100	5.1e-15	RNA recognition motif
RRM_1	PF00076	312 - 380	2e-16	RNA recognition motif
RRM_1	PF00076	505 - 565	1.8e-07	RNA recognition motif
RRM_1	PF00076	620 - 693	6.6e-13	RNA recognition motif
RRM_1	PF00076	718 - 785	1.5e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	493
AccBSI	CCGCTC	2 cut(s)	234, 435
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	413
AclWI	GGATC	5 cut(s)	305, 323, 336, 473, 1826
AcoI	YGGCCR	2 cut(s)	690, 2068
AcsI	RAATTY	8 cut(s)	106, 946, 995, 1465, 1574, 1870, 2006, 2489
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	5 cut(s)	867, 1380, 1679, 2212, 2342
AfeI	AGCGCT	1 cut(s)	2322
AfiI	CCNNNNNNNGG	3 cut(s)	364, 1175, 2451
AflII	CTTAAG	2 cut(s)	488, 1214
AflIII	ACRYGT	3 cut(s)	118, 1381, 1563
AhlI	ACTAGT	1 cut(s)	926
AjiI	CACGTC	2 cut(s)	121, 2113
AjnI	CCWGG	3 cut(s)	1174, 1720, 2444
Alw21I	GWGCWC	2 cut(s)	1654, 2404
Alw26I	GTCTC	6 cut(s)	1176, 1215, 1292, 1391, 2015, 2375
AlwI	GGATC	5 cut(s)	305, 323, 336, 473, 1826
AlwNI	CAGNNNCTG	1 cut(s)	1181
Ama87I	CYCGRG	2 cut(s)	332, 1653
Aor51HI	AGCGCT	1 cut(s)	2322
AoxI	GGCC	4 cut(s)	255, 344, 690, 2068
ApeKI	GCWGC	5 cut(s)	407, 511, 1472, 1658, 2411
ApoI	RAATTY	8 cut(s)	106, 946, 995, 1465, 1574, 1870, 2006, 2489
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspA2I	CCTAGG	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	1946, 2323
AspS9I	GGNCC	1 cut(s)	1044
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	8 cut(s)	3, 517, 646, 815, 1345, 1499, 1963, 2390
AsuII	TTCGAA	1 cut(s)	943
AvaI	CYCGRG	2 cut(s)	332, 1653
AvaII	GGWCC	1 cut(s)	1044
AvrII	CCTAGG	1 cut(s)	515
BalI	TGGCCA	2 cut(s)	692, 2070
BamHI	GGATCC	1 cut(s)	328
BanII	GRGCYC	3 cut(s)	1654, 1720, 2404
BauI	CACGAG	1 cut(s)	1266
BbsI	GAAGAC	1 cut(s)	1939
Bbv12I	GWGCWC	2 cut(s)	1654, 2404
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	5 cut(s)	394, 523, 1459, 1670, 2398
BccI	CCATC	5 cut(s)	266, 634, 2060, 2321, 2358
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	3 cut(s)	1176, 1722, 2446
BclI	TGATCA	1 cut(s)	1309
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	6 cut(s)	1176, 1215, 1292, 1391, 2015, 2375
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	4 cut(s)	516, 927, 1254, 1556
BfoI	RGCGCY	2 cut(s)	1947, 2324
BfrI	CTTAAG	2 cut(s)	488, 1214
BfuAI	ACCTGC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	2177
BlnI	CCTAGG	1 cut(s)	515
BmcAI	AGTACT	1 cut(s)	867
Bme1390I	CCNGG	4 cut(s)	140, 1176, 1722, 2446
Bme18I	GGWCC	1 cut(s)	1044
BmeT110I	CYCGRG	2 cut(s)	332, 1653
BmgBI	CACGTC	2 cut(s)	121, 2113
BmgT120I	GGNCC	1 cut(s)	1044
BmiI	GGNNCC	3 cut(s)	230, 330, 1719
BmrFI	CCNGG	4 cut(s)	140, 1176, 1722, 2446
BmsI	GCATC	5 cut(s)	498, 805, 994, 1084, 1253
BpiI	GAAGAC	1 cut(s)	1939
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	4 cut(s)	1158, 1668, 1797, 2381
Bpu10I	CCTNAGC	4 cut(s)	249, 483, 819, 831
Bpu14I	TTCGAA	1 cut(s)	943
BpuEI	CTTGAG	1 cut(s)	1374
BpuMI	CCSGG	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	1382
BsaBI	GATNNNNATC	2 cut(s)	1824, 1830
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	2375
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 1175, 2451
Bse1I	ACTGG	3 cut(s)	211, 891, 1803
Bse3DI	GCAATG	2 cut(s)	1732, 1765
Bse8I	GATNNNNATC	2 cut(s)	1824, 1830
BseBI	CCWGG	3 cut(s)	1176, 1722, 2446
BseJI	GATNNNNATC	2 cut(s)	1824, 1830
BseLI	CCNNNNNNNGG	3 cut(s)	364, 1175, 2451
BseMI	GCAATG	2 cut(s)	1732, 1765
BseMII	CTCAG	6 cut(s)	41, 263, 822, 1287, 1743, 2429
BseNI	ACTGG	3 cut(s)	211, 891, 1803
BseRI	GAGGAG	8 cut(s)	466, 671, 797, 800, 803, 806, 809, 1244
BseXI	GCAGC	5 cut(s)	394, 523, 1459, 1670, 2398
BseYI	CCCAGC	1 cut(s)	1475
Bsh1236I	CGCG	1 cut(s)	413
Bsh1285I	CGRYCG	1 cut(s)	2347
BshFI	GGCC	4 cut(s)	257, 346, 692, 2070
BsiEI	CGRYCG	1 cut(s)	2347
BsiHKAI	GWGCWC	2 cut(s)	1654, 2404
BsiHKCI	CYCGRG	2 cut(s)	332, 1653
BsiSI	CCGG	3 cut(s)	139, 295, 430
BslFI	GGGAC	1 cut(s)	2268
BslI	CCNNNNNNNGG	3 cut(s)	364, 1175, 2451
BsmAI	GTCTC	6 cut(s)	1176, 1215, 1292, 1391, 2015, 2375
BsmBI	CGTCTC	1 cut(s)	1176
BsmFI	GGGAC	1 cut(s)	2268
BsmI	GAATGC	1 cut(s)	1771
BsnI	GGCC	4 cut(s)	257, 346, 692, 2070
Bso31I	GGTCTC	1 cut(s)	2375
BsoBI	CYCGRG	2 cut(s)	332, 1653
Bsp119I	TTCGAA	1 cut(s)	943
Bsp1286I	GDGCHC	3 cut(s)	1654, 1720, 2404
Bsp143I	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
BspANI	GGCC	4 cut(s)	257, 346, 692, 2070
BspCNI	CTCAG	6 cut(s)	42, 262, 823, 1288, 1744, 2428
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	3 cut(s)	230, 330, 1719
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	5 cut(s)	305, 323, 336, 473, 1826
BspQI	GCTCTTC	1 cut(s)	975
BspT104I	TTCGAA	1 cut(s)	943
BspTI	CTTAAG	2 cut(s)	488, 1214
BspTNI	GGTCTC	1 cut(s)	2375
BsrBI	CCGCTC	2 cut(s)	234, 435
BsrDI	GCAATG	2 cut(s)	1732, 1765
BsrI	ACTGG	3 cut(s)	211, 891, 1803
BssMI	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	1266
BssT1I	CCWWGG	7 cut(s)	192, 515, 693, 1047, 1947, 2385, 2469
Bst2BI	CACGAG	1 cut(s)	1266
Bst2UI	CCWGG	3 cut(s)	1176, 1722, 2446
Bst4CI	ACNGT	7 cut(s)	9, 33, 550, 773, 1115, 2202, 2345
Bst6I	CTCTTC	7 cut(s)	383, 443, 587, 618, 840, 975, 1229
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	2 cut(s)	488, 1214
BstAPI	GCANNNNNTGC	3 cut(s)	508, 1147, 2309
BstBAI	YACGTR	1 cut(s)	1382
BstBI	TTCGAA	1 cut(s)	943
BstC8I	GCNNGC	7 cut(s)	308, 312, 1152, 1362, 2234, 2325, 2329
BstDSI	CCRYGG	2 cut(s)	347, 411
BstEII	GGTNACC	1 cut(s)	2238
BstFNI	CGCG	1 cut(s)	413
BstH2I	RGCGCY	2 cut(s)	1947, 2324
BstHHI	GCGC	2 cut(s)	1946, 2323
BstKTI	GATC	7 cut(s)	300, 331, 481, 1312, 1822, 1828, 1834
BstMAI	GTCTC	6 cut(s)	1176, 1215, 1292, 1391, 2015, 2375
BstMBI	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
BstMCI	CGRYCG	1 cut(s)	2347
BstNI	CCWGG	3 cut(s)	1176, 1722, 2446
BstNSI	RCATGY	2 cut(s)	1145, 1567
BstPI	GGTNACC	1 cut(s)	2238
BstSCI	CCNGG	4 cut(s)	138, 1174, 1720, 2444
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	5 cut(s)	394, 523, 1459, 1670, 2398
BstV2I	GAAGAC	1 cut(s)	1939
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	4 cut(s)	257, 346, 692, 2070
BtgI	CCRYGG	2 cut(s)	347, 411
BtrI	CACGTC	2 cut(s)	121, 2113
BtsIMutI	CAGTG	5 cut(s)	38, 546, 778, 1293, 1796
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	7 cut(s)	308, 312, 1152, 1362, 2234, 2325, 2329
CaiI	CAGNNNCTG	1 cut(s)	1181
CfoI	GCGC	2 cut(s)	1946, 2323
Cfr13I	GGNCC	1 cut(s)	1044
Cfr42I	CCGCGG	1 cut(s)	414
CseI	GACGC	2 cut(s)	88, 182
Csp6I	GTAC	5 cut(s)	866, 1379, 1678, 2211, 2341
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	7 cut(s)	184, 1142, 1272, 1508, 1564, 2096, 2485
CviQI	GTAC	5 cut(s)	866, 1379, 1678, 2211, 2341
DpnI	GATC	7 cut(s)	299, 330, 480, 1311, 1821, 1827, 1833
DpnII	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
DraI	TTTAAA	1 cut(s)	1666
DraIII	CACNNNGTG	1 cut(s)	688
EaeI	YGGCCR	2 cut(s)	690, 2068
Eam1104I	CTCTTC	7 cut(s)	383, 443, 587, 618, 840, 975, 1229
EarI	CTCTTC	7 cut(s)	383, 443, 587, 618, 840, 975, 1229
EciI	GGCGGA	1 cut(s)	431
Ecl136II	GAGCTC	2 cut(s)	1652, 2402
Eco130I	CCWWGG	7 cut(s)	192, 515, 693, 1047, 1947, 2385, 2469
Eco24I	GRGCYC	3 cut(s)	1654, 1720, 2404
Eco31I	GGTCTC	1 cut(s)	2375
Eco47I	GGWCC	1 cut(s)	1044
Eco47III	AGCGCT	1 cut(s)	2322
Eco53kI	GAGCTC	2 cut(s)	1652, 2402
Eco88I	CYCGRG	2 cut(s)	332, 1653
Eco91I	GGTNACC	1 cut(s)	2238
EcoICRI	GAGCTC	2 cut(s)	1652, 2402
EcoO65I	GGTNACC	1 cut(s)	2238
EcoRII	CCWGG	3 cut(s)	1174, 1720, 2444
EcoT14I	CCWWGG	7 cut(s)	192, 515, 693, 1047, 1947, 2385, 2469
EcoT38I	GRGCYC	3 cut(s)	1654, 1720, 2404
ErhI	CCWWGG	7 cut(s)	192, 515, 693, 1047, 1947, 2385, 2469
Esp3I	CGTCTC	1 cut(s)	1176
FaeI	CATG	7 cut(s)	187, 1145, 1275, 1511, 1567, 2099, 2488
FalI	AAGNNNNNCTT	4 cut(s)	1002, 1034, 1946, 1978
FaqI	GGGAC	1 cut(s)	2268
FatI	CATG	7 cut(s)	183, 1141, 1271, 1507, 1563, 2095, 2484
FauI	CCCGC	1 cut(s)	1365
FauNDI	CATATG	2 cut(s)	1534, 2215
FbaI	TGATCA	1 cut(s)	1309
FblI	GTMKAC	1 cut(s)	123
FriOI	GRGCYC	3 cut(s)	1654, 1720, 2404
FspBI	CTAG	4 cut(s)	516, 927, 1254, 1556
GlaI	GCGC	2 cut(s)	1945, 2322
GsaI	CCCAGC	1 cut(s)	1479
GsuI	CTGGAG	4 cut(s)	1158, 1668, 1797, 2381
HaeII	RGCGCY	2 cut(s)	1947, 2324
HaeIII	GGCC	4 cut(s)	257, 346, 692, 2070
HapII	CCGG	3 cut(s)	139, 295, 430
HgaI	GACGC	2 cut(s)	88, 182
HhaI	GCGC	2 cut(s)	1946, 2323
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	7 cut(s)	187, 1145, 1275, 1511, 1567, 2099, 2488
Hin6I	GCGC	2 cut(s)	1944, 2321
HinP1I	GCGC	2 cut(s)	1944, 2321
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	3 cut(s)	485, 1200, 2230
HpaII	CCGG	3 cut(s)	139, 295, 430
HphI	GGTGA	8 cut(s)	3, 517, 646, 815, 1345, 1499, 1963, 2390
Hpy166II	GTNNAC	4 cut(s)	124, 1553, 2048, 2421
Hpy8I	GTNNAC	4 cut(s)	124, 1553, 2048, 2421
Hpy99I	CGWCG	3 cut(s)	91, 125, 128
HpyCH4III	ACNGT	7 cut(s)	9, 33, 550, 773, 1115, 2202, 2345
HpyCH4IV	ACGT	3 cut(s)	120, 1381, 2112
HpySE526I	ACGT	3 cut(s)	120, 1381, 2112
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	7 cut(s)	187, 1145, 1275, 1511, 1567, 2099, 2488
HspAI	GCGC	2 cut(s)	1944, 2321
Ksp22I	TGATCA	1 cut(s)	1309
KspI	CCGCGG	1 cut(s)	414
Kzo9I	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	6 cut(s)	141, 142, 239, 432, 1649, 1723
Lsp1109I	GCAGC	5 cut(s)	394, 523, 1459, 1670, 2398
LweI	GCATC	5 cut(s)	498, 805, 994, 1084, 1253
MaeI	CTAG	4 cut(s)	516, 927, 1254, 1556
MaeII	ACGT	3 cut(s)	120, 1381, 2112
MaeIII	GTNAC	6 cut(s)	9, 166, 634, 767, 1848, 2238
MalI	GATC	7 cut(s)	299, 330, 480, 1311, 1821, 1827, 1833
MbiI	CCGCTC	2 cut(s)	234, 435
MboI	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	3 cut(s)	1654, 1720, 2404
MlsI	TGGCCA	2 cut(s)	692, 2070
MluNI	TGGCCA	2 cut(s)	692, 2070
MlyI	GAGTC	3 cut(s)	361, 1856, 2006
MmeI	TCCRAC	3 cut(s)	732, 957, 1631
Mox20I	TGGCCA	2 cut(s)	692, 2070
MscI	TGGCCA	2 cut(s)	692, 2070
MseI	TTAA	6 cut(s)	489, 837, 1215, 1665, 2226, 2396
MslI	CAYNNNNRTG	2 cut(s)	1270, 2094
Msp20I	TGGCCA	2 cut(s)	692, 2070
MspA1I	CMGCKG	3 cut(s)	413, 1304, 1751
MspCI	CTTAAG	2 cut(s)	488, 1214
MspI	CCGG	3 cut(s)	139, 295, 430
MspR9I	CCNGG	4 cut(s)	140, 1176, 1722, 2446
Mva1269I	GAATGC	1 cut(s)	1771
MvaI	CCWGG	3 cut(s)	1176, 1722, 2446
MvnI	CGCG	1 cut(s)	413
NciI	CCSGG	1 cut(s)	140
NdeI	CATATG	2 cut(s)	1534, 2215
NdeII	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
NlaIII	CATG	7 cut(s)	187, 1145, 1275, 1511, 1567, 2099, 2488
NlaIV	GGNNCC	3 cut(s)	230, 330, 1719
NmuCI	GTSAC	5 cut(s)	9, 166, 634, 767, 1848
NspI	RCATGY	2 cut(s)	1145, 1567
NspV	TTCGAA	1 cut(s)	943
PaeR7I	CTCGAG	1 cut(s)	1653
PaqCI	CACCTGC	1 cut(s)	493
PciI	ACATGT	1 cut(s)	1563
PciSI	GCTCTTC	1 cut(s)	975
PctI	GAATGC	1 cut(s)	1771
PfeI	GAWTC	9 cut(s)	73, 337, 677, 755, 1039, 1082, 1187, 1454, 1978
PfoI	TCCNGGA	2 cut(s)	138, 2444
PleI	GAGTC	3 cut(s)	360, 1855, 2006
PpsI	GAGTC	3 cut(s)	360, 1855, 2006
Ppu21I	YACGTR	1 cut(s)	1382
PscI	ACATGT	1 cut(s)	1563
Psp124BI	GAGCTC	2 cut(s)	1654, 2404
Psp6I	CCWGG	3 cut(s)	1174, 1720, 2444
PspEI	GGTNACC	1 cut(s)	2238
PspFI	CCCAGC	1 cut(s)	1475
PspGI	CCWGG	3 cut(s)	1174, 1720, 2444
PspN4I	GGNNCC	3 cut(s)	230, 330, 1719
PspPI	GGNCC	1 cut(s)	1044
PspXI	VCTCGAGB	1 cut(s)	1653
PstNI	CAGNNNCTG	1 cut(s)	1181
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	2 cut(s)	1304, 1751
RsaI	GTAC	5 cut(s)	867, 1380, 1679, 2212, 2342
RsaNI	GTAC	5 cut(s)	866, 1379, 1678, 2211, 2341
RseI	CAYNNNNRTG	2 cut(s)	1270, 2094
SacI	GAGCTC	2 cut(s)	1654, 2404
SacII	CCGCGG	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	6 cut(s)	489, 837, 1215, 1665, 2226, 2396
Sau3AI	GATC	7 cut(s)	297, 328, 478, 1309, 1819, 1825, 1831
Sau96I	GGNCC	1 cut(s)	1044
ScaI	AGTACT	1 cut(s)	867
SchI	GAGTC	3 cut(s)	361, 1856, 2006
ScrFI	CCNGG	4 cut(s)	140, 1176, 1722, 2446
SduI	GDGCHC	3 cut(s)	1654, 1720, 2404
SfaNI	GCATC	5 cut(s)	498, 805, 994, 1084, 1253
Sfr274I	CTCGAG	1 cut(s)	1653
Sfr303I	CCGCGG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	943
SgrBI	CCGCGG	1 cut(s)	414
SgrDI	CGTCGACG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	1044
SlaI	CTCGAG	1 cut(s)	1653
SmiMI	CAYNNNNRTG	2 cut(s)	1270, 2094
SmlI	CTYRAG	4 cut(s)	488, 1214, 1389, 1653
SmoI	CTYRAG	4 cut(s)	488, 1214, 1389, 1653
SpeI	ACTAGT	1 cut(s)	926
SspMI	CTAG	4 cut(s)	516, 927, 1254, 1556
SstI	GAGCTC	2 cut(s)	1654, 2404
StyD4I	CCNGG	4 cut(s)	138, 1174, 1720, 2444
StyI	CCWWGG	7 cut(s)	192, 515, 693, 1047, 1947, 2385, 2469
TaaI	ACNGT	7 cut(s)	9, 33, 550, 773, 1115, 2202, 2345
TaiI	ACGT	3 cut(s)	123, 1384, 2115
TaqI	TCGA	9 cut(s)	71, 89, 123, 527, 539, 943, 1654, 2197, 2404
TaqII	GACCGA	1 cut(s)	1032
TatI	WGTACW	2 cut(s)	865, 2210
TauI	GCSGC	6 cut(s)	43, 64, 67, 210, 413, 416
TfiI	GAWTC	9 cut(s)	73, 337, 677, 755, 1039, 1082, 1187, 1454, 1978
Tru1I	TTAA	6 cut(s)	489, 837, 1215, 1665, 2226, 2396
Tru9I	TTAA	6 cut(s)	489, 837, 1215, 1665, 2226, 2396
TscAI	CASTG	5 cut(s)	38, 553, 778, 1300, 1803
TseFI	GTSAC	5 cut(s)	9, 166, 634, 767, 1848
TseI	GCWGC	5 cut(s)	407, 511, 1472, 1658, 2411
Tsp45I	GTSAC	5 cut(s)	9, 166, 634, 767, 1848
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	5 cut(s)	38, 553, 778, 1300, 1803
Vha464I	CTTAAG	2 cut(s)	488, 1214
VpaK11BI	GGWCC	1 cut(s)	1044
XapI	RAATTY	8 cut(s)	106, 946, 995, 1465, 1574, 1870, 2006, 2489
XceI	RCATGY	2 cut(s)	1145, 1567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	1653
XmaJI	CCTAGG	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	4 cut(s)	516, 927, 1254, 1556
ZrmI	AGTACT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.